Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000033.1 Hibiscus syriacus cultivar Beakdansim tig00000054_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  78353

Tables:   1   

This is table  1  of  1  ( 21 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
5527--5568
13
3.5
13
78
18
54
50
0
4
45
1.23
5519--5576
22
2.6
23
86
5
75
55
0
5
39
1.22
5532--5580
23
2.1
23
88
7
73
51
0
6
42
1.27
6068--6127
31
1.9
31
82
0
75
31
8
16
43
1.78
17810--17849
21
1.9
21
89
0
62
25
40
25
10
1.86
29824--29968
76
1.9
76
95
0
263
31
10
12
45
1.75
33576--34265
342
2.0
342
99
0
1353
28
14
15
41
1.86
38312--38343
15
2.1
15
94
0
55
34
12
12
40
1.81
40112--40195
4
22.5
4
68
13
54
50
0
0
50
1.00
40112--40195
6
15.0
6
75
14
54
50
0
0
50
1.00
40112--40195
42
2.0
42
95
0
150
50
0
0
50
1.00
60051--60114
27
2.4
27
89
0
101
28
18
15
37
1.92
60181--60241
22
2.8
22
92
0
95
39
21
9
29
1.85
61081--61131
19
2.6
20
90
3
77
15
17
23
43
1.88
67420--67463
23
1.9
23
95
0
79
20
18
22
38
1.93
68854--68881
9
3.1
9
100
0
56
21
21
32
25
1.98
68915--68975
25
2.4
25
83
2
86
36
19
14
29
1.92
77416--77517
48
2.1
48
96
3
188
14
15
2
66
1.37
77416--77489
24
3.1
24
67
21
73
13
14
2
68
1.31
77423--77500
24
3.2
24
68
18
72
12
17
1
67
1.28
77596--77644
22
2.2
22
85
7
64
34
8
2
55
1.41

Tables:   1

The End!