Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01003298.1 Hibiscus syriacus cultivar Beakdansim tig00006938_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 121966
ACGTcount: A:0.32, C:0.18, G:0.17, T:0.33
Found at i:3563 original size:21 final size:21
Alignment explanation
Indices: 3534--3629 Score: 61
Period size: 21 Copynumber: 4.7 Consensus size: 21
3524 AGAAAGTTTT
3534 GGAT-AATCCTTTTGGTTGAG
1 GGATCAATCCTTTTGGTTGAG
* *** *
3554 GGATCGATCCTTTTTCCTGAC
1 GGATCAATCCTTTTGGTTGAG
* * ***
3575 AGATCAATCATTTT-GAAAAG
1 GGATCAATCCTTTTGGTTGAG
* * *
3595 GGATCGATCCCTTTGGTCGAG
1 GGATCAATCCTTTTGGTTGAG
3616 GGATCAATCCTTTT
1 GGATCAATCCTTTT
3630 TATGGGAATG
Statistics
Matches: 52, Mismatches: 22, Indels: 3
0.68 0.29 0.04
Matches are distributed among these distances:
20 15 0.29
21 37 0.71
ACGTcount: A:0.23, C:0.19, G:0.23, T:0.35
Consensus pattern (21 bp):
GGATCAATCCTTTTGGTTGAG
Found at i:12267 original size:2 final size:2
Alignment explanation
Indices: 12260--12332 Score: 146
Period size: 2 Copynumber: 36.5 Consensus size: 2
12250 TCAATTTACA
12260 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
12302 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
12333 ATTTACTAAA
Statistics
Matches: 71, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 71 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:21942 original size:12 final size:12
Alignment explanation
Indices: 21925--21969 Score: 65
Period size: 12 Copynumber: 3.8 Consensus size: 12
21915 AAGCCCTAAA
21925 AAATATATTTAT
1 AAATATATTTAT
21937 AAATATATTTAT
1 AAATATATTTAT
* *
21949 ATATATAATTA-
1 AAATATATTTAT
21960 AAATATATTT
1 AAATATATTT
21970 CCATCATATA
Statistics
Matches: 29, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
11 8 0.28
12 21 0.72
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (12 bp):
AAATATATTTAT
Found at i:22942 original size:16 final size:16
Alignment explanation
Indices: 22918--22948 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
22908 TTAATTACTT
*
22918 AATGGTTCAAATGCTG
1 AATGATTCAAATGCTG
22934 AATGATTCAAATGCT
1 AATGATTCAAATGCT
22949 CTAAATGGTT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.35, C:0.13, G:0.19, T:0.32
Consensus pattern (16 bp):
AATGATTCAAATGCTG
Found at i:30175 original size:29 final size:29
Alignment explanation
Indices: 30134--30210 Score: 145
Period size: 29 Copynumber: 2.7 Consensus size: 29
30124 GAGGAGCAGG
30134 AGGAGTGCATGGCGACCTACAAGGTCGCC
1 AGGAGTGCATGGCGACCTACAAGGTCGCC
30163 AGGAGTGCATGGCGACCTACAAGGTCGCC
1 AGGAGTGCATGGCGACCTACAAGGTCGCC
*
30192 CGGAGTGCATGGCGACCTA
1 AGGAGTGCATGGCGACCTA
30211 TGCTGGGAAG
Statistics
Matches: 47, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
29 47 1.00
ACGTcount: A:0.23, C:0.27, G:0.35, T:0.14
Consensus pattern (29 bp):
AGGAGTGCATGGCGACCTACAAGGTCGCC
Found at i:32315 original size:17 final size:17
Alignment explanation
Indices: 32293--32325 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
32283 CAATGATTTT
*
32293 TAGTATCAAATCATTAC
1 TAGTATCAAATAATTAC
32310 TAGTATCAAATAATTA
1 TAGTATCAAATAATTA
32326 AATATTTAGT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.45, C:0.12, G:0.06, T:0.36
Consensus pattern (17 bp):
TAGTATCAAATAATTAC
Found at i:32342 original size:24 final size:22
Alignment explanation
Indices: 32310--32378 Score: 77
Period size: 22 Copynumber: 3.0 Consensus size: 22
32300 AAATCATTAC
32310 TAGTATCAAATAATTAAATATT
1 TAGTATCAAATAATTAAATATT
* *
32332 TAGTAAATCAACTATTTTAAATCA-T
1 TAGT--ATCAAATA-ATTAAAT-ATT
32357 TAGTATCAAATAATTAAATATT
1 TAGTATCAAATAATTAAATATT
32379 AACAATAAAT
Statistics
Matches: 38, Mismatches: 4, Indels: 10
0.73 0.08 0.19
Matches are distributed among these distances:
21 1 0.03
22 11 0.29
23 7 0.18
24 7 0.18
25 11 0.29
26 1 0.03
ACGTcount: A:0.48, C:0.07, G:0.04, T:0.41
Consensus pattern (22 bp):
TAGTATCAAATAATTAAATATT
Found at i:32579 original size:11 final size:11
Alignment explanation
Indices: 32561--32596 Score: 56
Period size: 11 Copynumber: 3.4 Consensus size: 11
32551 TTAAATCATT
32561 ATTA-TAAATA
1 ATTACTAAATA
32571 ATTACTAAATA
1 ATTACTAAATA
*
32582 ATAACTAAATA
1 ATTACTAAATA
32593 ATTA
1 ATTA
32597 TTATAAAATC
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
10 4 0.17
11 19 0.83
ACGTcount: A:0.58, C:0.06, G:0.00, T:0.36
Consensus pattern (11 bp):
ATTACTAAATA
Found at i:32624 original size:12 final size:13
Alignment explanation
Indices: 32538--32883 Score: 168
Period size: 14 Copynumber: 25.8 Consensus size: 13
32528 TAATAATTGT
*
32538 TAAATCATTAGTA
1 TAAATCATTATTA
32551 TTAAATCATTATTA
1 -TAAATCATTATTA
32565 TAAAT-A--ATTA
1 TAAATCATTATTA
*
32575 CTAAAT-A--ATAA
1 -TAAATCATTATTA
*
32586 CTAAATAATTATTA
1 -TAAATCATTATTA
32600 TAAAATCATTATTA
1 T-AAATCATTATTA
*
32614 T-AATGATTATTA
1 TAAATCATTATTA
32626 TCAAATCATTACTAAATCA
1 T-AAATCATTA-T---T-A
*
32645 TCAAATCATTAAATATT
1 T-AAATCATT--AT-TA
32662 TAAATCATTA-T-
1 TAAATCATTATTA
*
32673 TAAATCATTTTTA
1 TAAATCATTATTA
*
32686 T-AATGATTATTA
1 TAAATCATTATTA
32698 CTAAATCATTATTA
1 -TAAATCATTATTA
*
32712 T-AATGATTATTA
1 TAAATCATTATTA
*
32724 TCAAATCATTACTA
1 T-AAATCATTATTA
*
32738 T-AATGATTATTA
1 TAAATCATTATTA
*
32750 TCAATCATTACTAAATCA
1 TAAATCATTA-T---T-A
*
32768 TCAAATCATTAAATATT
1 T-AAATCATT--AT-TA
32785 TAAATCATTA-T-
1 TAAATCATTATTA
*
32796 TAAATCATTTTTA
1 TAAATCATTATTA
*
32809 T-AATGATTATTA
1 TAAATCATTATTA
32821 CTAAATCATTATTA
1 -TAAATCATTATTA
*
32835 T-AATGATTATTA
1 TAAATCATTATTA
*
32847 TCAAATCATTACTA
1 T-AAATCATTATTA
*
32861 T-AATGATTATTA
1 TAAATCATTATTA
32873 TCAAATCATTA
1 T-AAATCATTA
32884 CTAAATCATC
Statistics
Matches: 266, Mismatches: 29, Indels: 74
0.72 0.08 0.20
Matches are distributed among these distances:
10 4 0.02
11 33 0.12
12 77 0.29
13 19 0.07
14 84 0.32
15 1 0.00
16 16 0.06
17 3 0.01
18 7 0.03
19 18 0.07
20 2 0.01
21 2 0.01
ACGTcount: A:0.45, C:0.10, G:0.02, T:0.43
Consensus pattern (13 bp):
TAAATCATTATTA
Found at i:32631 original size:26 final size:26
Alignment explanation
Indices: 32593--32883 Score: 252
Period size: 26 Copynumber: 11.7 Consensus size: 26
32583 TAACTAAATA
*
32593 ATTATTATAAAATCATTATTATAATG
1 ATTATTATCAAATCATTATTATAATG
* *
32619 ATTATTATCAAATCATTACTA-AATC
1 ATTATTATCAAATCATTATTATAATG
* * * * *
32644 ATCA-AATC-ATTAAATATT-TAA--
1 ATTATTATCAAATCATTATTATAATG
* * *
32665 ATCATTATTAAATCATTTTTATAATG
1 ATTATTATCAAATCATTATTATAATG
32691 ATTATTA-CTAAATCATTATTATAATG
1 ATTATTATC-AAATCATTATTATAATG
*
32717 ATTATTATCAAATCATTACTATAATG
1 ATTATTATCAAATCATTATTATAATG
* *
32743 ATTATTATC-AATCATTACTA-AATC
1 ATTATTATCAAATCATTATTATAATG
* * * * *
32767 ATCA-AATC-ATTAAATATT-TAA--
1 ATTATTATCAAATCATTATTATAATG
* * *
32788 ATCATTATTAAATCATTTTTATAATG
1 ATTATTATCAAATCATTATTATAATG
32814 ATTATTA-CTAAATCATTATTATAATG
1 ATTATTATC-AAATCATTATTATAATG
*
32840 ATTATTATCAAATCATTACTATAATG
1 ATTATTATCAAATCATTATTATAATG
32866 ATTATTATCAAATCATTA
1 ATTATTATCAAATCATTA
32884 CTAAATCATC
Statistics
Matches: 213, Mismatches: 36, Indels: 32
0.76 0.13 0.11
Matches are distributed among these distances:
21 8 0.04
22 4 0.02
23 31 0.15
24 15 0.07
25 17 0.08
26 136 0.64
27 2 0.01
ACGTcount: A:0.44, C:0.10, G:0.02, T:0.44
Consensus pattern (26 bp):
ATTATTATCAAATCATTATTATAATG
Found at i:32787 original size:123 final size:124
Alignment explanation
Indices: 32549--32940 Score: 677
Period size: 123 Copynumber: 3.2 Consensus size: 124
32539 AAATCATTAG
* * * * * * *
32549 TATTAAATCATTATTATAA--ATAATTACTAAATAATAACTA-AATAATTATTATAAAATCATTA
1 TATTAAATCATTTTTATAATGATTATTACTAAATCATTATTATAATGATTATTATCAAATCATTA
*
32611 TTATAATGATTATTATCAAATCATTACTAAATCATCAAATCATTAAATATTTAAATCAT
66 CTATAATGATTATTATCAAATCATTACTAAATCATCAAATCATTAAATATTTAAATCAT
32670 TATTAAATCATTTTTATAATGATTATTACTAAATCATTATTATAATGATTATTATCAAATCATTA
1 TATTAAATCATTTTTATAATGATTATTACTAAATCATTATTATAATGATTATTATCAAATCATTA
32735 CTATAATGATTATTATC-AATCATTACTAAATCATCAAATCATTAAATATTTAAATCAT
66 CTATAATGATTATTATCAAATCATTACTAAATCATCAAATCATTAAATATTTAAATCAT
32793 TATTAAATCATTTTTATAATGATTATTACTAAATCATTATTATAATGATTATTATCAAATCATTA
1 TATTAAATCATTTTTATAATGATTATTACTAAATCATTATTATAATGATTATTATCAAATCATTA
32858 CTATAATGATTATTATCAAATCATTACTAAATCATCAAATCATTAAATATTTAAATCAT
66 CTATAATGATTATTATCAAATCATTACTAAATCATCAAATCATTAAATATTTAAATCAT
32917 TATTAAATCATTTTT-TAATGATTA
1 TATTAAATCATTTTTATAATGATTA
32941 ATAAATACAT
Statistics
Matches: 259, Mismatches: 8, Indels: 6
0.95 0.03 0.02
Matches are distributed among these distances:
121 18 0.07
123 149 0.58
124 92 0.36
ACGTcount: A:0.45, C:0.10, G:0.02, T:0.43
Consensus pattern (124 bp):
TATTAAATCATTTTTATAATGATTATTACTAAATCATTATTATAATGATTATTATCAAATCATTA
CTATAATGATTATTATCAAATCATTACTAAATCATCAAATCATTAAATATTTAAATCAT
Found at i:32800 original size:11 final size:11
Alignment explanation
Indices: 32784--32928 Score: 62
Period size: 11 Copynumber: 11.9 Consensus size: 11
32774 CATTAAATAT
32784 TTAAATCATTA
1 TTAAATCATTA
*
32795 TTAAATCATTT
1 TTAAATCATTA
*
32806 TTATAATGATTA
1 TTA-AATCATTA
32818 TTACTAAATCATTA
1 -T--TAAATCATTA
*
32832 TTATAATGATTA
1 TTA-AATCATTA
32844 TTATCAAATCATTA
1 -T-T-AAATCATTA
*
32858 CTATAATGATTATTA
1 -T-TAA--ATCATTA
*
32873 TCAAATCATTA
1 TTAAATCATTA
*
32884 CTAAATCATCAAATCA
1 TTAAATCAT----T-A
32900 TTAAAT-A-T-
1 TTAAATCATTA
32908 TTAAATCATTA
1 TTAAATCATTA
32919 TTAAATCATT
1 TTAAATCATT
32929 TTTTAATGAT
Statistics
Matches: 103, Mismatches: 13, Indels: 36
0.68 0.09 0.24
Matches are distributed among these distances:
8 6 0.06
9 1 0.01
10 2 0.02
11 38 0.37
12 13 0.13
13 7 0.07
14 19 0.18
15 11 0.11
16 6 0.06
ACGTcount: A:0.43, C:0.10, G:0.02, T:0.44
Consensus pattern (11 bp):
TTAAATCATTA
Found at i:32898 original size:97 final size:94
Alignment explanation
Indices: 32700--32902 Score: 241
Period size: 97 Copynumber: 2.1 Consensus size: 94
32690 GATTATTACT
32700 AAATCATTATTATAATGATTATTATCAAATCATTACTATAATGATTATTATCAATCATTACTAAA
1 AAATCATTATTATAATGATTATTATCAAATCATTACTATAATGATTATTATCAATCATTACTAAA
* *
32765 TCATCAAATCATTAAATATTTAAATCATTATT
66 TCAT-AAATCATCAAATATTTAAATC--TATC
* *
32797 AAATCATTTTTATAATGATTATTA-CTAAATCATTATTATAATGATTATTATCAAATCATTACTA
1 AAATCATTATTATAATGATTATTATC-AAATCATTACTATAATGATTATTATC-AATCATTACTA
* * *
32861 TAATGAT-TATTATCAAATCATTACTAAATC-ATC
64 -AATCATAAATCATCAAAT-ATT--TAAATCTATC
32894 AAATCATTA
1 AAATCATTA
32903 AATATTTAAA
Statistics
Matches: 92, Mismatches: 8, Indels: 12
0.82 0.07 0.11
Matches are distributed among these distances:
96 1 0.01
97 66 0.72
98 14 0.15
99 5 0.05
100 6 0.07
ACGTcount: A:0.44, C:0.11, G:0.02, T:0.42
Consensus pattern (94 bp):
AAATCATTATTATAATGATTATTATCAAATCATTACTATAATGATTATTATCAATCATTACTAAA
TCATAAATCATCAAATATTTAAATCTATC
Found at i:35827 original size:26 final size:24
Alignment explanation
Indices: 35769--35827 Score: 64
Period size: 26 Copynumber: 2.3 Consensus size: 24
35759 CTAATAAACC
*
35769 TAATAATGATTTGATAATTACTAT
1 TAATAATGATTTGATAATTAATAT
*
35793 TAATCTAATGATTTGATATTTAATGATT
1 TAA--TAATGATTTGATAATTAAT-A-T
35821 TAATAAT
1 TAATAAT
35828 AATATGATTT
Statistics
Matches: 29, Mismatches: 2, Indels: 6
0.78 0.05 0.16
Matches are distributed among these distances:
24 3 0.10
26 21 0.72
27 1 0.03
28 4 0.14
ACGTcount: A:0.41, C:0.03, G:0.08, T:0.47
Consensus pattern (24 bp):
TAATAATGATTTGATAATTAATAT
Found at i:36708 original size:28 final size:28
Alignment explanation
Indices: 36643--36708 Score: 98
Period size: 28 Copynumber: 2.4 Consensus size: 28
36633 TTTATATAAT
*
36643 ATAATATATAACTTAAACTAATAAACTA
1 ATAATATATAACTTAAACTAACAAACTA
36671 AT-ATACTATAACTTAAACTAACAAACTA
1 ATAATA-TATAACTTAAACTAACAAACTA
*
36699 ATAATTTATA
1 ATAATATATA
36709 CTAACAAACT
Statistics
Matches: 34, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
27 3 0.09
28 29 0.85
29 2 0.06
ACGTcount: A:0.55, C:0.12, G:0.00, T:0.33
Consensus pattern (28 bp):
ATAATATATAACTTAAACTAACAAACTA
Found at i:36711 original size:21 final size:21
Alignment explanation
Indices: 36664--36726 Score: 74
Period size: 21 Copynumber: 3.0 Consensus size: 21
36654 CTTAAACTAA
* *
36664 TAAACTAATATACT-ATAACT
1 TAAACTAACAAACTAATAACT
*
36684 TAAACTAACAAACTAATAATT
1 TAAACTAACAAACTAATAACT
*
36705 TATACTAACAAACTAATTAACT
1 TAAACTAACAAACTAA-TAACT
36727 AGATTTTAGT
Statistics
Matches: 36, Mismatches: 5, Indels: 2
0.84 0.12 0.05
Matches are distributed among these distances:
20 12 0.33
21 20 0.56
22 4 0.11
ACGTcount: A:0.52, C:0.16, G:0.00, T:0.32
Consensus pattern (21 bp):
TAAACTAACAAACTAATAACT
Found at i:37286 original size:20 final size:20
Alignment explanation
Indices: 37251--37288 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
37241 ACGTGCATGG
**
37251 CCCATGCACAGTTCCCACGT
1 CCCATGCACAACTCCCACGT
37271 CCCATGCACAACTCCCAC
1 CCCATGCACAACTCCCAC
37289 ATGCATCCCA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.24, C:0.50, G:0.11, T:0.16
Consensus pattern (20 bp):
CCCATGCACAACTCCCACGT
Found at i:37300 original size:20 final size:20
Alignment explanation
Indices: 37277--37314 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
37267 ACGTCCCATG
37277 CACAACTCCCACATGCATCC
1 CACAACTCCCACATGCATCC
* *
37297 CACAAGTCCCCCATGCAT
1 CACAACTCCCACATGCAT
37315 GCTCCAATAC
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.29, C:0.47, G:0.08, T:0.16
Consensus pattern (20 bp):
CACAACTCCCACATGCATCC
Found at i:37408 original size:29 final size:29
Alignment explanation
Indices: 37366--37488 Score: 228
Period size: 29 Copynumber: 4.2 Consensus size: 29
37356 AACACCACAC
*
37366 AGGTCGCTCGGATGCCATGGCGACCTCCA
1 AGGTCGCCCGGATGCCATGGCGACCTCCA
*
37395 AGGTCACCCGGATGCCATGGCGACCTCCA
1 AGGTCGCCCGGATGCCATGGCGACCTCCA
37424 AGGTCGCCCGGATGCCATGGCGACCTCCA
1 AGGTCGCCCGGATGCCATGGCGACCTCCA
37453 AGGTCGCCCGGATGCCATGGCGACCTCCA
1 AGGTCGCCCGGATGCCATGGCGACCTCCA
37482 AGGTCGC
1 AGGTCGC
37489 TGTAGAATTC
Statistics
Matches: 91, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
29 91 1.00
ACGTcount: A:0.18, C:0.37, G:0.31, T:0.15
Consensus pattern (29 bp):
AGGTCGCCCGGATGCCATGGCGACCTCCA
Found at i:37598 original size:2 final size:2
Alignment explanation
Indices: 37591--37645 Score: 110
Period size: 2 Copynumber: 27.5 Consensus size: 2
37581 ATGAAATTGT
37591 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
37633 TA TA TA TA TA TA T
1 TA TA TA TA TA TA T
37646 GAAATTATTA
Statistics
Matches: 53, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 53 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:43907 original size:2 final size:2
Alignment explanation
Indices: 43895--44002 Score: 207
Period size: 2 Copynumber: 54.0 Consensus size: 2
43885 TCATTTATCC
*
43895 AT AT AT GT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
43937 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
43979 AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT
44003 CCCTTGTTGT
Statistics
Matches: 104, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
2 104 1.00
ACGTcount: A:0.49, C:0.00, G:0.01, T:0.50
Consensus pattern (2 bp):
AT
Found at i:46014 original size:84 final size:84
Alignment explanation
Indices: 45841--46363 Score: 595
Period size: 83 Copynumber: 6.3 Consensus size: 84
45831 GAATCGTGCG
* * * ** * * * * *
45841 AACCAAAAACCCTCGAGTTCGATTACACTCAGCTTCGAGGGCACATCATTTACAGAATAACACAA
1 AACCAAAGACCTTCGAGTTCGACTATGCTCAGC-TCCAAGGCACATCATTTGCAGCATAACTCAA
*
45906 GGCTAGAAGGGTTATCTGTC
65 GGCTAGAAGGGTTATCTGCC
* * * * * *
45926 -ACCAAAGACCTTCGAGTTTGACTATGCTCATCTCCAAGGAACATCGTTTGCAACATAGCTCAAG
1 AACCAAAGACCTTCGAGTTCGACTATGCTCAGCTCCAAGGCACATCATTTGCAGCATAACTCAAG
* * *
45990 GCAAGAAGGGCTATTTGCC
66 GCTAGAAGGGTTATCTGCC
* ** * *
46009 AACC-AAGACCTTCGAGTTCGATTACACTCAGCTCAAAGGCACATCATTTGCAGCATAGCTCAAG
1 AACCAAAGACCTTCGAGTTCGACTATGCTCAGCTCCAAGGCACATCATTTGCAGCATAACTCAAG
*
46073 GCAAGAAGGGTTATCTGCC
66 GCTAGAAGGGTTATCTGCC
* * *
46092 AACCAAAGACCATCAAGTTCGACTATGCTCAGCTCCAAGGCACATCATTTACAGCATAACTCAAG
1 AACCAAAGACCTTCGAGTTCGACTATGCTCAGCTCCAAGGCACATCATTTGCAGCATAACTCAAG
**
46157 GCTAGAATAGTTATCTGCC
66 GCTAGAAGGGTTATCTGCC
* **
46176 AACCAAAGACCATCGAGTTCGACTATGCTCAGCTCCAAGGCACATCATTTATAGCATAACTCAAG
1 AACCAAAGACCTTCGAGTTCGACTATGCTCAGCTCCAAGGCACATCATTTGCAGCATAACTCAAG
**
46241 GCTAGAAGGGTTATCTTTC
66 GCTAGAAGGGTTATCTGCC
* ** * * * * * *
46260 GA-CAAAGACCTTCGAGTTCGACTACACTCAGCTCAAAAGCATATCAATTGCAACATAACTTAAG
1 AACCAAAGACCTTCGAGTTCGACTATGCTCAGCTCCAAGGCACATCATTTGCAGCATAACTCAAG
*
46324 GCTAGAAGGGTTATCTGTC
66 GCTAGAAGGGTTATCTGCC
46343 AA-CAAAGACCTTCGAGTTCGA
1 AACCAAAGACCTTCGAGTTCGA
46364 TTACACTCAG
Statistics
Matches: 374, Mismatches: 62, Indels: 6
0.85 0.14 0.01
Matches are distributed among these distances:
83 199 0.53
84 175 0.47
ACGTcount: A:0.33, C:0.25, G:0.19, T:0.23
Consensus pattern (84 bp):
AACCAAAGACCTTCGAGTTCGACTATGCTCAGCTCCAAGGCACATCATTTGCAGCATAACTCAAG
GCTAGAAGGGTTATCTGCC
Found at i:46130 original size:167 final size:166
Alignment explanation
Indices: 45853--46441 Score: 668
Period size: 167 Copynumber: 3.6 Consensus size: 166
45843 CCAAAAACCC
* * * *
45853 TCGAGTTCGATTACACTCAGCTTCGAGGGCACATCATTTACAGAATAACACAAGGCTAGAAGGGT
1 TCGAGTTCGATTACACTCAGC-TCAAAGGCACATCATTTACAGCATAACTCAAGGCTAGAAGGGT
* * * *
45918 TATCTGTCACCAAAGACCTTCGAGTTTGACTATGCTCATCTCCAAGGAACATCGTTTGCAACATA
65 TATCTGTCACCAAAGACCTTCGAGTTCGACTATGCTCAGCTCCAAGGCACATCATTTGCAACATA
* * * *
45983 GCTCAAGGCAAGAAGGGCTATTTGCCAACCAAGACCT
130 ACTCAAGGCTAGAAGGGTTATCTGCCAACCAAGACCT
* * *
46020 TCGAGTTCGATTACACTCAGCTCAAAGGCACATCATTTGCAGCATAGCTCAAGGCAAGAAGGGTT
1 TCGAGTTCGATTACACTCAGCTCAAAGGCACATCATTTACAGCATAACTCAAGGCTAGAAGGGTT
* * * * *
46085 ATCTGCCAACCAAAGACCATCAAGTTCGACTATGCTCAGCTCCAAGGCACATCATTTACAGCATA
66 ATCTGTC-ACCAAAGACCTTCGAGTTCGACTATGCTCAGCTCCAAGGCACATCATTTGCAACATA
** *
46150 ACTCAAGGCTAGAATAGTTATCTGCCAACCAAAGACCA
130 ACTCAAGGCTAGAAGGGTTATCTGCCAACC-AAGACCT
* ** * *
46188 TCGAGTTCGACTATGCTCAGCTCCAAGGCACATCATTTATAGCATAACTCAAGGCTAGAAGGGTT
1 TCGAGTTCGATTACACTCAGCTCAAAGGCACATCATTTACAGCATAACTCAAGGCTAGAAGGGTT
* ** * * * *
46253 ATCTTTCGA-CAAAGACCTTCGAGTTCGACTACACTCAGCTCAAAAGCATATCAATTGCAACATA
66 ATCTGTC-ACCAAAGACCTTCGAGTTCGACTATGCTCAGCTCCAAGGCACATCATTTGCAACATA
* * *
46317 ACTTAAGGCTAGAAGGGTTATCTGTCAACAAAGACCT
130 ACTCAAGGCTAGAAGGGTTATCTGCCAACCAAGACCT
* * * * * * * *
46354 TCGAGTTCGATTACACTCAG-GCATA-TCA-A--ATTTAAAGCATAGCTCAAGGCAAGAAGAGCT
1 TCGAGTTCGATTACACTCAGCTCAAAGGCACATCATTTACAGCATAACTCAAGGCTAGAAGGGTT
* *
46414 ATCTGTTATCAAAGACCTTCGAGTTCGA
66 ATCTGTCACCAAAGACCTTCGAGTTCGA
46442 TTTCATATAG
Statistics
Matches: 355, Mismatches: 64, Indels: 12
0.82 0.15 0.03
Matches are distributed among these distances:
160 1 0.00
161 50 0.14
163 1 0.00
164 2 0.01
165 2 0.01
166 66 0.19
167 164 0.46
168 69 0.19
ACGTcount: A:0.33, C:0.24, G:0.19, T:0.24
Consensus pattern (166 bp):
TCGAGTTCGATTACACTCAGCTCAAAGGCACATCATTTACAGCATAACTCAAGGCTAGAAGGGTT
ATCTGTCACCAAAGACCTTCGAGTTCGACTATGCTCAGCTCCAAGGCACATCATTTGCAACATAA
CTCAAGGCTAGAAGGGTTATCTGCCAACCAAGACCT
Found at i:46288 original size:251 final size:249
Alignment explanation
Indices: 45880--46363 Score: 664
Period size: 251 Copynumber: 1.9 Consensus size: 249
45870 CAGCTTCGAG
* * * *
45880 GGCACATCATTTACAGAATAACACAAGGCTAGAAGGGTTATCTGTCACCAAAGACCTTCGAGTTT
1 GGCACATCATTTACAGAATAACACAAGGCTAGAAGAGTTATCTGCCACCAAAGACCATCGAGTTC
* * * *
45945 GACTATGCTCATCTCCAAGGAACATCGTTTGCAACATAGCTCAAGGCAAGAAGGGCTATTTGCCA
66 GACTATGCTCAGCTCCAAGGAACATCATTTACAACATAACTCAAGGCAAGAAGGGCTATTTGCCA
* * * * * *
46010 ACCAAGACCTTCGAGTTCGATTACACTCAGCTCAAAGGCACATCATTTGCAGCATAGCTCAAGGC
131 ACAAAGACCTTCGAGTTCGACTACACTCAGCTCAAAAGCACATCAATTGCAACATAACTCAAGGC
46075 AAGAAGGGTTATCTGCCAACCAAAGACCATCAAGTTCGACTATGCTCAGCTCCAA
196 AAGAAGGGTTATCTGCCAA-CAAAGACCATCAAGTTCGACTATGCTCAGCTCCAA
* * *
46130 GGCACATCATTTACAGCATAACTCAAGGCTAGAATAGTTATCTGCCAACCAAAGACCATCGAGTT
1 GGCACATCATTTACAGAATAACACAAGGCTAGAAGAGTTATCTGCC-ACCAAAGACCATCGAGTT
* * * * * *
46195 CGACTATGCTCAGCTCCAAGGCACATCATTTATAGCATAACTCAAGGCTAGAAGGGTTATCTT-T
65 CGACTATGCTCAGCTCCAAGGAACATCATTTACAACATAACTCAAGGCAAGAAGGGCTAT-TTGC
* * *
46259 CGACAAAGACCTTCGAGTTCGACTACACTCAGCTCAAAAGCATATCAATTGCAACATAACTTAAG
129 CAACAAAGACCTTCGAGTTCGACTACACTCAGCTCAAAAGCACATCAATTGCAACATAACTCAAG
* * * *
46324 GCTAGAAGGGTTATCTGTCAACAAAGACCTTCGAGTTCGA
194 GCAAGAAGGGTTATCTGCCAACAAAGACCATCAAGTTCGA
46364 TTACACTCAG
Statistics
Matches: 202, Mismatches: 30, Indels: 4
0.86 0.13 0.02
Matches are distributed among these distances:
250 58 0.29
251 142 0.70
252 2 0.01
ACGTcount: A:0.33, C:0.25, G:0.19, T:0.23
Consensus pattern (249 bp):
GGCACATCATTTACAGAATAACACAAGGCTAGAAGAGTTATCTGCCACCAAAGACCATCGAGTTC
GACTATGCTCAGCTCCAAGGAACATCATTTACAACATAACTCAAGGCAAGAAGGGCTATTTGCCA
ACAAAGACCTTCGAGTTCGACTACACTCAGCTCAAAAGCACATCAATTGCAACATAACTCAAGGC
AAGAAGGGTTATCTGCCAACAAAGACCATCAAGTTCGACTATGCTCAGCTCCAA
Found at i:50168 original size:3 final size:3
Alignment explanation
Indices: 50160--50199 Score: 53
Period size: 3 Copynumber: 12.7 Consensus size: 3
50150 TTTTTCACTA
*
50160 TAT TAT TAT TAT TAT TAT ATAT ATAT TAT TAA TAT TAT TA
1 TAT TAT TAT TAT TAT TAT -TAT -TAT TAT TAT TAT TAT TA
50200 AATTAAATAT
Statistics
Matches: 34, Mismatches: 2, Indels: 2
0.89 0.05 0.05
Matches are distributed among these distances:
3 27 0.79
4 7 0.21
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (3 bp):
TAT
Found at i:50200 original size:9 final size:9
Alignment explanation
Indices: 50163--50204 Score: 50
Period size: 9 Copynumber: 4.6 Consensus size: 9
50153 TTCACTATAT
*
50163 TATTATTAT
1 TATTATTAA
50172 TATTATATATA
1 TATTAT-TA-A
50183 TATTATTAA
1 TATTATTAA
50192 TATTATTAA
1 TATTATTAA
50201 -ATTA
1 TATTA
50205 AATATTACAA
Statistics
Matches: 30, Mismatches: 1, Indels: 5
0.83 0.03 0.14
Matches are distributed among these distances:
8 4 0.13
9 16 0.53
10 4 0.13
11 6 0.20
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (9 bp):
TATTATTAA
Found at i:51898 original size:19 final size:18
Alignment explanation
Indices: 51862--51900 Score: 51
Period size: 19 Copynumber: 2.1 Consensus size: 18
51852 TCCTTTTCTG
51862 ATATTTATAAATAAATAA
1 ATATTTATAAATAAATAA
* *
51880 ATATCTTATATATATATAA
1 ATAT-TTATAAATAAATAA
51899 AT
1 AT
51901 TAATATATTT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
18 4 0.22
19 14 0.78
ACGTcount: A:0.54, C:0.03, G:0.00, T:0.44
Consensus pattern (18 bp):
ATATTTATAAATAAATAA
Found at i:52460 original size:26 final size:28
Alignment explanation
Indices: 52395--52462 Score: 79
Period size: 28 Copynumber: 2.5 Consensus size: 28
52385 TAATTCTTTC
* *
52395 TTTTCAAAATTTTTATATATACTTATTA
1 TTTTCATAATATTTATATATACTTATTA
*
52423 TTTTCATAATATTTATATGTACATTATT-
1 TTTTCATAATATTTATATATAC-TTATTA
52451 TTTT-AT-ATATTT
1 TTTTCATAATATTT
52463 TTTATTTTTA
Statistics
Matches: 36, Mismatches: 3, Indels: 4
0.84 0.07 0.09
Matches are distributed among these distances:
26 6 0.17
27 2 0.06
28 23 0.64
29 5 0.14
ACGTcount: A:0.32, C:0.06, G:0.01, T:0.60
Consensus pattern (28 bp):
TTTTCATAATATTTATATATACTTATTA
Found at i:54565 original size:27 final size:25
Alignment explanation
Indices: 54497--54571 Score: 71
Period size: 26 Copynumber: 2.8 Consensus size: 25
54487 ATTTTACATC
54497 TTTGCATTTTGATTTTGTATTCATAA
1 TTTGCATTTT-ATTTTGTATTCATAA
* *
54523 TTT-TATGTTTACTTTTGTCTTGCATAA
1 TTTGCAT-TTTA-TTTTGTATT-CATAA
54550 TTTGCATTCTTATTTTTGTATT
1 TTTGCATT-TTA-TTTTGTATT
54572 TATGCATTTT
Statistics
Matches: 39, Mismatches: 5, Indels: 8
0.75 0.10 0.15
Matches are distributed among these distances:
25 3 0.08
26 14 0.36
27 9 0.23
28 13 0.33
ACGTcount: A:0.19, C:0.09, G:0.11, T:0.61
Consensus pattern (25 bp):
TTTGCATTTTATTTTGTATTCATAA
Found at i:60092 original size:75 final size:75
Alignment explanation
Indices: 59969--60134 Score: 219
Period size: 75 Copynumber: 2.2 Consensus size: 75
59959 AATGATGAAA
* * * ** * *
59969 CATGCTGAAAGCCCATTTCATTCATGATCAGGAATGTTGACACATTTTGAATGTTTGTATTAGCT
1 CATGCTGAAAACCCATTTCAATCATGATCAAGAATGTTGACACATTTTGAACATTTGTATGAGCC
60034 AATGTTGGGG
66 AATGTTGGGG
*
60044 CATGCTGAAAACCTC-TTTCAATCA-GAATCAAGAATGTTGACACATTTTGAACATTTGTGTGAG
1 CATGCTGAAAACC-CATTTCAATCATG-ATCAAGAATGTTGACACATTTTGAACATTTGTATGAG
60107 CCAATGTTGGGG
64 CCAATGTTGGGG
*
60119 CATGCTGAAAGCCCAT
1 CATGCTGAAAACCCAT
60135 ATCGTCATAT
Statistics
Matches: 79, Mismatches: 9, Indels: 6
0.84 0.10 0.06
Matches are distributed among these distances:
74 2 0.03
75 76 0.96
76 1 0.01
ACGTcount: A:0.29, C:0.17, G:0.22, T:0.32
Consensus pattern (75 bp):
CATGCTGAAAACCCATTTCAATCATGATCAAGAATGTTGACACATTTTGAACATTTGTATGAGCC
AATGTTGGGG
Found at i:62230 original size:46 final size:46
Alignment explanation
Indices: 62131--62821 Score: 1077
Period size: 46 Copynumber: 15.0 Consensus size: 46
62121 CTATTTCCAA
*
62131 CATCTGTAAGTCCTTCAGTGTATGATGTTTTC-AAAACCTTCGGGT
1 CATCTGTAAGTCCTTCAGTGCATGATGTTTTCAAAAACCTTCGGGT
* *
62176 CATCTGTAAGTCCTTCAGTGCATGATGTTATCAAAAACCTTTGGGT
1 CATCTGTAAGTCCTTCAGTGCATGATGTTTTCAAAAACCTTCGGGT
62222 CATCTGTAAGTCCTTCAGTGCATGATGTTTTCAAAAACCTTCGGGT
1 CATCTGTAAGTCCTTCAGTGCATGATGTTTTCAAAAACCTTCGGGT
* *
62268 CATCTGTAAGCCCTTCAGTGCATGATGTTATCAAAAACCTTCGGGT
1 CATCTGTAAGTCCTTCAGTGCATGATGTTTTCAAAAACCTTCGGGT
*
62314 CATCTATAAGTCCTTCAGTGCATGATGTTTTCAAAAACCTTCGGGT
1 CATCTGTAAGTCCTTCAGTGCATGATGTTTTCAAAAACCTTCGGGT
* *
62360 CATCTGTAAGTCCTTCAGTGCATGATGTTTTCAAAAAACCTCCAGGT
1 CATCTGTAAGTCCTTCAGTGCATGATGTTTTC-AAAAACCTTCGGGT
*
62407 CATCTGTAAGCCCTTCAGTGCATGATGTTTTCAAAAACCTTCGGGT
1 CATCTGTAAGTCCTTCAGTGCATGATGTTTTCAAAAACCTTCGGGT
*
62453 CATCTGTAAGTCCTTCAGTGCATGATGTTATCAAAAACCTTCGGGT
1 CATCTGTAAGTCCTTCAGTGCATGATGTTTTCAAAAACCTTCGGGT
* *
62499 CATCTGTAAGCCCTTCAGTGCATGATGTTTTCAAAAAAAAACTTCGGGT
1 CATCTGTAAGTCCTTCAGTGCATGATGTTTTC---AAAAACCTTCGGGT
* *
62548 CATCTGTAAGTCTTTCAGTGCATGATGTTTTC-AAAACCTCCGGGT
1 CATCTGTAAGTCCTTCAGTGCATGATGTTTTCAAAAACCTTCGGGT
* *
62593 TATCTGTAAGCCCTTCAGTGCATGATGTTTTCAAAAACCTTCGGGT
1 CATCTGTAAGTCCTTCAGTGCATGATGTTTTCAAAAACCTTCGGGT
*
62639 CATCTGTAAGCCCTTCAGTGCATGATGTTTTCAAAAAAAACCTTCGGGT
1 CATCTGTAAGTCCTTCAGTGCATGATGTTTTC---AAAAACCTTCGGGT
* *
62688 CATCTGTAAGTCCTTCAGTGGATGATGTTTTC-AAAACCTTTGGGT
1 CATCTGTAAGTCCTTCAGTGCATGATGTTTTCAAAAACCTTCGGGT
* *
62733 CATCTGTAAGCCCTTCAGTGCGTGATGTTTTC-AAAACCTTCGGGT
1 CATCTGTAAGTCCTTCAGTGCATGATGTTTTCAAAAACCTTCGGGT
* *
62778 CATCTGTAAGCCCTTCAGTGCATGATGTTTT-TAAAACCTTCGGG
1 CATCTGTAAGTCCTTCAGTGCATGATGTTTTCAAAAACCTTCGGG
62822 AGCTTTTTGA
Statistics
Matches: 598, Mismatches: 38, Indels: 20
0.91 0.06 0.03
Matches are distributed among these distances:
45 165 0.28
46 303 0.51
47 43 0.07
49 87 0.15
ACGTcount: A:0.25, C:0.22, G:0.20, T:0.34
Consensus pattern (46 bp):
CATCTGTAAGTCCTTCAGTGCATGATGTTTTCAAAAACCTTCGGGT
Found at i:62447 original size:185 final size:182
Alignment explanation
Indices: 62131--62821 Score: 1105
Period size: 185 Copynumber: 3.7 Consensus size: 182
62121 CTATTTCCAA
*
62131 CATCTGTAAGTCCTTCAGTGTATGATGTTTTCAAAACCTTCGGGTCATCTGTAAGTCCTTCAGTG
1 CATCTGTAAGTCCTTCAGTGCATGATGTTTTCAAAACCTTCGGGTCATCTGTAAGTCCTTCAGTG
* ** *
62196 CATGATGTTATCAAAAACCTTTGGGTCATCTGTAAGTCCTTCAGTGCATGATGTTTTCAAAAACC
66 CATGATGTTTTC-AAAACCTCCGGGTCATCTGTAAGCCCTTCAGTGCATGATGTTTTCAAAAACC
62261 TTCGGGTCATCTGTAAGCCCTTCAGTGCATGATGTTATCAAAAACCTTCGGGT
130 TTCGGGTCATCTGTAAGCCCTTCAGTGCATGATGTTATCAAAAACCTTCGGGT
*
62314 CATCTATAAGTCCTTCAGTGCATGATGTTTTCAAAAACCTTCGGGTCATCTGTAAGTCCTTCAGT
1 CATCTGTAAGTCCTTCAGTGCATGATGTTTTC-AAAACCTTCGGGTCATCTGTAAGTCCTTCAGT
*
62379 GCATGATGTTTTCAAAAAACCTCCAGGTCATCTGTAAGCCCTTCAGTGCATGATGTTTTCAAAAA
65 GCATGATGTTTTC--AAAACCTCCGGGTCATCTGTAAGCCCTTCAGTGCATGATGTTTTCAAAAA
*
62444 CCTTCGGGTCATCTGTAAGTCCTTCAGTGCATGATGTTATCAAAAACCTTCGGGT
128 CCTTCGGGTCATCTGTAAGCCCTTCAGTGCATGATGTTATCAAAAACCTTCGGGT
* * *
62499 CATCTGTAAGCCCTTCAGTGCATGATGTTTTCAAAAAAAAACTTCGGGTCATCTGTAAGTCTTTC
1 CATCTGTAAGTCCTTCAGTGCATGATGTTTTC----AAAACCTTCGGGTCATCTGTAAGTCCTTC
*
62564 AGTGCATGATGTTTTCAAAACCTCCGGGTTATCTGTAAGCCCTTCAGTGCATGATGTTTTCAAAA
62 AGTGCATGATGTTTTCAAAACCTCCGGGTCATCTGTAAGCCCTTCAGTGCATGATGTTTTCAAAA
*
62629 ACCTTCGGGTCATCTGTAAGCCCTTCAGTGCATGATGTTTTCAAAAAAAACCTTCGGGT
127 ACCTTCGGGTCATCTGTAAGCCCTTCAGTGCATGATGTTATC---AAAAACCTTCGGGT
* * *
62688 CATCTGTAAGTCCTTCAGTGGATGATGTTTTCAAAACCTTTGGGTCATCTGTAAGCCCTTCAGTG
1 CATCTGTAAGTCCTTCAGTGCATGATGTTTTCAAAACCTTCGGGTCATCTGTAAGTCCTTCAGTG
* * *
62753 CGTGATGTTTTCAAAACCTTCGGGTCATCTGTAAGCCCTTCAGTGCATGATGTTTT-TAAAACCT
66 CATGATGTTTTCAAAACCTCCGGGTCATCTGTAAGCCCTTCAGTGCATGATGTTTTCAAAAACCT
62817 TCGGG
131 TCGGG
62822 AGCTTTTTGA
Statistics
Matches: 474, Mismatches: 26, Indels: 15
0.92 0.05 0.03
Matches are distributed among these distances:
183 30 0.06
184 56 0.12
185 213 0.45
186 87 0.18
188 44 0.09
189 44 0.09
ACGTcount: A:0.25, C:0.22, G:0.20, T:0.34
Consensus pattern (182 bp):
CATCTGTAAGTCCTTCAGTGCATGATGTTTTCAAAACCTTCGGGTCATCTGTAAGTCCTTCAGTG
CATGATGTTTTCAAAACCTCCGGGTCATCTGTAAGCCCTTCAGTGCATGATGTTTTCAAAAACCT
TCGGGTCATCTGTAAGCCCTTCAGTGCATGATGTTATCAAAAACCTTCGGGT
Found at i:62472 original size:139 final size:138
Alignment explanation
Indices: 62131--62821 Score: 1102
Period size: 139 Copynumber: 5.0 Consensus size: 138
62121 CTATTTCCAA
*
62131 CATCTGTAAGTCCTTCAGTGTATGATGTTTTCAAAACCTTCGGGTCATCTGTAAGTCCTTCAGTG
1 CATCTGTAAGTCCTTCAGTGCATGATGTTTTCAAAACCTTCGGGTCATCTGTAAGTCCTTCAGTG
* * *
62196 CATGATGTTATCAAAAACCTTTGGGTCATCTGTAAGTCCTTCAGTGCATGATGTTTTC-AAAAAC
66 CATGATGTTTTCAAAAACCTTCGGGTCATCTGTAAGCCCTTCAGTGCATGATGTTTTCAAAAAAC
62260 CTTCGGGT
131 CTTCGGGT
* * *
62268 CATCTGTAAGCCCTTCAGTGCATGATGTTATCAAAAACCTTCGGGTCATCTATAAGTCCTTCAGT
1 CATCTGTAAGTCCTTCAGTGCATGATGTTTTC-AAAACCTTCGGGTCATCTGTAAGTCCTTCAGT
*
62333 GCATGATGTTTTCAAAAACCTTCGGGTCATCTGTAAGTCCTTCAGTGCATGATGTTTTCAAAAAA
65 GCATGATGTTTTCAAAAACCTTCGGGTCATCTGTAAGCCCTTCAGTGCATGATGTTTTCAAAAAA
* *
62398 CCTCCAGGT
130 CCTTCGGGT
*
62407 CATCTGTAAGCCCTTCAGTGCATGATGTTTTCAAAAACCTTCGGGTCATCTGTAAGTCCTTCAGT
1 CATCTGTAAGTCCTTCAGTGCATGATGTTTTC-AAAACCTTCGGGTCATCTGTAAGTCCTTCAGT
*
62472 GCATGATGTTATCAAAAACCTTCGGGTCATCTGTAAGCCCTTCAGTGCATGATGTTTTCAAAAAA
65 GCATGATGTTTTCAAAAACCTTCGGGTCATCTGTAAGCCCTTCAGTGCATGATGTTTTC--AAAA
*
62537 AAACTTCGGGT
128 AACCTTCGGGT
* * * *
62548 CATCTGTAAGTCTTTCAGTGCATGATGTTTTCAAAACCTCCGGGTTATCTGTAAGCCCTTCAGTG
1 CATCTGTAAGTCCTTCAGTGCATGATGTTTTCAAAACCTTCGGGTCATCTGTAAGTCCTTCAGTG
62613 CATGATGTTTTCAAAAACCTTCGGGTCATCTGTAAGCCCTTCAGTGCATGATGTTTTCAAAAAAA
66 CATGATGTTTTCAAAAACCTTCGGGTCATCTGTAAGCCCTTCAGTGCATGATGTTTTC--AAAAA
62678 ACCTTCGGGT
129 ACCTTCGGGT
* * *
62688 CATCTGTAAGTCCTTCAGTGGATGATGTTTTCAAAACCTTTGGGTCATCTGTAAGCCCTTCAGTG
1 CATCTGTAAGTCCTTCAGTGCATGATGTTTTCAAAACCTTCGGGTCATCTGTAAGTCCTTCAGTG
* *
62753 CGTGATGTTTTC-AAAACCTTCGGGTCATCTGTAAGCCCTTCAGTGCATGATGTTTT--TAAAAC
66 CATGATGTTTTCAAAAACCTTCGGGTCATCTGTAAGCCCTTCAGTGCATGATGTTTTCAAAAAAC
62815 CTTCGGG
131 CTTCGGG
62822 AGCTTTTTGA
Statistics
Matches: 521, Mismatches: 29, Indels: 10
0.93 0.05 0.02
Matches are distributed among these distances:
135 12 0.02
137 29 0.06
138 88 0.17
139 176 0.34
140 174 0.33
141 42 0.08
ACGTcount: A:0.25, C:0.22, G:0.20, T:0.34
Consensus pattern (138 bp):
CATCTGTAAGTCCTTCAGTGCATGATGTTTTCAAAACCTTCGGGTCATCTGTAAGTCCTTCAGTG
CATGATGTTTTCAAAAACCTTCGGGTCATCTGTAAGCCCTTCAGTGCATGATGTTTTCAAAAAAC
CTTCGGGT
Found at i:63037 original size:3 final size:3
Alignment explanation
Indices: 63029--63069 Score: 57
Period size: 3 Copynumber: 13.7 Consensus size: 3
63019 TTTTTCACTA
*
63029 TAT TAT TAT TAT TAT TAT TA- TAT ATAT TAT TAA TAT TAT TA
1 TAT TAT TAT TAT TAT TAT TAT TAT -TAT TAT TAT TAT TAT TA
63070 AATTAAATAT
Statistics
Matches: 34, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
2 2 0.06
3 29 0.85
4 3 0.09
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (3 bp):
TAT
Found at i:63070 original size:9 final size:9
Alignment explanation
Indices: 63029--63074 Score: 51
Period size: 9 Copynumber: 5.2 Consensus size: 9
63019 TTTTTCACTA
*
63029 TATTATTAT
1 TATTAATAT
*
63038 TATTATTAT
1 TATTAATAT
63047 TA-TATATAT
1 TATTA-ATAT
63056 TATTAATAT
1 TATTAATAT
63065 TATTAA-AT
1 TATTAATAT
63073 TA
1 TA
63075 AATATTACAA
Statistics
Matches: 34, Mismatches: 1, Indels: 5
0.85 0.03 0.12
Matches are distributed among these distances:
8 6 0.18
9 26 0.76
10 2 0.06
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (9 bp):
TATTAATAT
Found at i:64687 original size:137 final size:139
Alignment explanation
Indices: 64534--64785 Score: 343
Period size: 137 Copynumber: 1.8 Consensus size: 139
64524 TATTTATTTA
* * * *
64534 TTTTTGATATTAAG-AAA-TGGCAGTCTTAAAGCAACTAGATGTCCATTTTCTGATATTTTTAAA
1 TTTTTAATATTAAGAAAAGTGGCA-TCTTAAAGCAACTAGAAGT-CATTTTATGATATTTATAAA
* * *
64597 TAAATAAATATTTTACTTT-TATAAAT-TATATATATTAATCTATTTT-TTAATTATTTTTAGAT
64 TAAATAAATATCTTA-TTTATATAAATATATATAAATTAATATATTTTCTTAATTATTTTTAGAT
64659 AAATATTTTATT
128 AAATATTTTATT
** *
64671 TTTTTAATATTAAGAAAAGTGTTATCTTAAAGCACCTAGAAGTCATTTTATGATATTTATAAATA
1 TTTTTAATATTAAGAAAAGTGGCATCTTAAAGCAACTAGAAGTCATTTTATGATATTTATAAATA
*
64736 AATAAATATCTTATTTATATATATATATATAAATTAATATATTTTCTTAA
66 AATAAATATCTTATTTATATAAATATATATAAATTAATATATTTTCTTAA
64786 AATTATAAAT
Statistics
Matches: 99, Mismatches: 11, Indels: 8
0.84 0.09 0.07
Matches are distributed among these distances:
136 3 0.03
137 51 0.52
138 38 0.38
139 7 0.07
ACGTcount: A:0.39, C:0.06, G:0.07, T:0.48
Consensus pattern (139 bp):
TTTTTAATATTAAGAAAAGTGGCATCTTAAAGCAACTAGAAGTCATTTTATGATATTTATAAATA
AATAAATATCTTATTTATATAAATATATATAAATTAATATATTTTCTTAATTATTTTTAGATAAA
TATTTTATT
Found at i:68836 original size:23 final size:23
Alignment explanation
Indices: 68789--68838 Score: 82
Period size: 23 Copynumber: 2.2 Consensus size: 23
68779 AATAACATAT
**
68789 TAGGTAGCGCTTATATAATGTAA
1 TAGGTAGCGCTTATATAATAAAA
68812 TAGGTAGCGCTTATATAATAAAA
1 TAGGTAGCGCTTATATAATAAAA
68835 TAGG
1 TAGG
68839 CATTTAACCG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
23 25 1.00
ACGTcount: A:0.38, C:0.08, G:0.22, T:0.32
Consensus pattern (23 bp):
TAGGTAGCGCTTATATAATAAAA
Found at i:68898 original size:87 final size:87
Alignment explanation
Indices: 68752--68914 Score: 274
Period size: 87 Copynumber: 1.9 Consensus size: 87
68742 TATGTTATAT
*
68752 CATTTAACCGAAAATATTATCAATCACAATAACATATTAGGTAGCGCTTATATAATGTAATAGGT
1 CATTTAACCGAAAATATTATCAATCACAATAACAAATTAGGTAGCGCTTATATAATGTAATAGGT
68817 AGCGCTTATATAATAAAATAGG
66 AGCGCTTATATAATAAAATAGG
* * *
68839 CATTTAACCGGAAATATTATCAAAT-ACAATAATAAATTAGGTAGCGTTTATATAATGTAATAGG
1 CATTTAACCGAAAATATTATC-AATCACAATAACAAATTAGGTAGCGCTTATATAATGTAATAGG
68903 TAGCGCTTATAT
65 TAGCGCTTATAT
68915 TGACCTATTT
Statistics
Matches: 71, Mismatches: 4, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
87 68 0.96
88 3 0.04
ACGTcount: A:0.42, C:0.12, G:0.14, T:0.33
Consensus pattern (87 bp):
CATTTAACCGAAAATATTATCAATCACAATAACAAATTAGGTAGCGCTTATATAATGTAATAGGT
AGCGCTTATATAATAAAATAGG
Found at i:69146 original size:14 final size:15
Alignment explanation
Indices: 69127--69155 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
69117 TATTTGCTAA
69127 TTAACCGG-TATATT
1 TTAACCGGTTATATT
69141 TTAACCGGTTATATT
1 TTAACCGGTTATATT
69156 GTAAATTTAC
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 8 0.57
15 6 0.43
ACGTcount: A:0.28, C:0.14, G:0.14, T:0.45
Consensus pattern (15 bp):
TTAACCGGTTATATT
Found at i:69408 original size:200 final size:195
Alignment explanation
Indices: 68909--69431 Score: 581
Period size: 200 Copynumber: 2.6 Consensus size: 195
68899 TAGGTAGCGC
* * * *
68909 TTATATTGACCTATTTCTCATAAAACCGGTAAATTTAAACCGGTTACATT-ATAAATTGACCTAT
1 TTATGTTGACCTATTTCTCAT-AAACCGGTATATTT-TACCGGTTACATTGA-AAATTTACCTAT
*
68973 TACATTATAAATATCGGTTTCGAT-ATTTCCGGGATCGATACAATTTT-AAATGTATCGACACTT
63 TACATTATAATTATCGGTTTCGATGATTT-CGGGATCGATAC-ATTTTAAAATGTATCGACACTT
* * * * * * *
69036 TATGCGTGCAACTCGTTTGTGCTTTATTTTGGAAAAAAGTATCGACACATATTTAAAGAGTGTCG
126 TATGCATACAACTCGTTTGTCCTTCATTTTGGAAAAAAGTATCGACACAAATTAAAAAAGTGTCG
69101 ATACA
191 ATACA
* * * * * * * *
69106 TAATGTAGACATATTTGCTAATTAACCGGTATATTTTAACCGGTTATATTGTAAATTTACCTGTT
1 TTATGTTGACCTATTT-CTCATAAACCGGTATATTTT-ACCGGTTACATTGAAAATTTACCTATT
* * *
69171 ACATAATAATTATCGATTTCGATG-TTTCGATGATCGATACATTTTACAAATGTATCGACACTTT
64 ACATTATAATTATCGGTTTCGATGATTTCG-GGATCGATACATTTTA-AAATGTATCGACACTTT
* *
69235 ATGCATACACCTCGTTT-TCCATTCATTTTTGGAAAAATGTATCGACACAAATTAAAAAAGTGTC
127 ATGCATACAACTCGTTTGTCC-TTCA-TTTTGGAAAAAAGTATCGACACAAATTAAAAAAGTGTC
*
69299 GATACT
190 GATACA
*
69305 TTATGTTGACCTATTCTCTCATGAACCCGGTATATTTCTACCGGTTACATTGAAAATTTACCTAT
1 TTATGTTGACCTATT-TCTCAT-AAACCGGTATATTT-TACCGGTTACATTGAAAATTTACCTAT
* ** *
69370 TACATTATAATTATCGGTCTCTTTGATTTTGGGATCGATAC-TTGTTATAAATGTATCGACAC
63 TACATTATAATTATCGGTTTCGATGATTTCGGGATCGATACATT-TTA-AAATGTATCGACAC
69432 AAAATCTAAC
Statistics
Matches: 269, Mismatches: 43, Indels: 25
0.80 0.13 0.07
Matches are distributed among these distances:
196 7 0.03
197 80 0.30
198 38 0.14
199 57 0.21
200 82 0.30
201 5 0.02
ACGTcount: A:0.32, C:0.16, G:0.14, T:0.38
Consensus pattern (195 bp):
TTATGTTGACCTATTTCTCATAAACCGGTATATTTTACCGGTTACATTGAAAATTTACCTATTAC
ATTATAATTATCGGTTTCGATGATTTCGGGATCGATACATTTTAAAATGTATCGACACTTTATGC
ATACAACTCGTTTGTCCTTCATTTTGGAAAAAAGTATCGACACAAATTAAAAAAGTGTCGATACA
Found at i:73112 original size:200 final size:199
Alignment explanation
Indices: 72578--73715 Score: 1445
Period size: 200 Copynumber: 5.7 Consensus size: 199
72568 GTAATTTTAA
* * * * * * **
72578 AAAGTATCGACACTAATTTAAAAAGTGTCGATATATTATGTAGACCTATTTTCTCATAA-AACCG
1 AAAGTATCGACACAAATGTATAAAGTATCGATACATTATGTATACCT-TTTT-TTTTAATAACCG
* * * * * * * *
72642 GTAAATTTAAACTGGTTACATTGTAAAGTGACCTATTACATTATAATTACGGGTTTCGATGTTTT
64 GTATATTTAGACCGGTTACATTGTTATGTTACCTATTACATTATAATTATGTGTTTCGATGTTTT
* * * * *
72707 TAGGATCGGCACTTTTTCTATATGTATCGACACTTTTTCGTGAACTTGTTTGGAAAATTTATTAT
129 TGGGATCGACACTTGTTATAAATGTATCGACACTTTTTCGTGAACTTGTTTGGAAAATTTATTAT
72772 GGACAT
194 GGACAT
* * *
72778 AAAGTGTTGACACAAATGTATAAAGTATCGATACATTATGTATA-C-ATTTTTTTAATAACCGGT
1 AAAGTATCGACACAAATGTATAAAGTATCGATACATTATGTATACCTTTTTTTTTAATAACCGGT
72841 ATATTTAGACCGGTTACATTGTTATGTTACCTATTACATTATAATTATGTGTTTCGATGTTTTTG
66 ATATTTAGACCGGTTACATTGTTATGTTACCTATTACATTATAATTATGTGTTTCGATGTTTTTG
* *
72906 GGATCGACACTTGTTATAAATGTATCAACACTATTTCGTGAACTTGTTTGGAAAATTTATTATGG
131 GGATCGACACTTGTTATAAATGTATCGACACTTTTTCGTGAACTTGTTTGGAAAATTTATTATGG
72971 ACAT
196 ACAT
*
72975 AAAGTGTCGACACAAATGTATAAAGTATCGATACATTATGTATACCTTTCTTTTTTAATAACCGG
1 AAAGTATCGACACAAATGTATAAAGTATCGATACATTATGTATACCTTT-TTTTTTAATAACCGG
*
73040 TATATTTAGACCGGTTACATTGTTATGTTACCTATTACATTATAATCATGTGTTTCGATGTTTTT
65 TATATTTAGACCGGTTACATTGTTATGTTACCTATTACATTATAATTATGTGTTTCGATGTTTTT
73105 GGGATCGACACTTGTTATAAATGTATCGACACTTTTTCGTGAACTTGTTTGGAAAATTTATTATG
130 GGGATCGACACTTGTTATAAATGTATCGACACTTTTTCGTGAACTTGTTTGGAAAATTTATTATG
73170 GACAT
195 GACAT
*
73175 AAAGTGTCGACACAAATGTATAAAGTATCGATACATTATGTATACCTTTCTTTTTTAATAACCGG
1 AAAGTATCGACACAAATGTATAAAGTATCGATACATTATGTATACCTTT-TTTTTTAATAACCGG
* * *
73240 TATATTTAGGCCGGTTACATTGTTATGTTTCCTATTACATTATAATTATGTGTTTCGATGCTTTT
65 TATATTTAGACCGGTTACATTGTTATGTTACCTATTACATTATAATTATGTGTTTCGATGTTTTT
*
73305 GGGATCGACACTTGTTATAAATGTATCGACACGTTTTTCGT-ACACTTGGTTTGGAAACA--CAT
130 GGGATCGACACTTGTTATAAATGTATCGACAC-TTTTTCGTGA-ACTT-GTTTGGAAA-ATTTAT
73367 TATGGACA-
191 TATGGACAT
* * * ** ** *
73375 ACATGTATCGACACAAATGAATAAAGTGTCGATACA-TATTGTAGGCCTATTTTCTCATAA-AAT
1 A-AAGTATCGACACAAATGTATAAAGTATCGATACATTA-TGTATACCT-TTTT-TTTTAATAAC
* * * * * * * **
73438 CGGTAAATTTAAACCGATTACATTGTAAAGTGACCTATTACATTATAGTTACATGTTTCGATGTT
62 CGGTATATTTAGACCGGTTACATTGTTATGTTACCTATTACATTATAATTATGTGTTTCGATGTT
* *
73503 TTTGGGATCGACACTTGATATAAATGTATCGACACTTATTT-GTGAACTTGTTTTGGTTGGAAAT
127 TTTGGGATCGACACTTGTTATAAATGTATCGACACTT-TTTCGTGAACTTG-TTT-G--GAAAAT
* *
73567 TACATTATGGACAC
187 T-TATTATGGACAT
* * * * * *
73581 AAAGTATCGACACAAATGTATAAAGTGTTGATACTTTATGTATACC-TCTTTTCTCATAAACCGG
1 AAAGTATCGACACAAATGTATAAAGTATCGATACATTATGTATACCTTTTTTTTTAAT-AACCGG
* * *
73645 TATATTTAGACCGGTTACATTGTTATTTTACATATTACATTATAATTATAG-GTCTCGATGTTTT
65 TATATTTAGACCGGTTACATTGTTATGTTACCTATTACATTATAATTAT-GTGTTTCGATGTTTT
73709 TGGGATC
129 TGGGATC
73716 CATACTTTAT
Statistics
Matches: 830, Mismatches: 82, Indels: 48
0.86 0.09 0.05
Matches are distributed among these distances:
196 4 0.00
197 172 0.21
198 1 0.00
199 3 0.00
200 356 0.43
201 155 0.19
202 19 0.02
203 7 0.01
204 63 0.08
205 47 0.06
206 3 0.00
ACGTcount: A:0.31, C:0.14, G:0.16, T:0.40
Consensus pattern (199 bp):
AAAGTATCGACACAAATGTATAAAGTATCGATACATTATGTATACCTTTTTTTTTAATAACCGGT
ATATTTAGACCGGTTACATTGTTATGTTACCTATTACATTATAATTATGTGTTTCGATGTTTTTG
GGATCGACACTTGTTATAAATGTATCGACACTTTTTCGTGAACTTGTTTGGAAAATTTATTATGG
ACAT
Found at i:73865 original size:36 final size:36
Alignment explanation
Indices: 73818--73920 Score: 197
Period size: 36 Copynumber: 2.9 Consensus size: 36
73808 AATCTGCAGC
73818 TGCTTCTACATCAAGTATGTTTCGCTAAGACGGTTT
1 TGCTTCTACATCAAGTATGTTTCGCTAAGACGGTTT
73854 TGCTTCTACATCAAGTATGTTTCGCTAAGACGGTTT
1 TGCTTCTACATCAAGTATGTTTCGCTAAGACGGTTT
*
73890 TGCTTATACATCAAGTATGTTTCGCTAAGAC
1 TGCTTCTACATCAAGTATGTTTCGCTAAGAC
73921 TGTATAAGTC
Statistics
Matches: 66, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
36 66 1.00
ACGTcount: A:0.24, C:0.19, G:0.18, T:0.38
Consensus pattern (36 bp):
TGCTTCTACATCAAGTATGTTTCGCTAAGACGGTTT
Found at i:75079 original size:6 final size:6
Alignment explanation
Indices: 75068--75141 Score: 76
Period size: 6 Copynumber: 12.3 Consensus size: 6
75058 ACTTGTTTGG
* * * *
75068 ATCATC ATCATC GTTATC ATCATC ATTATC ATCATC ATCATC ATAATC
1 ATCATC ATCATC ATCATC ATCATC ATCATC ATCATC ATCATC ATCATC
* * * *
75116 ATCTTC ATCTTC ATCGTC ATCTTC AT
1 ATCATC ATCATC ATCATC ATCATC AT
75142 TGACCGCTTG
Statistics
Matches: 57, Mismatches: 11, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
6 57 1.00
ACGTcount: A:0.28, C:0.28, G:0.03, T:0.41
Consensus pattern (6 bp):
ATCATC
Found at i:76306 original size:15 final size:15
Alignment explanation
Indices: 76278--76327 Score: 73
Period size: 15 Copynumber: 3.3 Consensus size: 15
76268 ATTTCCTCAT
* *
76278 AAGAGCTGGATTGAG
1 AAGAGATGGGTTGAG
*
76293 AAGAGGTGGGTTGAG
1 AAGAGATGGGTTGAG
76308 AAGAGATGGGTTGAG
1 AAGAGATGGGTTGAG
76323 AAGAG
1 AAGAG
76328 CCCCGATTCT
Statistics
Matches: 32, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
15 32 1.00
ACGTcount: A:0.34, C:0.02, G:0.46, T:0.18
Consensus pattern (15 bp):
AAGAGATGGGTTGAG
Found at i:77067 original size:198 final size:198
Alignment explanation
Indices: 76803--77758 Score: 1530
Period size: 198 Copynumber: 4.9 Consensus size: 198
76793 TGACCATTTA
* * *
76803 CATTCTGGACA-AAACGTATCGACATAAATTCAA-AGAGTGTCGATACTTTATGCATACCTGTTT
1 CATTCTGGACACAAA-GTATCGACACAAATTCAACA-AGTGTCGATACTTTATGTACACCTGTTT
*
76866 TCTCATAAACCGGTGTATTTAGACCGGTTAGATTCATACTTTACCTATTACATTATAATTATGGG
64 TCTCATAAACCGGTGTATTTAGACCGGTTAGATTCATAATTTACCTATTACATTATAATTATGGG
*
76931 TCTCGATGGTTTTGGGATCGATACTTTTTATAAATGTATCGACACATTATAGTGACCTTGGTAAG
129 TCTCGATGTTTTTGGGATCGATACTTTTTATAAATGTATCGACACATTATAGTGACCTTGGTAAG
76996 GAAAT
194 GAAAT
* * * *
77001 TATTCTGGACACAAAGTATTGACACAAATTAAACAAGTGTCGATACTTTATGTACACCTATTTTC
1 CATTCTGGACACAAAGTATCGACACAAATTCAACAAGTGTCGATACTTTATGTACACCTGTTTTC
** * *
77066 TCATAAACCGGCATATTTAGATCGGTTAGATTGATAATTTACCTATTACATTATAATTATGGGTC
66 TCATAAACCGGTGTATTTAGACCGGTTAGATTCATAATTTACCTATTACATTATAATTATGGGTC
* * *
77131 TCGATGTTTTTGGGATCAATACTTTTTATAAATGTATTG--ACATTATGGTGACCTTGGTAAGGA
131 TCGATGTTTTTGGGATCGATACTTTTTATAAATGTATCGACACATTATAGTGACCTTGGTAAGGA
77194 AAT
196 AAT
* * *
77197 CATTATGGACACAAAGTATCGACACAAATTCAACAAGTGTCGATACTTTATGTATACTTG-TTTC
1 CATTCTGGACACAAAGTATCGACACAAATTCAACAAGTGTCGATACTTTATGTACACCTGTTTTC
*
77261 TCATAAACCGGTGTATTTAGACCGGTTAGATTCATAATTTACCTATTAAATTATAATTATGGGTC
66 TCATAAACCGGTGTATTTAGACCGGTTAGATTCATAATTTACCTATTACATTATAATTATGGGTC
* *
77326 TCGATGTTTTTGGGATCTATACTTGTTATAAATGTATCGACACATT-TCCA-TG-CACTTGGTAA
131 TCGATGTTTTTGGGATCGATACTTTTTATAAATGTATCGACACATTAT--AGTGAC-CTTGGTAA
77388 GGAAAT
193 GGAAAT
*
77394 CATTCTGGACACAAAGTATCGACACAAATTCAACAAGTGTTGATACTTTATGTACACCTGTTTTC
1 CATTCTGGACACAAAGTATCGACACAAATTCAACAAGTGTCGATACTTTATGTACACCTGTTTTC
77459 TCATAAACCGGTGTATTTAGACCGGTTAGATTCATAATTTACCTATTACATTATAATTATGGGTC
66 TCATAAACCGGTGTATTTAGACCGGTTAGATTCATAATTTACCTATTACATTATAATTATGGGTC
* *
77524 TTGATGTTTTTGGGATCGATACTTTTTATAAATGTATCG--AC---AT-G-CA-CTTGGTAAGGA
131 TCGATGTTTTTGGGATCGATACTTTTTATAAATGTATCGACACATTATAGTGACCTTGGTAAGGA
77581 AAT
196 AAT
77584 CATTCTGGACACAAAGTATCGACACAAATTCAACAAGTGTCGATACTTTATGTACACCTGTTTTC
1 CATTCTGGACACAAAGTATCGACACAAATTCAACAAGTGTCGATACTTTATGTACACCTGTTTTC
77649 TCATAAACCGGTGTATTTAGACCGGTTAGATTCATAATTTACCTATTACATTATAATTATGGGTC
66 TCATAAACCGGTGTATTTAGACCGGTTAGATTCATAATTTACCTATTACATTATAATTATGGGTC
77714 TCGATGTTTTTGGGATCGATACTTTTTATAAATGTATCGACACAT
131 TCGATGTTTTTGGGATCGATACTTTTTATAAATGTATCGACACAT
77759 ATGTTTACCA
Statistics
Matches: 700, Mismatches: 43, Indels: 34
0.90 0.06 0.04
Matches are distributed among these distances:
190 181 0.26
192 2 0.00
194 1 0.00
195 100 0.14
196 83 0.12
197 77 0.11
198 252 0.36
199 4 0.01
ACGTcount: A:0.31, C:0.16, G:0.17, T:0.37
Consensus pattern (198 bp):
CATTCTGGACACAAAGTATCGACACAAATTCAACAAGTGTCGATACTTTATGTACACCTGTTTTC
TCATAAACCGGTGTATTTAGACCGGTTAGATTCATAATTTACCTATTACATTATAATTATGGGTC
TCGATGTTTTTGGGATCGATACTTTTTATAAATGTATCGACACATTATAGTGACCTTGGTAAGGA
AAT
Found at i:77357 original size:393 final size:387
Alignment explanation
Indices: 76803--77758 Score: 1562
Period size: 393 Copynumber: 2.5 Consensus size: 387
76793 TGACCATTTA
* *
76803 CATTCTGGACA-AAACGTATCGACATAAATTCAA-AGAGTGTCGATACTTTATGCATACCTGTTT
1 CATTCTGGACACAAA-GTATCGACACAAATTCAACA-AGTGTCGATACTTTATGTATACCTGTTT
*
76866 TCTCATAAACCGGTGTATTTAGACCGGTTAGATTCATACTTTACCTATTACATTATAATTATGGG
64 TCTCATAAACCGGTGTATTTAGACCGGTTAGATTCATAATTTACCTATTACATTATAATTATGGG
*
76931 TCTCGATGGTTTTGGGATCGATACTTTTTATAAATGTATCGACACATTAT-AGTG-ACCTTGGTA
129 TCTCGATGTTTTTGGGATCGATACTTTTTATAAATGTATCGACACATT-TCA-TGCA-CTTGGTA
* *
76994 AGGAAATTATTCTGGACACAAAGTATTGACACAAATTAAACAAGTGTCGATACTTTATGTACACC
191 AGGAAATCATTCTGGACACAAAGTATCGACACAAATTAAACAAGTGTCGATACTTTATGTACACC
* *
77059 TATTTTCTCATAAACCGGCATATTTAGATCGGTTAGATTGATAATTTACCTATTACATTATAATT
256 TATTTTCTCATAAACCGGCATATTTAGACCGGTTAGATTCATAATTTACCTATTACATTATAATT
* *
77124 ATGGGTCTCGATGTTTTTGGGATCAATACTTTTTATAAATGTATTGACATTATGGTGACCTTGGT
321 ATGGGTCTCGATGTTTTTGGGATCAATACTTTTTATAAATGTATCGAC---AT-G-CA-CTTGGT
77189 AAGGAAAT
380 AAGGAAAT
* *
77197 CATTATGGACACAAAGTATCGACACAAATTCAACAAGTGTCGATACTTTATGTATACTTG-TTTC
1 CATTCTGGACACAAAGTATCGACACAAATTCAACAAGTGTCGATACTTTATGTATACCTGTTTTC
*
77261 TCATAAACCGGTGTATTTAGACCGGTTAGATTCATAATTTACCTATTAAATTATAATTATGGGTC
66 TCATAAACCGGTGTATTTAGACCGGTTAGATTCATAATTTACCTATTACATTATAATTATGGGTC
* *
77326 TCGATGTTTTTGGGATCTATACTTGTTATAAATGTATCGACACATTTCCATGCACTTGGTAAGGA
131 TCGATGTTTTTGGGATCGATACTTTTTATAAATGTATCGACACATTT-CATGCACTTGGTAAGGA
* * *
77391 AATCATTCTGGACACAAAGTATCGACACAAATTCAACAAGTGTTGATACTTTATGTACACCTGTT
195 AATCATTCTGGACACAAAGTATCGACACAAATTAAACAAGTGTCGATACTTTATGTACACCTATT
**
77456 TTCTCATAAACCGGTGTATTTAGACCGGTTAGATTCATAATTTACCTATTACATTATAATTATGG
260 TTCTCATAAACCGGCATATTTAGACCGGTTAGATTCATAATTTACCTATTACATTATAATTATGG
* *
77521 GTCTTGATGTTTTTGGGATCGATACTTTTTATAAATGTATCGACATGCACTTGGTAAGGAAAT
325 GTCTCGATGTTTTTGGGATCAATACTTTTTATAAATGTATCGACATGCACTTGGTAAGGAAAT
*
77584 CATTCTGGACACAAAGTATCGACACAAATTCAACAAGTGTCGATACTTTATGTACACCTGTTTTC
1 CATTCTGGACACAAAGTATCGACACAAATTCAACAAGTGTCGATACTTTATGTATACCTGTTTTC
77649 TCATAAACCGGTGTATTTAGACCGGTTAGATTCATAATTTACCTATTACATTATAATTATGGGTC
66 TCATAAACCGGTGTATTTAGACCGGTTAGATTCATAATTTACCTATTACATTATAATTATGGGTC
77714 TCGATGTTTTTGGGATCGATACTTTTTATAAATGTATCGACACAT
131 TCGATGTTTTTGGGATCGATACTTTTTATAAATGTATCGACACAT
77759 ATGTTTACCA
Statistics
Matches: 528, Mismatches: 28, Indels: 18
0.92 0.05 0.03
Matches are distributed among these distances:
387 71 0.13
388 112 0.21
389 1 0.00
390 2 0.00
392 1 0.00
393 285 0.54
394 52 0.10
395 4 0.01
ACGTcount: A:0.31, C:0.16, G:0.17, T:0.37
Consensus pattern (387 bp):
CATTCTGGACACAAAGTATCGACACAAATTCAACAAGTGTCGATACTTTATGTATACCTGTTTTC
TCATAAACCGGTGTATTTAGACCGGTTAGATTCATAATTTACCTATTACATTATAATTATGGGTC
TCGATGTTTTTGGGATCGATACTTTTTATAAATGTATCGACACATTTCATGCACTTGGTAAGGAA
ATCATTCTGGACACAAAGTATCGACACAAATTAAACAAGTGTCGATACTTTATGTACACCTATTT
TCTCATAAACCGGCATATTTAGACCGGTTAGATTCATAATTTACCTATTACATTATAATTATGGG
TCTCGATGTTTTTGGGATCAATACTTTTTATAAATGTATCGACATGCACTTGGTAAGGAAAT
Found at i:78137 original size:18 final size:19
Alignment explanation
Indices: 78090--78138 Score: 73
Period size: 19 Copynumber: 2.6 Consensus size: 19
78080 TTACATTCAC
*
78090 ATACAAAATTATAAATCGT
1 ATACAAAATTAAAAATCGT
*
78109 ATACAAAATTAAAAATCTT
1 ATACAAAATTAAAAATCGT
78128 ATAC-AAATTAA
1 ATACAAAATTAA
78139 CTGTAACAAC
Statistics
Matches: 28, Mismatches: 2, Indels: 1
0.90 0.06 0.03
Matches are distributed among these distances:
18 7 0.25
19 21 0.75
ACGTcount: A:0.57, C:0.10, G:0.02, T:0.31
Consensus pattern (19 bp):
ATACAAAATTAAAAATCGT
Found at i:78915 original size:13 final size:13
Alignment explanation
Indices: 78897--78964 Score: 60
Period size: 13 Copynumber: 5.5 Consensus size: 13
78887 GATCGGTCAC
78897 GACCCGACCCGTT
1 GACCCGACCCGTT
78910 GACCCGACCC---
1 GACCCGACCCGTT
78920 GACCCGTTAACCCG--
1 GACCCG---ACCCGTT
78934 G-CCCGA-CCGTT
1 GACCCGACCCGTT
78945 GACCCGACCCGTT
1 GACCCGACCCGTT
78958 GACCCGA
1 GACCCGA
78965 TCCGACCGTT
Statistics
Matches: 47, Mismatches: 0, Indels: 16
0.75 0.00 0.25
Matches are distributed among these distances:
9 3 0.06
10 7 0.15
11 1 0.02
12 5 0.11
13 30 0.64
14 1 0.02
ACGTcount: A:0.18, C:0.47, G:0.24, T:0.12
Consensus pattern (13 bp):
GACCCGACCCGTT
Found at i:78949 original size:30 final size:30
Alignment explanation
Indices: 78915--78978 Score: 101
Period size: 30 Copynumber: 2.1 Consensus size: 30
78905 CCGTTGACCC
*
78915 GACCCGACCCGTTAACCCGGCCCGACCGTT
1 GACCCGACCCGTTAACCCGACCCGACCGTT
* *
78945 GACCCGACCCGTTGACCCGATCCGACCGTT
1 GACCCGACCCGTTAACCCGACCCGACCGTT
78975 GACC
1 GACC
78979 GGTGCTATTT
Statistics
Matches: 31, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
30 31 1.00
ACGTcount: A:0.17, C:0.45, G:0.23, T:0.14
Consensus pattern (30 bp):
GACCCGACCCGTTAACCCGACCCGACCGTT
Found at i:78971 original size:18 final size:18
Alignment explanation
Indices: 78896--78955 Score: 95
Period size: 18 Copynumber: 3.4 Consensus size: 18
78886 TGATCGGTCA
78896 CGACCCGACCCGTTGACC
1 CGACCCGACCCGTTGACC
*
78914 CGACCCGACCCGTTAACC
1 CGACCCGACCCGTTGACC
*
78932 CGGCCCGA-CCGTTGACC
1 CGACCCGACCCGTTGACC
78949 CGACCCG
1 CGACCCG
78956 TTGACCCGAT
Statistics
Matches: 38, Mismatches: 4, Indels: 1
0.88 0.09 0.02
Matches are distributed among these distances:
17 14 0.37
18 24 0.63
ACGTcount: A:0.17, C:0.50, G:0.23, T:0.10
Consensus pattern (18 bp):
CGACCCGACCCGTTGACC
Found at i:79021 original size:29 final size:30
Alignment explanation
Indices: 78979--79054 Score: 100
Period size: 29 Copynumber: 2.5 Consensus size: 30
78969 ACCGTTGACC
*
78979 GGTGCTATTTTGGTAAACAATTCGG-TTTT
1 GGTGCTATTCTGGTAAACAATTCGGTTTTT
* *
79008 GGTGCTATTCTGGTAAATAATTTGGTTTTTT
1 GGTGCTATTCTGGTAAACAATTCGG-TTTTT
*
79039 TGTGCTATTCTGGTAA
1 GGTGCTATTCTGGTAA
79055 TTAATTCGAA
Statistics
Matches: 41, Mismatches: 4, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
29 22 0.54
31 19 0.46
ACGTcount: A:0.20, C:0.09, G:0.24, T:0.47
Consensus pattern (30 bp):
GGTGCTATTCTGGTAAACAATTCGGTTTTT
Found at i:79047 original size:31 final size:29
Alignment explanation
Indices: 78979--79062 Score: 105
Period size: 31 Copynumber: 2.8 Consensus size: 29
78969 ACCGTTGACC
* *
78979 GGTGCTATTTTGGTAAACAATTCGGTTTT
1 GGTGCTATTCTGGTAAATAATTCGGTTTT
*
79008 GGTGCTATTCTGGTAAATAATTTGGTTTTTT
1 GGTGCTATTCTGGTAAATAATTCGG--TTTT
* *
79039 TGTGCTATTCTGGTAATTAATTCG
1 GGTGCTATTCTGGTAAATAATTCG
79063 AAATGGGTTC
Statistics
Matches: 47, Mismatches: 6, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
29 22 0.47
31 25 0.53
ACGTcount: A:0.20, C:0.10, G:0.23, T:0.48
Consensus pattern (29 bp):
GGTGCTATTCTGGTAAATAATTCGGTTTT
Found at i:79112 original size:29 final size:29
Alignment explanation
Indices: 79040--79112 Score: 69
Period size: 29 Copynumber: 2.5 Consensus size: 29
79030 TGGTTTTTTT
* *
79040 GTGCTATTCTG-GTAATTAATTCGAAATGG
1 GTGCTATT-TGTGTAATTAATTCAAAAAGG
* * *
79069 GTTCTATTT-TCGTAATTATTTTAAAAAGG
1 GTGCTATTTGT-GTAATTAATTCAAAAAGG
79098 GTGCTATTTGTGTAA
1 GTGCTATTTGTGTAA
79113 AATGTTTAAC
Statistics
Matches: 35, Mismatches: 6, Indels: 6
0.74 0.13 0.13
Matches are distributed among these distances:
28 1 0.03
29 33 0.94
30 1 0.03
ACGTcount: A:0.27, C:0.08, G:0.21, T:0.44
Consensus pattern (29 bp):
GTGCTATTTGTGTAATTAATTCAAAAAGG
Found at i:86207 original size:23 final size:23
Alignment explanation
Indices: 86181--86255 Score: 98
Period size: 23 Copynumber: 3.2 Consensus size: 23
86171 TGACCGGTCA
86181 CGACCCGACCCGTTGACCCGACC
1 CGACCCGACCCGTTGACCCGACC
* *
86204 CGACCCGACCCGTTGACCCGGCA
1 CGACCCGACCCGTTGACCCGACC
*
86227 CGACCGTTGA-CCGTTGACCCGACC
1 CGACC--CGACCCGTTGACCCGACC
86251 CGACC
1 CGACC
86256 GTTGACCGTT
Statistics
Matches: 45, Mismatches: 5, Indels: 3
0.85 0.09 0.06
Matches are distributed among these distances:
23 26 0.58
24 17 0.38
25 2 0.04
ACGTcount: A:0.17, C:0.48, G:0.24, T:0.11
Consensus pattern (23 bp):
CGACCCGACCCGTTGACCCGACC
Found at i:86245 original size:24 final size:24
Alignment explanation
Indices: 86190--86269 Score: 101
Period size: 24 Copynumber: 3.4 Consensus size: 24
86180 ACGACCCGAC
* *
86190 CCGTTGACCCGACCCGACC--CGA
1 CCGTTGACCCGACACGACCGTTGA
*
86212 CCCGTTGACCCGGCACGACCGTTGA
1 -CCGTTGACCCGACACGACCGTTGA
*
86237 CCGTTGACCCGACCCGACCGTTGA
1 CCGTTGACCCGACACGACCGTTGA
86261 CCGTTGACC
1 CCGTTGACC
86270 GATGCTATTT
Statistics
Matches: 50, Mismatches: 5, Indels: 3
0.86 0.09 0.05
Matches are distributed among these distances:
23 17 0.34
24 31 0.62
25 2 0.04
ACGTcount: A:0.16, C:0.44, G:0.25, T:0.15
Consensus pattern (24 bp):
CCGTTGACCCGACACGACCGTTGA
Found at i:86345 original size:29 final size:29
Alignment explanation
Indices: 86274--86405 Score: 164
Period size: 29 Copynumber: 4.7 Consensus size: 29
86264 TTGACCGATG
* *
86274 CTATTTTGATAAATAATTCAGTTTTGTGT-
1 CTATTCTGGTAAATAATTCAGTTTTG-GTA
86303 -TATTCTGGTAAATAATTCAGTTTTGGTA
1 CTATTCTGGTAAATAATTCAGTTTTGGTA
* *
86331 CTATTCTGGTAAATAATTCAGTTTTAGTG
1 CTATTCTGGTAAATAATTCAGTTTTGGTA
*
86360 CTATTCTGGTAAATAATTC-GTTTT-TTA
1 CTATTCTGGTAAATAATTCAGTTTTGGTA
* *
86387 CTATTTTGGTAATTAATTC
1 CTATTCTGGTAAATAATTC
86406 GAAATGGGTG
Statistics
Matches: 93, Mismatches: 8, Indels: 6
0.87 0.07 0.06
Matches are distributed among these distances:
27 20 0.22
28 28 0.30
29 45 0.48
ACGTcount: A:0.27, C:0.09, G:0.14, T:0.49
Consensus pattern (29 bp):
CTATTCTGGTAAATAATTCAGTTTTGGTA
Found at i:86417 original size:56 final size:58
Alignment explanation
Indices: 86303--86420 Score: 143
Period size: 56 Copynumber: 2.1 Consensus size: 58
86293 AGTTTTGTGT
** *
86303 TATTCTGGTAAATAATTCAGTTTTGGTACTATTCTGGTAAATAATTCAGTTTTAGTGC
1 TATTCTGGTAAATAATTCAGTTTTGGTACTATTCTGGTAAATAATTCAGAATGAGTGC
* * * *
86361 TATTCTGGTAAATAATTC-GTTTT-TTACTATTTTGGTAATTAATTC-GAAATGGGTGC
1 TATTCTGGTAAATAATTCAGTTTTGGTACTATTCTGGTAAATAATTCAG-AATGAGTGC
86417 TATT
1 TATT
86421 TTTGTAATTA
Statistics
Matches: 52, Mismatches: 7, Indels: 4
0.83 0.11 0.06
Matches are distributed among these distances:
55 1 0.02
56 28 0.54
57 5 0.10
58 18 0.35
ACGTcount: A:0.27, C:0.09, G:0.17, T:0.47
Consensus pattern (58 bp):
TATTCTGGTAAATAATTCAGTTTTGGTACTATTCTGGTAAATAATTCAGAATGAGTGC
Found at i:86427 original size:29 final size:29
Alignment explanation
Indices: 86387--86456 Score: 79
Period size: 29 Copynumber: 2.4 Consensus size: 29
86377 TCGTTTTTTA
* **
86387 CTATTTTGGTAATTA-ATTCGAAATGGGTG
1 CTATTTTTGTAATTATATTAAAAAT-GGTG
*
86416 CTATTTTTGTAATTATTTTAAAAATGGTG
1 CTATTTTTGTAATTATATTAAAAATGGTG
*
86445 CTATTTGTGTAA
1 CTATTTTTGTAA
86457 AATGTTCAAC
Statistics
Matches: 35, Mismatches: 5, Indels: 2
0.83 0.12 0.05
Matches are distributed among these distances:
29 29 0.83
30 6 0.17
ACGTcount: A:0.29, C:0.06, G:0.19, T:0.47
Consensus pattern (29 bp):
CTATTTTTGTAATTATATTAAAAATGGTG
Found at i:89175 original size:17 final size:17
Alignment explanation
Indices: 89153--89188 Score: 72
Period size: 17 Copynumber: 2.1 Consensus size: 17
89143 GAATCATTAG
89153 GATTAATATCTTTTCAT
1 GATTAATATCTTTTCAT
89170 GATTAATATCTTTTCAT
1 GATTAATATCTTTTCAT
89187 GA
1 GA
89189 AATATTTAAA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 19 1.00
ACGTcount: A:0.31, C:0.11, G:0.08, T:0.50
Consensus pattern (17 bp):
GATTAATATCTTTTCAT
Found at i:92534 original size:181 final size:179
Alignment explanation
Indices: 92070--92669 Score: 728
Period size: 182 Copynumber: 3.3 Consensus size: 179
92060 TACGCGTACT
* * * * * *
92070 TATTAAAGTACCGACACATTCAACATAACCGGTAGCGCTTTACCGGTTTTGTCATTTCGAT-ATC
1 TATTAAAGTATCGACACTTTCAATATATCCGGTAGCTCTTTACCGGTTTTATCATTTCG-TGATC
* *
92134 GGTTTTG-ACATATTTTTACCTATTATATTGTTATGGATCGATACATTTTCATAAAGTATCGACA
65 -GTTTTGTA-ATA-TTATACCTGTTATATTGTTATGGATCGATACATTTT-ATAAAGTATCGACA
* * *
92198 CTTTTTAGGCGCTATAACTTCTTCTCTTTTAAATT-ACGAAATTGTCGATACTTA
126 CTTTATAGGCGCTATAACTTCTTCTCTTTTAAATTCA-AAAAGTGTCGATACTTA
** * * * * *
92252 TATTAATTTATCGACACTTTCAATATATCCGATAGCTTTTTACAGGTTTTATCATTTCGAGACCT
1 TATTAAAGTATCGACACTTTCAATATATCCGGTAGCTCTTTACCGGTTTTATCATTTCGTGATC-
* *
92317 GTTTTGTCATATTATTACCTGTTATATTGCTATGGATCGATACATTTGTATAAAGTATCGACACT
65 GTTTTGTAATATTA-TACCTGTTATATTGTTATGGATCGATACATTT-TATAAAGTATCGACACT
*
92382 TTATAGGCGCTATAACTTATTCTCTTTTAAATTCAAAAAGTGTCGA-ACTTA
128 TTATAGGCGCTATAACTTCTTCTCTTTTAAATTCAAAAAGTGTCGATACTTA
*
92433 TATTAACGTATCGACACTTTCAATATATCCGGTAGCTCTTTACCGGTTTTATCATTTCGTGATCG
1 TATTAAAGTATCGACACTTTCAATATATCCGGTAGCTCTTTACCGGTTTTATCATTTCGTGATCG
* *
92498 ATTTTGTAATACTTATACCTGTTATATTGTTATGGATCGA-ACGTTTTTATAAAGTATCAACACT
66 -TTTTGTAATA-TTATACCTGTTATATTGTTATGGATCGATAC-ATTTTATAAAGTATCGACACT
* * *
92562 TTATAGGCACTATTACTTCTTCTCTTTTAAATTCCAAAAGTGTCGATACTTA
128 TTATAGGCGCTATAACTTCTTCTCTTTTAAATTCAAAAAGTGTCGATACTTA
* * * * *
92614 T-TTAAAGCTAATCGATACTTTCGATATATCCAGTAG-TGGTTTACCAGTTTTATCAT
1 TATTAAAG-T-ATCGACACTTTCAATATATCCGGTAGCT-CTTTACCGGTTTTATCAT
92670 AATGAAACCG
Statistics
Matches: 363, Mismatches: 43, Indels: 24
0.84 0.10 0.06
Matches are distributed among these distances:
180 66 0.18
181 108 0.30
182 187 0.52
183 2 0.01
ACGTcount: A:0.28, C:0.17, G:0.13, T:0.41
Consensus pattern (179 bp):
TATTAAAGTATCGACACTTTCAATATATCCGGTAGCTCTTTACCGGTTTTATCATTTCGTGATCG
TTTTGTAATATTATACCTGTTATATTGTTATGGATCGATACATTTTATAAAGTATCGACACTTTA
TAGGCGCTATAACTTCTTCTCTTTTAAATTCAAAAAGTGTCGATACTTA
Found at i:94136 original size:18 final size:18
Alignment explanation
Indices: 94113--94147 Score: 70
Period size: 18 Copynumber: 1.9 Consensus size: 18
94103 ATGTCCCCAG
94113 AGTCATAGATATAACATA
1 AGTCATAGATATAACATA
94131 AGTCATAGATATAACAT
1 AGTCATAGATATAACAT
94148 GACTTTTAAA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.49, C:0.11, G:0.11, T:0.29
Consensus pattern (18 bp):
AGTCATAGATATAACATA
Found at i:95180 original size:22 final size:22
Alignment explanation
Indices: 95154--95206 Score: 97
Period size: 22 Copynumber: 2.4 Consensus size: 22
95144 CGTAAAATCA
*
95154 ATTTCATAAAGTTTATGAAAAT
1 ATTTCAAAAAGTTTATGAAAAT
95176 ATTTCAAAAAGTTTATGAAAAT
1 ATTTCAAAAAGTTTATGAAAAT
95198 ATTTCAAAA
1 ATTTCAAAA
95207 TGCGTTAAAT
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
22 30 1.00
ACGTcount: A:0.49, C:0.06, G:0.08, T:0.38
Consensus pattern (22 bp):
ATTTCAAAAAGTTTATGAAAAT
Found at i:96929 original size:21 final size:21
Alignment explanation
Indices: 96890--97316 Score: 357
Period size: 21 Copynumber: 20.4 Consensus size: 21
96880 GTCCAAGTTC
* *
96890 ATAGTCGAAGTTTGCGTTGCG
1 ATAGTCCAAGTTCGCGTTGCG
** *
96911 ATTTTCCAAATTCGCGTTGCG
1 ATAGTCCAAGTTCGCGTTGCG
* *
96932 ATTTATTCCAAATT--CGTTGCG
1 A--TAGTCCAAGTTCGCGTTGCG
96953 ATAGTCCAAGTTCGCGTTGCG
1 ATAGTCCAAGTTCGCGTTGCG
* *
96974 ATTTATTCCAAATT--CGTTGCG
1 A--TAGTCCAAGTTCGCGTTGCG
*
96995 ATAGTCCAAGTTCACGTTGCG
1 ATAGTCCAAGTTCGCGTTGCG
97016 ATAGTCCAAGTT--CGTTGCG
1 ATAGTCCAAGTTCGCGTTGCG
97035 ATAGTCCAAGTTCGCGTTGCG
1 ATAGTCCAAGTTCGCGTTGCG
* *
97056 ATTTATTCCAAATT--CGTTGCG
1 A--TAGTCCAAGTTCGCGTTGCG
97077 ATAGTCCAAGTTCGCGTTGCG
1 ATAGTCCAAGTTCGCGTTGCG
* * *
97098 ATAGTCGAAGTTCGCGTTACC
1 ATAGTCCAAGTTCGCGTTGCG
97119 ATAGTCCAAGTTCGCGTTGCG
1 ATAGTCCAAGTTCGCGTTGCG
97140 ATAGT-CAGAGTTCGCGTTGCG
1 ATAGTCCA-AGTTCGCGTTGCG
*
97161 ATTTATTCCAAGTT--CGTTGCG
1 A--TAGTCCAAGTTCGCGTTGCG
*
97182 ATAGTCAAAGTTCGCGTTGCG
1 ATAGTCCAAGTTCGCGTTGCG
* * *
97203 ATTTATTCCAAG-T-ACATTGCG
1 A--TAGTCCAAGTTCGCGTTGCG
**
97224 ATAGTATAAGTTCGCGTTGCG
1 ATAGTCCAAGTTCGCGTTGCG
* *
97245 ATTTATTCCAAGTT--CATTGCG
1 A--TAGTCCAAGTTCGCGTTGCG
*
97266 ATAGTCGAAGTTCGCGTTGCG
1 ATAGTCCAAGTTCGCGTTGCG
* *
97287 ATTTATTCCAAATT--CGTTGCG
1 A--TAGTCCAAGTTCGCGTTGCG
97308 ATAGTCCAA
1 ATAGTCCAA
97317 AATCGCAACG
Statistics
Matches: 331, Mismatches: 45, Indels: 62
0.76 0.10 0.14
Matches are distributed among these distances:
19 77 0.23
20 3 0.01
21 190 0.57
22 1 0.00
23 58 0.18
24 2 0.01
ACGTcount: A:0.22, C:0.20, G:0.23, T:0.34
Consensus pattern (21 bp):
ATAGTCCAAGTTCGCGTTGCG
Found at i:98085 original size:6 final size:6
Alignment explanation
Indices: 98074--98104 Score: 62
Period size: 6 Copynumber: 5.2 Consensus size: 6
98064 CTCGTTTGGC
98074 TCGTGG TCGTGG TCGTGG TCGTGG TCGTGG T
1 TCGTGG TCGTGG TCGTGG TCGTGG TCGTGG T
98105 AATACGTGTC
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 25 1.00
ACGTcount: A:0.00, C:0.16, G:0.48, T:0.35
Consensus pattern (6 bp):
TCGTGG
Found at i:98217 original size:19 final size:19
Alignment explanation
Indices: 98193--98257 Score: 76
Period size: 19 Copynumber: 3.2 Consensus size: 19
98183 TCGTTGCGAT
98193 TTTGGACTATCGCAACGAA
1 TTTGGACTATCGCAACGAA
*
98212 TTTGGAATAAATCGCAACGCGAA
1 TTTGGACT--ATCGCAA--CGAA
*
98235 CTTGGACTATCGCAACGAA
1 TTTGGACTATCGCAACGAA
98254 TTTG
1 TTTG
98258 TAATAAATCA
Statistics
Matches: 38, Mismatches: 4, Indels: 8
0.76 0.08 0.16
Matches are distributed among these distances:
19 14 0.37
21 14 0.37
23 10 0.26
ACGTcount: A:0.32, C:0.20, G:0.22, T:0.26
Consensus pattern (19 bp):
TTTGGACTATCGCAACGAA
Found at i:98227 original size:21 final size:21
Alignment explanation
Indices: 98201--98272 Score: 76
Period size: 21 Copynumber: 3.4 Consensus size: 21
98191 ATTTTGGACT
98201 ATCGCAACGAATTTGGAATAA
1 ATCGCAACGAATTTGGAATAA
* *
98222 ATCGCAACGCGAACTTGGACT--
1 ATCGCAA--CGAATTTGGAATAA
*
98243 ATCGCAACGAATTTGTAATAA
1 ATCGCAACGAATTTGGAATAA
*
98264 ATCACAACG
1 ATCGCAACG
98273 CGAACTTGGA
Statistics
Matches: 41, Mismatches: 6, Indels: 8
0.75 0.11 0.15
Matches are distributed among these distances:
19 9 0.22
21 22 0.54
23 10 0.24
ACGTcount: A:0.39, C:0.21, G:0.18, T:0.22
Consensus pattern (21 bp):
ATCGCAACGAATTTGGAATAA
Found at i:98239 original size:23 final size:21
Alignment explanation
Indices: 98201--98282 Score: 69
Period size: 21 Copynumber: 3.8 Consensus size: 21
98191 ATTTTGGACT
*
98201 ATCGCAACGAATTTGGAATAA
1 ATCGCAACGAACTTGGAATAA
*
98222 ATCGCAACGCGAACTTGGACT--
1 ATCGCAA--CGAACTTGGAATAA
* *
98243 ATCGCAACGAATTTGTAATAA
1 ATCGCAACGAACTTGGAATAA
*
98264 ATCACAACGCGAACTTGGA
1 ATCGCAA--CGAACTTGGA
98283 CTATCGCACG
Statistics
Matches: 47, Mismatches: 8, Indels: 10
0.72 0.12 0.15
Matches are distributed among these distances:
19 9 0.19
21 20 0.43
23 18 0.38
ACGTcount: A:0.38, C:0.21, G:0.20, T:0.22
Consensus pattern (21 bp):
ATCGCAACGAACTTGGAATAA
Found at i:98253 original size:42 final size:42
Alignment explanation
Indices: 98194--98332 Score: 176
Period size: 42 Copynumber: 3.3 Consensus size: 42
98184 CGTTGCGATT
98194 TTGGACTATCGCAACGAATTTGGAATAAATCGCAACGCGAAC
1 TTGGACTATCGCAACGAATTTGGAATAAATCGCAACGCGAAC
* *
98236 TTGGACTATCGCAACGAATTTGTAATAAATCACAACGCGAAC
1 TTGGACTATCGCAACGAATTTGGAATAAATCGCAACGCGAAC
* * * *
98278 TTGGACTATCGC-ACGTGAACTTCGACT--ATCGTAACGCGAAC
1 TTGGACTATCGCAAC--GAATTTGGAATAAATCGCAACGCGAAC
*
98319 TTCGACTATCGCAA
1 TTGGACTATCGCAA
98333 TGCGAATCGC
Statistics
Matches: 85, Mismatches: 9, Indels: 6
0.85 0.09 0.06
Matches are distributed among these distances:
41 25 0.29
42 53 0.62
43 7 0.08
ACGTcount: A:0.33, C:0.24, G:0.19, T:0.24
Consensus pattern (42 bp):
TTGGACTATCGCAACGAATTTGGAATAAATCGCAACGCGAAC
Found at i:98299 original size:20 final size:20
Alignment explanation
Indices: 98270--98385 Score: 95
Period size: 21 Copynumber: 6.0 Consensus size: 20
98260 ATAAATCACA
*
98270 ACGCGAACTTGGACTATCGC
1 ACGCGAACTTCGACTATCGC
* *
98290 ACGTGAACTTCGACTATCGTA
1 ACGCGAACTTCGACTATCG-C
98311 ACGCGAACTTCGACTAT---
1 ACGCGAACTTCGACTATCGC
*
98328 -CGC-AA-TGCGA--ATCGC
1 ACGCGAACTTCGACTATCGC
98343 AACGCGAACTTCGACTATCGC
1 -ACGCGAACTTCGACTATCGC
* *
98364 AACGCAAACTTGGACTATCGC
1 -ACGCGAACTTCGACTATCGC
98385 A
1 A
98386 ATGCGAATAT
Statistics
Matches: 78, Mismatches: 8, Indels: 20
0.74 0.08 0.19
Matches are distributed among these distances:
12 2 0.03
14 4 0.05
15 2 0.03
16 3 0.04
17 3 0.04
18 2 0.03
19 4 0.05
20 18 0.23
21 40 0.51
ACGTcount: A:0.29, C:0.29, G:0.21, T:0.21
Consensus pattern (20 bp):
ACGCGAACTTCGACTATCGC
Found at i:98368 original size:54 final size:53
Alignment explanation
Indices: 98285--98393 Score: 173
Period size: 54 Copynumber: 2.0 Consensus size: 53
98275 AACTTGGACT
* * *
98285 ATCGCACGTGAACTTCGACTATCGTAACGCGAACTTCGACTATCGCAATGCGA
1 ATCGCACGCGAACTTCGACTATCGCAACGCAAACTTCGACTATCGCAATGCGA
*
98338 ATCGCAACGCGAACTTCGACTATCGCAACGCAAACTTGGACTATCGCAATGCGA
1 ATCGC-ACGCGAACTTCGACTATCGCAACGCAAACTTCGACTATCGCAATGCGA
98392 AT
1 AT
98394 ATGTAAATCG
Statistics
Matches: 51, Mismatches: 4, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
53 5 0.10
54 46 0.90
ACGTcount: A:0.30, C:0.28, G:0.20, T:0.21
Consensus pattern (53 bp):
ATCGCACGCGAACTTCGACTATCGCAACGCAAACTTCGACTATCGCAATGCGA
Found at i:103550 original size:176 final size:176
Alignment explanation
Indices: 103256--103607 Score: 650
Period size: 176 Copynumber: 2.0 Consensus size: 176
103246 AGTTGAATGA
* *
103256 CTTCCCCTGGAACTTGATGGAATGCTAACAGGAGGTGGTTTAGCCATTAATGATGTGAAATCATT
1 CTTCCCCTGGAACTTGATGGAATGCTAACAGGAGGTGGTTTAGCCATTAATAACGTGAAATCATT
103321 ATATATTATTTAAGTTAGACTATCAACTTGATCAATAGGTTCAGACAATCCATAGTGGGATGAGA
66 ATATATTATTTAAGTTAGACTATCAACTTGATCAATAGGTTCAGACAATCCATAGTGGGATGAGA
* *
103386 AGGGCATACCCAAAACTGCATGTGTGTCAATAAAAGTGGAATACAT
131 AGGGCATACCCAAAACTGCATGTGCGTCAACAAAAGTGGAATACAT
*
103432 CTTCCCCTGTAACTTGATGGAATGCTAACAGGAGGTGGTTTAGCCATTAATAACGTGAAATCATT
1 CTTCCCCTGGAACTTGATGGAATGCTAACAGGAGGTGGTTTAGCCATTAATAACGTGAAATCATT
*
103497 ATATATTATTTAAGTTAGACTATCAACTTGATCAATAGGTTCAGACAATCCATATTGGGATGAGA
66 ATATATTATTTAAGTTAGACTATCAACTTGATCAATAGGTTCAGACAATCCATAGTGGGATGAGA
103562 AGGGCATACCCAAAACTGCATGTGCGTCAACAAAAGTGGAATACAT
131 AGGGCATACCCAAAACTGCATGTGCGTCAACAAAAGTGGAATACAT
103608 TTCTATAATA
Statistics
Matches: 170, Mismatches: 6, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
176 170 1.00
ACGTcount: A:0.34, C:0.16, G:0.21, T:0.29
Consensus pattern (176 bp):
CTTCCCCTGGAACTTGATGGAATGCTAACAGGAGGTGGTTTAGCCATTAATAACGTGAAATCATT
ATATATTATTTAAGTTAGACTATCAACTTGATCAATAGGTTCAGACAATCCATAGTGGGATGAGA
AGGGCATACCCAAAACTGCATGTGCGTCAACAAAAGTGGAATACAT
Found at i:104187 original size:83 final size:81
Alignment explanation
Indices: 104048--104436 Score: 460
Period size: 83 Copynumber: 4.7 Consensus size: 81
104038 GTGAAGTGGA
* *
104048 AGAGATTCTCTGAATAATAATGGAAAACGCCTTCCCCGAAACACGCCTTTCATTTC-AGATGGGA
1 AGAGATTCTCTGAATAATAATGGAAAACGCTTTCCCCG-AA-ATGCCTTTCATTTCGA-ATGGGA
* *
104112 TGAAACACTCTAACATGGT
63 TGGAACACTCTAACATGGC
* * * *
104131 AGAGATTCTATGAATAATAATGGAAAACACTTTCCCTGAAATGCTTCTTTCATTTC-AGATGGTA
1 AGAGATTCTCTGAATAATAATGGAAAACGCTTTCCCCGAAATGC--CTTTCATTTCGA-ATGGGA
*
104195 TGGAACACTCTGACATGGC
63 TGGAACACTCTAACATGGC
* * *
104214 AGAGATTCTCTTAATAATAATGAAAAACGTTTTCCCCGAAACGTGCCTTTCATTTCGAATGGGAT
1 AGAGATTCTCTGAATAATAATGGAAAACGCTTTCCCCGAAA--TGCCTTTCATTTCGAATGGGAT
104279 GGAACACTCTAACATGGC
64 GGAACACTCTAACATGGC
* *
104297 AGAGATTCTCTGAATAATAATGGAAAACGCTTTCCCCAAAACATGCCTTTCATTTCGAATAGGAT
1 AGAGATTCTCTGAATAATAATGGAAAACGCTTTCCCC-GAA-ATGCCTTTCATTTCGAATGGGAT
* * *
104362 GCAACACTTTGACATGGC
64 GGAACACTCTAACATGGC
* * *
104380 ACAGATTCTCTGAATAATAATAGAAAACGC-TTCCCTCGAAAAGCGTCTTTCATTTCG
1 AGAGATTCTCTGAATAATAATGGAAAACGCTTTCCC-CGAAATGC--CTTTCATTTCG
104437 GATAGAATGG
Statistics
Matches: 267, Mismatches: 29, Indels: 20
0.84 0.09 0.06
Matches are distributed among these distances:
81 6 0.02
82 9 0.03
83 245 0.92
84 3 0.01
85 4 0.01
ACGTcount: A:0.33, C:0.21, G:0.17, T:0.29
Consensus pattern (81 bp):
AGAGATTCTCTGAATAATAATGGAAAACGCTTTCCCCGAAATGCCTTTCATTTCGAATGGGATGG
AACACTCTAACATGGC
Found at i:104322 original size:166 final size:166
Alignment explanation
Indices: 104048--104436 Score: 513
Period size: 166 Copynumber: 2.3 Consensus size: 166
104038 GTGAAGTGGA
* *
104048 AGAGATTCTCTGAATAATAATGGAAAACGCCTTCCCCGAAACACGCCTTTCATTTC-AGATGGGA
1 AGAGATTCTCTGAATAATAATGAAAAACG-CTTCCCCGAAACGCGCCTTTCATTTCGAGATGGGA
* **
104112 TGAAACACTCTAACATGGTAGAGATTCTATGAATAATAATGGAAAACACTTT-CCCTGAA-ATGC
65 TGAAACACTCTAACATGGCAGAGATTCTATGAATAATAATGGAAAACACTTTCCCCAAAACATGC
*
104175 TTCTTTCATTTC-AGAT-GGTATGGAACACTCTGACATGGC
130 --CTTTCATTTCGA-ATAGG-ATGCAACACTCTGACATGGC
* * *
104214 AGAGATTCTCTTAATAATAATGAAAAACGTTTTCCCCGAAACGTGCCTTTCATTTCGA-ATGGGA
1 AGAGATTCTCTGAATAATAATGAAAAACG-CTTCCCCGAAACGCGCCTTTCATTTCGAGATGGGA
* * *
104278 TGGAACACTCTAACATGGCAGAGATTCTCTGAATAATAATGGAAAACGCTTTCCCCAAAACATGC
65 TGAAACACTCTAACATGGCAGAGATTCTATGAATAATAATGGAAAACACTTTCCCCAAAACATGC
*
104343 CTTTCATTTCGAATAGGATGCAACACTTTGACATGGC
130 CTTTCATTTCGAATAGGATGCAACACTCTGACATGGC
* * *
104380 ACAGATTCTCTGAATAATAAT-AGAAAACGCTTCCCTCGAAAAGCGTCTTTCATTTCG
1 AGAGATTCTCTGAATAATAATGA-AAAACGCTTCCC-CGAAACGCGCCTTTCATTTCG
104437 GATAGAATGG
Statistics
Matches: 196, Mismatches: 20, Indels: 14
0.85 0.09 0.06
Matches are distributed among these distances:
165 6 0.03
166 177 0.90
167 9 0.05
168 4 0.02
ACGTcount: A:0.33, C:0.21, G:0.17, T:0.29
Consensus pattern (166 bp):
AGAGATTCTCTGAATAATAATGAAAAACGCTTCCCCGAAACGCGCCTTTCATTTCGAGATGGGAT
GAAACACTCTAACATGGCAGAGATTCTATGAATAATAATGGAAAACACTTTCCCCAAAACATGCC
TTTCATTTCGAATAGGATGCAACACTCTGACATGGC
Found at i:105252 original size:19 final size:21
Alignment explanation
Indices: 105219--105260 Score: 70
Period size: 19 Copynumber: 2.1 Consensus size: 21
105209 GGCTGAAAAT
105219 ACTGTAGCAATGTATCGATAC
1 ACTGTAGCAATGTATCGATAC
105240 ACTGTAGC-A-GTATCGATAC
1 ACTGTAGCAATGTATCGATAC
105259 AC
1 AC
105261 AATTTTACAT
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
19 12 0.57
20 1 0.05
21 8 0.38
ACGTcount: A:0.33, C:0.21, G:0.19, T:0.26
Consensus pattern (21 bp):
ACTGTAGCAATGTATCGATAC
Found at i:106491 original size:26 final size:27
Alignment explanation
Indices: 106456--106510 Score: 76
Period size: 26 Copynumber: 2.1 Consensus size: 27
106446 TGGACTATAA
*
106456 AAACAACAAACCATGAA-CATTACATT
1 AAACAACAAACCATGAATCATGACATT
* *
106482 AAACAACAAACTATTAATCATGACATT
1 AAACAACAAACCATGAATCATGACATT
106509 AA
1 AA
106511 GAATATCAAA
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
26 15 0.60
27 10 0.40
ACGTcount: A:0.55, C:0.20, G:0.04, T:0.22
Consensus pattern (27 bp):
AAACAACAAACCATGAATCATGACATT
Found at i:106581 original size:32 final size:33
Alignment explanation
Indices: 106534--106597 Score: 103
Period size: 32 Copynumber: 1.9 Consensus size: 33
106524 ACAAGTTAAA
106534 AATACACGTCTTAAACAGTAAATAAAAGCATAGT
1 AATACACG-CTTAAACAGTAAATAAAAGCATAGT
*
106568 AATACAC-CTTAAACAGTAAATATAAGCATA
1 AATACACGCTTAAACAGTAAATAAAAGCATA
106598 CACACGCATC
Statistics
Matches: 29, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
32 22 0.76
34 7 0.24
ACGTcount: A:0.52, C:0.16, G:0.09, T:0.23
Consensus pattern (33 bp):
AATACACGCTTAAACAGTAAATAAAAGCATAGT
Found at i:107494 original size:15 final size:15
Alignment explanation
Indices: 107476--107518 Score: 59
Period size: 15 Copynumber: 2.9 Consensus size: 15
107466 ACTGTCTTCC
107476 TCATCATCATCATTG
1 TCATCATCATCATTG
* *
107491 TCATCATCCTCGTTG
1 TCATCATCATCATTG
*
107506 TCTTCATCATCAT
1 TCATCATCATCAT
107519 CTTCGGTCTC
Statistics
Matches: 23, Mismatches: 5, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
15 23 1.00
ACGTcount: A:0.21, C:0.30, G:0.07, T:0.42
Consensus pattern (15 bp):
TCATCATCATCATTG
Found at i:110356 original size:2 final size:2
Alignment explanation
Indices: 110349--110388 Score: 80
Period size: 2 Copynumber: 20.0 Consensus size: 2
110339 AAAGCTTTCG
110349 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC
1 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC
110389 ATCTTTCTCA
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 38 1.00
ACGTcount: A:0.00, C:0.50, G:0.00, T:0.50
Consensus pattern (2 bp):
TC
Found at i:113877 original size:15 final size:15
Alignment explanation
Indices: 113853--113892 Score: 53
Period size: 15 Copynumber: 2.7 Consensus size: 15
113843 TACAAAAGCT
* *
113853 GAAGATGATGACCAC
1 GAAGAAGATGACAAC
*
113868 GAAGAAGATGGCAAC
1 GAAGAAGATGACAAC
113883 GAAGAAGATG
1 GAAGAAGATG
113893 GCCAACCCTT
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
15 22 1.00
ACGTcount: A:0.45, C:0.12, G:0.33, T:0.10
Consensus pattern (15 bp):
GAAGAAGATGACAAC
Found at i:113893 original size:15 final size:15
Alignment explanation
Indices: 113866--113894 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
113856 GATGATGACC
113866 ACGAAGAAGATGGCA
1 ACGAAGAAGATGGCA
113881 ACGAAGAAGATGGC
1 ACGAAGAAGATGGC
113895 CAACCCTTCT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.45, C:0.14, G:0.34, T:0.07
Consensus pattern (15 bp):
ACGAAGAAGATGGCA
Found at i:115849 original size:33 final size:33
Alignment explanation
Indices: 115807--115879 Score: 119
Period size: 33 Copynumber: 2.2 Consensus size: 33
115797 CTCTGAATAA
*
115807 CAAGTTACATTCAACCCATTTTGTGTCAGTAAT
1 CAAGTTACATTCAACACATTTTGTGTCAGTAAT
*
115840 CAAGTTACATTCAACACATTTTGTGTCATTAAT
1 CAAGTTACATTCAACACATTTTGTGTCAGTAAT
*
115873 CTAGTTA
1 CAAGTTA
115880 TTCTTTCTTT
Statistics
Matches: 37, Mismatches: 3, Indels: 0
0.93 0.08 0.00
Matches are distributed among these distances:
33 37 1.00
ACGTcount: A:0.32, C:0.19, G:0.11, T:0.38
Consensus pattern (33 bp):
CAAGTTACATTCAACACATTTTGTGTCAGTAAT
Found at i:116367 original size:15 final size:15
Alignment explanation
Indices: 116349--116415 Score: 50
Period size: 18 Copynumber: 4.4 Consensus size: 15
116339 ATATATTTAT
116349 TAATATTATAATAAA
1 TAATATTATAATAAA
**
116364 TAATATTAT--T-TT
1 TAATATTATAATAAA
116376 TAATATTATAATAAAA
1 TAATATTATAAT-AAA
*
116392 TAATCAATTATATTATAA
1 TAAT--ATTATAATA-AA
116410 TAATAT
1 TAATAT
116416 AATAGGATAT
Statistics
Matches: 40, Mismatches: 5, Indels: 13
0.69 0.09 0.22
Matches are distributed among these distances:
12 9 0.22
13 1 0.03
14 1 0.03
15 9 0.22
16 6 0.15
17 1 0.03
18 13 0.32
ACGTcount: A:0.52, C:0.01, G:0.00, T:0.46
Consensus pattern (15 bp):
TAATATTATAATAAA
Found at i:116419 original size:58 final size:57
Alignment explanation
Indices: 116335--116457 Score: 135
Period size: 58 Copynumber: 2.1 Consensus size: 57
116325 TTAAAATGTT
* *
116335 TAAAATATATTTATTAATATTATAATA-AATAATATTATTTTTAATATTATAATAAAATAA
1 TAAATTATATTTATTAATAATATAATAGAATAATA-TATTTTT-AT-TT-TAATAAAATAA
* * * *
116395 TCAATTATA-TTA-TAATAATATAATAGGATATTATATTTTTATTTTAATAATATAA
1 TAAATTATATTTATTAATAATATAATAGAATAATATATTTTTATTTTAATAAAATAA
116450 TAAATTAT
1 TAAATTAT
116458 TAATAAAATT
Statistics
Matches: 55, Mismatches: 7, Indels: 7
0.80 0.10 0.10
Matches are distributed among these distances:
55 17 0.31
56 2 0.04
57 2 0.04
58 19 0.35
59 8 0.15
60 7 0.13
ACGTcount: A:0.50, C:0.01, G:0.02, T:0.48
Consensus pattern (57 bp):
TAAATTATATTTATTAATAATATAATAGAATAATATATTTTTATTTTAATAAAATAA
Found at i:116584 original size:23 final size:23
Alignment explanation
Indices: 116558--116602 Score: 63
Period size: 23 Copynumber: 2.0 Consensus size: 23
116548 CTAAATATTT
116558 TAATAAAGATATTTAAAATATAC
1 TAATAAAGATATTTAAAATATAC
* * *
116581 TAATTAATATTTTTAAAATATA
1 TAATAAAGATATTTAAAATATA
116603 ATATAACACT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
23 19 1.00
ACGTcount: A:0.53, C:0.02, G:0.02, T:0.42
Consensus pattern (23 bp):
TAATAAAGATATTTAAAATATAC
Found at i:116872 original size:14 final size:13
Alignment explanation
Indices: 116853--116887 Score: 52
Period size: 14 Copynumber: 2.5 Consensus size: 13
116843 CAAATATCAT
116853 AAAATGTTTTCCAG
1 AAAATGTTTT-CAG
116867 AAAATGATTTTCAG
1 AAAATG-TTTTCAG
116881 AAAATGT
1 AAAATGT
116888 AATTCATTTT
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
13 1 0.05
14 15 0.75
15 4 0.20
ACGTcount: A:0.43, C:0.09, G:0.14, T:0.34
Consensus pattern (13 bp):
AAAATGTTTTCAG
Done.