genome.fa.s3302.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003302.1 Hibiscus syriacus cultivar Beakdansim tig00006948_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  146899

Tables:   1   

This is table  1  of  1  ( 102 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
271--318	18	2.5	20	80	16	64	25	31	20	22	1.98
525--562	20	1.9	20	88	0	58	28	18	2	50	1.61
17142--17216	35	2.1	35	85	4	98	37	26	24	12	1.90
17318--17431	24	4.8	24	80	11	85	43	18	14	23	1.86
19860--19898	18	2.2	18	90	0	60	10	20	51	17	1.74
22010--22076	24	2.8	24	86	8	100	35	20	16	26	1.94
24536--24591	18	3.2	18	82	2	69	10	19	48	21	1.79
25669--25738	32	2.2	32	92	0	113	35	0	34	30	1.58
25956--25988	16	2.0	17	88	5	50	63	0	0	36	0.95
27510--27537	2	14.0	2	100	0	56	50	0	0	50	1.00
29379--29460	15	5.5	15	88	2	121	37	7	19	35	1.80
29379--29460	30	2.8	30	94	1	139	37	7	19	35	1.80
29374--29460	45	2.0	44	93	2	147	40	6	19	33	1.78
29443--29512	20	3.5	20	94	0	122	41	8	14	35	1.76
29668--29768	28	3.5	28	78	18	93	52	1	0	44	1.19
29782--29825	22	2.0	23	86	4	63	54	0	0	45	0.99
29787--29830	22	2.0	22	82	8	54	54	0	0	45	0.99
30031--30146	42	2.8	42	95	0	214	44	19	18	16	1.86
31057--31087	13	2.4	13	94	0	53	70	3	25	0	1.02
37346--37438	38	2.4	38	83	3	116	29	22	7	40	1.81
37791--38132	131	2.6	132	80	3	327	33	18	16	32	1.93
38066--38172	41	2.6	41	83	0	106	38	20	14	27	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38081--38173	41	2.3	41	84	0	114	39	20	12	26	1.89
38487--38564	41	1.9	41	83	0	102	34	19	16	29	1.94
38104--38960	131	6.6	130	76	6	585	34	19	15	31	1.93
39334--39392	3	20.3	3	89	6	95	30	0	0	69	0.89
44232--44284	20	2.7	20	88	5	72	43	22	18	15	1.87
44293--44497	20	10.1	20	76	6	198	38	24	17	20	1.93
44293--44497	40	5.0	41	89	1	306	38	24	17	20	1.93
45067--45145	20	3.9	21	83	5	85	50	17	18	12	1.77
45127--45191	14	4.3	14	73	17	58	46	21	23	9	1.80
45122--45202	33	2.5	33	93	0	135	46	22	20	9	1.80
45198--45281	19	4.7	19	75	14	97	11	20	21	46	1.82
45198--45335	52	2.6	52	86	2	177	13	23	20	43	1.86
45279--45334	20	2.8	20	78	10	78	16	26	17	39	1.91
45203--45343	19	7.8	19	71	17	95	12	22	19	45	1.84
47032--47410	94	4.1	94	93	1	620	21	12	18	48	1.80
47498--47532	17	2.1	17	88	0	52	45	20	20	14	1.85
47474--47562	19	4.7	19	72	8	65	47	21	17	13	1.82
47549--47575	14	1.9	14	100	0	54	48	29	14	7	1.71
47531--47594	33	1.9	33	96	0	119	48	28	15	7	1.73
47514--47600	19	4.8	19	80	13	103	48	26	17	8	1.74
47644--47710	20	3.3	20	91	0	98	20	19	20	38	1.93
49582--49617	14	2.6	14	90	0	54	30	0	22	47	1.52
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49719--49797	33	2.4	33	84	2	95	39	21	24	15	1.91
49832--49900	33	2.1	34	88	2	104	46	18	21	13	1.83
49909--50128	60	4.0	52	78	11	181	15	21	22	40	1.91
50001--50109	20	5.4	20	85	4	148	18	21	24	35	1.95
50097--50123	14	1.9	14	100	0	54	7	29	29	33	1.85
53475--53648	20	8.6	20	80	2	186	20	18	22	37	1.94
53470--53667	61	3.3	60	78	7	186	19	18	23	38	1.93
53475--53648	40	4.3	41	88	1	253	20	18	22	37	1.94
53475--53686	81	2.6	80	86	3	264	19	17	23	39	1.93
53473--53686	20	10.6	20	76	6	155	19	18	23	38	1.93
53736--53789	20	2.7	19	75	8	63	16	18	31	33	1.93
56337--56362	3	8.7	3	100	0	52	30	0	0	69	0.89
56337--56380	9	4.9	10	89	10	53	27	0	0	72	0.85
63579--63632	20	2.7	20	83	16	60	77	1	11	9	1.06
63620--63722	15	6.8	15	76	13	70	76	0	20	2	0.91
63579--63692	45	2.6	44	80	14	119	77	0	14	7	1.03
63577--63722	37	3.8	37	77	12	118	76	0	17	5	1.02
63619--63729	30	3.6	29	78	12	100	75	0	20	3	0.95
63625--63722	7	13.3	7	77	14	99	76	0	20	3	0.92
67243--67950	134	5.3	134	77	5	617	33	21	15	30	1.94
67242--67952	268	2.7	267	79	6	765	33	21	15	30	1.94
74126--74161	18	1.9	19	88	5	56	55	0	2	41	1.14
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
83514--83702	36	5.2	36	88	5	222	37	23	18	20	1.94
84084--84695	51	11.8	51	86	5	759	33	20	25	21	1.97
84084--84695	104	5.9	104	87	4	819	33	20	25	21	1.97
84649--85146	55	9.2	54	89	3	616	28	15	28	27	1.96
84693--85146	108	4.2	108	95	0	773	28	14	28	28	1.95
89892--89930	20	2.0	20	89	0	60	33	28	7	30	1.85
93430--93498	3	23.3	3	77	14	72	57	0	0	42	0.98
93430--93484	22	2.5	24	77	20	73	60	0	0	40	0.97
93430--93498	21	3.3	22	88	9	101	57	0	0	42	0.98
93656--94187	76	7.0	75	96	0	893	35	21	20	22	1.96
93673--94193	150	3.5	146	84	7	645	36	20	20	22	1.95
94595--95497	113	8.0	113	95	1	1489	27	17	15	38	1.91
95897--95951	22	2.5	22	87	0	83	40	12	12	34	1.82
96316--96398	40	2.1	40	97	0	157	28	18	12	40	1.86
96358--96513	54	2.9	54	84	5	217	24	21	14	39	1.91
100947--100984	20	2.0	20	94	5	69	0	18	0	81	0.69
101286--101320	2	17.5	2	100	0	70	51	0	0	48	1.00
105883--105907	7	3.6	7	100	0	50	32	0	0	68	0.90
108025--108093	3	23.3	3	77	14	72	57	0	0	42	0.98
108025--108079	22	2.5	24	77	20	73	60	0	0	40	0.97
108025--108093	21	3.3	22	88	9	101	57	0	0	42	0.98
114172--114196	12	2.1	12	100	0	50	16	24	0	60	1.36
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
115921--115997	23	3.3	23	75	0	64	36	6	7	49	1.58
123465--123542	32	2.4	32	97	0	147	32	28	24	15	1.95
125388--125437	21	2.4	21	100	0	100	40	4	14	42	1.64
128168--128299	32	4.1	33	75	13	116	30	26	23	19	1.98
129588--129660	21	3.4	21	84	1	83	36	23	10	28	1.89
129597--129682	21	3.9	22	83	3	86	38	25	11	24	1.89
129610--129682	23	3.3	23	80	7	87	41	24	10	23	1.86
131324--131400	23	3.4	22	75	3	82	20	18	18	42	1.89
138189--138229	21	2.0	21	95	0	73	31	17	14	36	1.90
138195--138247	21	2.4	21	84	6	61	33	13	18	33	1.90
138329--138378	23	2.2	23	85	0	64	18	24	20	38	1.93
143522--143568	21	2.2	21	84	0	58	36	21	14	27	1.93
143546--143602	23	2.5	24	77	13	66	35	24	12	28	1.91
144442--144490	19	2.6	19	100	0	98	26	34	16	22	1.95

Tables:   1

The End!