genome.fa.s3303.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003303.1 Hibiscus syriacus cultivar Beakdansim tig00006949_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  100828

Tables:   1   

This is table  1  of  1  ( 98 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1081--1113	16	2.1	16	88	11	50	18	21	6	54	1.64
6632--6773	31	4.6	31	95	0	257	18	18	22	40	1.91
7482--7523	21	2.0	21	90	0	66	26	21	26	26	1.99
7915--7941	13	2.1	13	100	0	54	7	29	22	40	1.81
11288--11341	22	2.4	22	87	6	72	44	18	18	18	1.87
12086--12207	31	3.9	31	72	10	106	33	17	18	31	1.94
15381--15473	27	3.4	27	95	0	168	29	19	15	36	1.92
17582--17664	3	27.3	3	87	2	103	59	0	0	40	0.98
17894--18679	113	7.0	113	92	2	1260	31	18	15	35	1.92
17894--18679	342	2.3	339	91	2	1260	31	18	15	35	1.92
19403--19783	83	4.6	83	96	0	683	37	21	14	26	1.92
20576--20612	16	2.3	16	90	9	58	54	5	8	32	1.53
28275--28306	15	2.1	15	94	0	55	46	9	18	25	1.79
33757--33845	3	29.3	3	88	2	133	61	0	0	38	0.96
35764--35815	27	1.9	27	84	7	70	75	0	9	15	1.05
38978--39072	21	4.7	20	70	13	59	32	28	18	20	1.96
39060--39235	20	8.8	20	74	6	113	38	23	18	19	1.93
39101--39248	40	3.7	40	88	2	208	39	23	17	18	1.92
39101--39244	20	7.2	20	77	7	139	38	23	18	19	1.93
41069--41113	18	2.4	19	92	7	83	48	15	20	15	1.80
41144--41237	33	2.8	33	88	3	125	12	23	21	42	1.87
41341--41377	14	2.6	14	86	0	56	48	21	0	29	1.50
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42731--42842	42	2.7	42	76	5	111	22	18	37	21	1.94
43322--43404	20	4.2	20	88	0	121	38	20	18	22	1.93
43443--43486	19	2.3	19	88	0	61	13	15	27	43	1.85
43452--43521	19	3.9	18	78	17	76	7	14	27	51	1.68
43477--43503	14	1.9	14	100	0	54	7	14	29	48	1.71
43458--43521	33	1.9	33	93	0	110	7	14	26	51	1.69
43507--43568	31	1.9	32	87	6	90	9	22	20	46	1.80
43656--44035	94	4.1	94	94	1	665	47	18	12	21	1.82
45735--45805	20	3.6	19	86	5	97	42	21	22	14	1.88
45726--45857	19	7.1	19	80	11	130	44	19	21	13	1.85
45864--45974	20	5.8	20	78	13	101	10	19	19	49	1.77
46510--46703	20	9.6	20	79	7	203	19	17	25	37	1.93
46510--46684	41	4.3	40	83	7	203	18	17	26	37	1.93
46712--46764	20	2.7	20	88	5	72	13	20	24	41	1.88
51185--51210	7	3.7	7	100	0	52	61	38	0	0	0.96
52713--52824	31	3.6	31	91	0	179	41	22	16	18	1.90
53555--53608	20	2.7	20	100	0	108	25	33	16	24	1.96
54645--54724	35	2.3	35	91	4	126	31	0	23	45	1.54
55055--55080	13	2.0	13	100	0	52	61	0	0	38	0.96
58702--58955	63	4.0	63	93	1	413	29	18	20	31	1.96
58702--58955	31	8.1	31	78	9	264	29	18	20	31	1.96
62122--62354	31	7.4	31	79	8	238	30	18	19	31	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
62119--62372	63	4.0	63	93	1	404	30	18	20	30	1.96
64492--64605	20	5.7	20	93	0	174	38	19	19	22	1.93
64473--64621	60	2.5	60	78	8	185	34	22	19	23	1.96
64802--64857	22	2.5	22	88	0	76	23	41	10	25	1.86
65180--65270	20	4.6	20	87	1	103	14	17	23	45	1.85
65234--65277	20	2.2	20	91	0	70	11	13	20	54	1.69
67147--67303	20	8.5	20	75	18	126	42	21	18	17	1.90
67170--67325	34	4.5	34	74	14	147	42	21	19	16	1.89
67348--67456	20	5.4	20	93	0	164	22	20	23	33	1.97
67989--68047	21	2.8	21	74	5	57	22	38	20	18	1.93
69427--69462	14	2.6	14	90	0	54	30	0	22	47	1.52
69568--69621	14	3.5	14	73	22	54	44	20	24	11	1.83
69568--69642	33	2.2	34	97	2	143	45	20	22	12	1.83
69654--69720	20	3.7	19	73	20	72	13	22	19	44	1.85
69658--69742	33	2.5	33	92	1	134	14	23	18	43	1.87
69725--69778	20	2.7	20	88	5	83	18	20	25	35	1.95
72188--72241	24	2.2	24	90	0	81	42	20	16	20	1.89
73083--73149	20	3.3	20	93	0	107	23	19	23	32	1.97
73143--73285	20	7.1	20	83	1	187	21	18	18	41	1.90
73123--73293	40	4.3	41	80	3	170	23	18	18	40	1.91
73136--73330	60	3.2	59	78	9	187	25	17	20	36	1.94
74421--74460	2	20.0	2	100	0	80	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
74733--74951	32	7.0	30	77	11	206	32	17	19	30	1.95
74730--74979	63	4.0	63	91	1	387	30	17	20	31	1.96
74730--74983	31	8.1	31	77	11	248	30	17	20	31	1.96
75680--75732	12	4.6	12	83	9	65	16	22	20	39	1.92
78050--78128	35	2.4	33	85	6	97	34	1	0	64	1.02
82561--82639	39	2.0	39	100	0	158	40	21	15	22	1.90
83361--83411	17	3.0	18	75	13	54	62	5	1	29	1.29
83562--83595	2	17.5	2	93	6	61	50	0	0	50	1.00
83642--83700	29	2.0	29	100	0	118	23	13	13	49	1.78
88325--88362	14	2.7	14	84	11	51	21	10	28	39	1.86
92987--93099	33	3.2	33	86	13	172	36	34	15	14	1.87
92987--93087	39	2.7	39	91	8	160	36	34	12	15	1.86
93084--93154	32	2.2	32	89	0	106	30	29	30	8	1.87
93142--93236	29	3.3	29	95	0	163	13	30	32	23	1.93
93263--93378	50	2.4	50	90	7	170	20	37	18	22	1.94
93592--93630	16	2.3	18	86	8	55	38	0	5	56	1.22
93735--93824	45	2.0	47	85	12	125	40	0	11	48	1.39
93863--93938	33	2.3	32	82	12	93	40	0	11	47	1.40
93984--94030	16	3.0	16	84	9	53	29	0	10	59	1.31
94005--94035	15	2.1	14	94	5	53	38	0	6	54	1.26
96178--96210	17	1.9	17	93	0	57	45	12	6	36	1.66
96205--96245	21	2.0	21	85	0	55	46	4	7	41	1.53
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
96363--96402	14	2.9	14	88	3	55	47	5	2	45	1.38
96345--96578	12	18.9	12	70	14	77	46	7	2	44	1.45
96348--96588	26	9.7	26	74	12	184	46	7	2	43	1.46
96377--96646	124	2.2	123	91	2	436	45	8	1	43	1.46
99358--99410	23	2.3	23	96	0	97	45	3	0	50	1.19
99442--99502	24	2.4	25	81	10	63	40	3	4	50	1.40
99732--99791	18	3.3	19	76	17	65	53	11	0	35	1.38
100234--100265	8	4.0	8	100	0	64	50	12	0	37	1.41
100285--100333	21	2.3	21	82	3	62	51	18	0	30	1.47
100762--100827	33	1.9	34	87	6	98	25	16	30	27	1.97

Tables:   1

The End!