Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003299.1 Hibiscus syriacus cultivar Beakdansim tig00006939_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  55428

Tables:   1   

This is table  1  of  1  ( 20 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
284--757
100
4.7
100
79
8
466
36
10
12
40
1.78
284--649
198
1.9
193
83
5
475
35
10
13
39
1.80
557--763
109
1.9
107
83
5
265
36
9
10
42
1.72
16759--16818
18
3.3
18
88
4
86
35
8
33
23
1.85
17136--17178
21
2.0
21
86
0
59
34
9
23
32
1.87
17295--18277
436
2.2
439
89
2
1492
36
14
12
36
1.85
18957--19459
231
2.2
230
83
3
625
32
13
13
39
1.84
19812--20299
142
3.4
141
82
6
541
37
12
13
36
1.83
19812--20333
145
3.6
144
82
4
606
37
12
13
36
1.83
25984--26104
59
2.1
58
84
9
156
34
19
17
28
1.95
36204--36243
19
2.1
19
100
0
80
40
0
17
42
1.49
37876--37916
21
1.9
22
85
5
57
41
7
12
39
1.70
39570--39625
28
2.3
23
75
24
60
8
28
35
26
1.87
51744--51791
20
2.4
20
82
6
53
35
14
10
39
1.80
52207--52262
15
3.8
14
76
19
60
48
0
0
51
1.00
52205--52257
28
1.9
27
84
3
70
47
0
0
52
1.00
52531--52570
12
3.5
11
83
10
53
40
0
0
60
0.97
53356--53401
15
2.8
17
74
12
51
63
0
0
36
0.95
53817--53843
4
6.8
4
100
0
54
22
0
0
77
0.76
54349--54398
25
2.0
25
84
7
66
30
6
4
60
1.39

Tables:   1

The End!