genome.fa.s3292.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003292.1 Hibiscus syriacus cultivar Beakdansim tig00006922_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  81708

Tables:   1   

This is table  1  of  1  ( 54 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5805--5862	23	2.5	23	83	5	64	36	29	17	17	1.92
5826--5891	23	2.9	23	84	4	71	34	27	18	19	1.95
5975--6108	44	3.0	44	82	1	133	35	20	14	29	1.92
6448--6574	61	2.1	61	96	0	236	30	20	15	33	1.94
15386--15670	111	2.6	108	75	8	269	50	15	2	30	1.58
18788--18829	21	2.0	21	81	9	50	19	42	0	38	1.51
23398--23435	17	2.2	17	100	0	76	60	10	18	10	1.57
28384--28416	14	2.2	16	89	10	52	24	3	18	54	1.57
29068--29402	30	11.2	30	84	5	249	34	3	36	25	1.75
29085--29136	15	3.4	16	70	20	56	34	3	36	25	1.74
29068--29426	60	6.0	60	81	4	384	34	3	35	25	1.75
29109--29252	45	3.2	45	72	11	141	33	4	36	25	1.77
29079--29426	120	2.9	120	86	1	484	34	4	35	25	1.75
29294--29373	15	5.3	15	73	11	83	37	3	36	22	1.72
32486--32526	22	1.9	21	85	5	55	60	9	12	17	1.57
32605--32650	15	3.1	15	100	0	92	47	26	0	26	1.52
36752--36790	16	2.4	16	100	0	78	28	25	7	38	1.83
37902--37936	12	2.8	12	91	4	52	40	34	8	17	1.80
38129--38456	74	4.4	72	77	10	272	43	5	6	44	1.52
38133--38456	38	8.8	37	76	14	255	43	4	6	44	1.52
38271--38295	12	2.1	12	100	0	50	40	8	8	44	1.63
38203--38615	37	11.9	35	75	16	250	42	4	7	45	1.52
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38465--38604	33	4.5	30	74	16	126	42	4	7	45	1.52
38618--38684	4	18.0	4	74	11	54	19	4	2	73	1.14
39923--39978	27	2.1	27	89	0	85	39	3	0	57	1.16
39963--40017	20	2.8	20	74	15	53	20	5	3	70	1.22
40017--40084	20	3.3	20	76	15	59	20	5	5	67	1.33
45014--46049	84	12.5	84	79	6	1074	29	25	21	24	1.99
45014--46119	165	6.7	165	86	3	1524	29	25	21	23	1.99
46705--47020	37	8.8	38	75	18	236	42	5	6	45	1.53
46719--47144	70	6.1	70	73	17	322	42	4	7	45	1.52
46761--47177	33	12.2	33	74	17	231	42	4	7	45	1.52
47110--47173	30	2.2	29	85	2	83	40	1	7	50	1.41
46719--47181	35	13.4	33	74	17	278	42	4	7	46	1.51
48485--48547	2	32.0	2	87	3	83	46	3	0	50	1.17
49903--49953	13	4.0	13	80	17	54	52	0	1	45	1.12
49903--49953	25	2.0	26	84	3	68	52	0	1	45	1.12
50285--50336	23	2.4	22	80	6	61	55	17	11	15	1.68
51090--51143	16	3.4	15	83	14	63	55	0	0	44	0.99
51091--51143	15	3.2	17	78	13	65	54	0	0	45	0.99
53373--53416	18	2.4	18	82	17	56	34	4	4	56	1.40
55278--55328	22	2.3	23	96	3	95	19	17	17	45	1.86
58839--58894	21	2.6	21	88	8	78	23	14	7	55	1.63
58850--58900	21	2.5	21	87	6	70	17	13	7	60	1.56
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
63183--63211	14	2.0	15	93	6	51	31	6	6	55	1.53
66416--66469	27	2.0	28	82	13	69	57	0	7	35	1.27
67999--68041	16	2.8	16	76	16	54	20	6	30	41	1.79
71295--71412	46	2.6	46	88	0	173	26	20	8	44	1.79
71518--71799	81	3.5	81	86	0	368	30	23	10	34	1.89
71749--71935	68	2.7	67	85	3	248	31	25	14	28	1.95
72197--72317	54	2.2	54	91	0	188	33	19	19	27	1.96
72650--72692	22	2.0	22	86	9	61	30	27	13	27	1.95
75195--75234	21	1.9	21	85	10	55	30	17	0	52	1.45
75632--75684	18	2.9	18	91	0	88	30	32	20	16	1.95

Tables:   1

The End!