Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003294.1 Hibiscus syriacus cultivar Beakdansim tig00006927_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  86753

Tables:   1   

This is table  1  of  1  ( 56 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1154--1198
21
2.1
22
84
12
58
51
0
4
44
1.21
3874--4023
5
28.6
5
68
22
69
54
3
4
38
1.36
3871--3949
22
3.5
23
78
16
78
58
1
1
39
1.14
3873--3976
16
6.4
16
74
11
63
56
1
2
38
1.25
3874--3988
57
2.0
57
81
9
137
53
1
4
40
1.31
9538--9585
19
2.5
20
86
3
62
50
6
14
29
1.67
11483--11515
17
1.9
17
100
0
66
21
36
24
18
1.95
13478--13532
22
2.6
21
82
8
58
21
3
20
54
1.59
16290--16361
37
2.0
36
88
2
108
25
26
18
30
1.98
19521--19597
41
1.9
40
89
2
118
41
12
10
35
1.78
19942--20015
10
7.1
10
76
8
67
13
8
17
60
1.56
19942--20005
33
1.9
33
87
0
92
14
7
17
60
1.56
23246--23271
9
2.9
9
100
0
52
42
23
23
11
1.86
25118--25166
22
2.3
22
92
3
82
26
18
12
42
1.85
29667--29714
21
2.3
21
96
0
87
27
18
12
41
1.86
37223--37270
3
15.3
3
78
8
51
41
0
0
58
0.98
37215--37260
22
2.1
22
88
8
67
47
0
0
52
1.00
37214--37285
28
2.6
27
81
14
76
47
0
0
52
1.00
42322--42392
4
17.8
4
74
21
60
76
4
18
1
1.03
42349--42391
11
3.9
11
93
0
68
79
0
20
0
0.74
42349--42392
15
2.9
15
80
12
54
79
0
20
0
0.73
42315--42394
26
3.0
27
77
10
85
73
7
16
2
1.16
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
42353--42429
11
7.3
11
78
8
61
81
0
15
2
0.79
42349--42432
7
11.7
7
74
9
62
80
0
16
2
0.81
42360--42427
12
5.2
12
75
21
50
82
0
14
2
0.79
45868--46042
74
2.4
74
85
4
219
32
17
21
28
1.96
47374--47428
22
2.5
22
90
0
92
34
10
12
41
1.78
47943--48267
165
2.0
167
87
2
476
35
14
12
37
1.84
48270--48913
76
8.5
76
95
1
1103
23
19
22
34
1.96
48270--48913
151
4.2
152
95
1
1103
23
19
22
34
1.96
48270--48913
227
2.8
227
94
1
1101
23
19
22
34
1.96
49029--49080
3
16.7
3
77
15
52
57
0
0
42
0.98
49030--49073
22
2.0
22
86
8
63
56
0
0
43
0.99
49029--49114
35
2.5
35
85
11
106
52
0
0
47
1.00
50409--50457
3
17.3
3
79
12
59
32
0
0
67
0.91
50416--50454
11
3.7
11
93
6
64
33
0
0
66
0.92
50409--50459
14
3.6
14
79
10
68
31
0
0
68
0.90
50569--50767
107
1.9
107
85
8
280
35
10
9
44
1.71
50566--50787
107
2.1
108
82
9
276
36
9
8
45
1.66
57301--57337
16
2.3
16
90
0
56
32
27
18
21
1.97
58195--58248
13
4.4
13
72
13
51
20
42
18
18
1.89
58191--58242
23
2.3
23
93
0
86
21
44
19
15
1.87
60635--60719
24
3.6
24
88
1
109
27
11
21
40
1.88
62574--62603
14
2.1
14
93
0
51
40
0
3
56
1.16
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
62722--62785
23
2.8
22
73
19
60
42
3
1
53
1.26
62732--62776
23
2.1
22
88
12
67
42
4
2
51
1.34
62774--62861
42
2.1
42
87
4
135
45
1
1
52
1.15
62781--62855
22
3.5
22
73
14
75
49
1
1
48
1.18
62839--62902
30
2.1
29
83
13
76
51
0
0
48
1.00
63308--63358
14
3.4
14
76
23
59
58
0
5
35
1.22
63627--63679
25
2.1
26
89
3
81
35
15
16
32
1.90
64454--64549
31
3.2
31
88
7
128
16
14
9
59
1.60
64558--64951
44
8.9
42
72
12
247
24
20
6
48
1.74
69871--70354
73
6.5
73
82
10
484
32
11
12
43
1.79
69871--70354
147
3.2
145
81
8
571
32
11
12
43
1.79
81909--81969
22
2.8
22
87
0
95
22
29
26
21
1.99

Tables:   1

The End!