genome.fa.s3300.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003300.1 Hibiscus syriacus cultivar Beakdansim tig00006942_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  130599

Tables:   1   

This is table  1  of  1  ( 57 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2792--2827	19	1.9	19	88	5	56	47	2	8	41	1.48
2776--2863	45	2.0	42	85	10	115	46	2	6	44	1.42
4782--4839	30	1.9	30	92	0	98	17	6	18	56	1.62
4877--4962	11	7.8	11	82	0	82	13	12	19	53	1.72
4876--4962	22	4.0	22	78	0	93	13	12	19	54	1.71
4877--4962	33	2.6	33	86	0	109	13	12	19	53	1.72
14465--14511	19	2.5	19	100	0	94	59	10	12	17	1.60
14717--14747	15	2.0	15	93	6	53	35	12	0	51	1.40
15657--15730	9	8.7	9	71	21	61	41	0	0	58	0.98
15634--15730	34	2.9	34	96	1	178	41	0	0	58	0.98
15649--15730	25	3.2	25	81	10	87	40	0	0	59	0.97
26791--26923	61	2.2	61	80	5	148	35	21	6	36	1.78
30547--30575	14	2.1	14	100	0	58	27	20	20	31	1.98
33220--33376	78	2.0	78	98	0	305	36	17	14	31	1.90
38217--38395	43	4.1	43	75	2	144	30	14	24	30	1.95
38217--38395	86	2.1	87	81	2	207	30	14	24	30	1.95
38235--38468	43	5.4	43	76	1	209	29	16	20	32	1.95
38355--38489	43	3.1	43	77	4	103	24	21	18	35	1.95
38891--38962	21	3.4	21	80	0	90	6	30	15	47	1.72
38894--38984	42	2.2	42	81	0	101	6	30	18	43	1.76
47753--47793	3	13.7	3	100	0	82	31	0	0	68	0.90
50145--50188	22	2.0	22	86	0	61	22	11	4	61	1.48
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
54875--55335	115	4.0	115	94	1	773	34	14	20	30	1.93
54875--55335	231	2.0	229	93	1	789	34	14	20	30	1.93
56491--56657	76	2.2	75	84	1	208	31	19	20	28	1.97
57532--57679	50	2.9	51	80	7	165	40	15	20	23	1.90
58395--58632	115	2.1	113	88	1	350	37	14	20	28	1.91
58540--58705	73	2.3	73	86	0	224	32	17	18	31	1.94
58661--59170	123	4.2	123	92	2	778	39	15	19	26	1.91
59282--59322	19	2.2	18	91	4	64	36	0	2	60	1.10
60783--60814	3	10.7	3	93	0	55	31	3	0	65	1.08
60777--60814	12	3.2	12	92	0	58	28	5	0	65	1.14
61098--61176	42	1.9	39	82	7	95	41	2	5	50	1.38
63219--63560	42	8.1	42	89	0	477	26	20	16	35	1.94
64563--64611	23	2.2	22	85	10	64	30	18	10	40	1.84
65086--65261	83	2.1	82	82	5	212	35	20	13	30	1.91
65100--65263	42	4.0	41	70	12	102	35	19	13	31	1.90
76290--76340	20	2.6	20	90	3	77	35	15	5	43	1.71
80466--80516	20	2.6	20	90	3	77	35	15	5	43	1.71
85944--86050	42	2.5	42	84	0	151	29	17	23	28	1.97
86789--86837	22	2.2	22	96	0	89	32	14	16	36	1.89
87571--87654	42	2.0	42	90	0	132	21	17	21	39	1.93
87868--87967	18	5.3	18	73	19	89	37	3	1	59	1.20
87865--87964	3	32.3	3	74	15	80	37	3	1	59	1.20
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
87867--87963	16	6.0	16	76	17	78	38	3	1	57	1.21
91802--91827	2	13.0	2	100	0	52	50	0	0	50	1.00
92310--92382	25	2.9	24	88	8	101	41	1	24	32	1.64
97133--97167	11	3.2	11	87	0	52	8	11	2	77	1.10
97924--97964	21	2.0	21	86	13	59	29	17	2	51	1.58
98448--98695	69	3.7	69	77	7	208	41	8	14	36	1.75
98630--98942	105	3.0	105	81	6	372	39	10	17	32	1.84
106464--106516	21	2.6	21	78	3	54	45	18	13	22	1.84
111138--111167	12	2.4	13	88	11	53	33	23	13	30	1.93
116626--116681	28	2.0	28	89	0	85	57	17	12	12	1.66
116626--116677	14	3.7	14	78	0	59	55	17	13	13	1.69
123945--123994	12	4.2	12	82	7	57	36	2	4	58	1.29
124486--124522	18	2.1	18	89	0	56	72	2	2	21	1.09

Tables:   1

The End!