genome.fa.s3301.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003301.1 Hibiscus syriacus cultivar Beakdansim tig00006947_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  59668

Tables:   1   

This is table  1  of  1  ( 40 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
724--771	18	2.6	18	83	9	53	27	16	29	27	1.97
616--803	64	3.0	64	79	8	172	27	17	24	30	1.97
1155--1403	32	7.8	32	88	6	357	34	19	18	27	1.95
5647--5699	22	2.5	22	87	3	81	22	13	30	33	1.92
10354--10414	25	2.4	25	97	0	113	27	8	26	37	1.85
15621--15757	68	2.0	68	97	0	256	47	12	3	36	1.59
15738--15762	2	12.5	2	100	0	50	48	0	0	52	1.00
16628--16664	2	19.5	2	89	10	60	51	0	0	48	1.00
16994--17041	2	24.0	2	100	0	96	50	0	0	50	1.00
18489--18568	3	27.0	3	82	7	101	65	1	1	32	1.09
18905--19466	121	4.7	119	78	12	577	26	17	15	40	1.90
18905--19466	235	2.4	237	90	3	848	26	17	15	40	1.90
23836--23906	35	2.0	35	83	0	88	59	0	14	26	1.36
29560--29596	3	12.0	3	94	5	65	67	0	0	32	0.91
29969--30015	21	2.2	21	88	0	76	19	25	17	38	1.92
30019--30122	20	5.2	20	91	0	163	41	17	18	23	1.90
30318--30383	22	3.0	22	86	0	96	24	40	13	21	1.89
30719--30809	20	4.6	20	81	6	96	14	16	23	46	1.83
30773--30816	20	2.2	20	91	0	70	11	13	20	54	1.69
32684--32820	20	7.5	20	70	21	86	41	21	18	18	1.90
32707--32787	33	2.4	33	77	2	81	45	20	19	13	1.84
32744--32858	53	2.2	53	81	6	126	42	20	20	16	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32687--32852	87	1.9	87	91	0	269	42	20	19	16	1.89
32848--32931	20	4.2	20	90	0	123	19	20	21	39	1.93
33425--33460	18	2.0	18	94	0	63	22	33	19	25	1.97
33423--33503	21	4.0	20	73	12	76	20	34	20	23	1.97
34887--34922	14	2.6	14	90	0	54	30	0	22	47	1.52
35042--35095	14	3.5	14	73	22	54	44	20	24	11	1.83
35022--35117	33	2.9	34	92	3	158	42	19	23	13	1.87
35055--35122	20	3.8	19	72	21	74	47	19	22	11	1.81
35128--35194	20	3.7	19	73	20	72	13	22	19	44	1.85
35132--35227	33	2.9	34	88	3	140	13	23	20	41	1.88
35199--35267	20	3.5	20	86	4	95	18	21	23	36	1.95
38577--38630	20	2.7	20	100	0	108	25	18	25	29	1.98
38627--38743	20	5.8	20	83	7	96	20	18	21	39	1.93
38641--38743	41	2.5	40	85	4	136	21	19	20	38	1.93
38672--38758	41	2.1	41	86	0	120	25	19	19	35	1.95
38740--38785	21	2.2	21	88	0	65	41	17	23	17	1.90
40163--40248	3	29.0	3	86	6	77	60	1	1	37	1.12
43550--43579	14	2.2	14	94	5	53	33	0	0	66	0.92

Tables:   1

The End!