Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003304.1 Hibiscus syriacus cultivar Beakdansim tig00006950_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  84212

Tables:   1   

This is table  1  of  1  ( 55 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2832--2907
36
2.1
36
97
2
145
32
21
13
32
1.91
14071--14146
36
2.1
36
87
2
109
43
25
1
30
1.63
14142--14218
35
2.2
35
83
0
100
44
0
12
42
1.43
15308--15355
23
2.1
23
84
0
60
37
22
0
39
1.55
15548--15713
71
2.3
71
81
1
179
23
15
7
53
1.67
19011--19077
18
3.7
18
87
0
80
32
38
13
14
1.86
19026--19079
18
3.0
18
91
0
90
31
37
14
16
1.89
19087--19151
29
2.2
30
80
5
78
30
38
12
18
1.88
19098--19156
29
2.0
29
86
0
82
28
35
15
20
1.93
19138--19203
17
3.9
17
76
6
62
34
36
10
18
1.85
19189--19222
13
2.5
14
85
4
52
44
35
0
20
1.52
20009--20096
10
8.5
10
82
17
101
44
0
0
55
0.99
20020--20096
23
3.5
21
94
5
111
45
0
0
54
0.99
20010--20077
13
5.6
13
78
21
85
42
0
0
57
0.98
20012--20096
33
2.6
32
85
14
97
44
0
0
55
0.99
21307--21338
16
2.0
16
93
0
55
65
0
0
34
0.93
29981--30041
21
3.2
21
63
26
53
31
3
16
49
1.62
29980--30061
36
2.3
36
91
2
130
31
3
18
46
1.66
32000--32044
23
2.0
23
86
8
65
22
17
13
46
1.83
36283--36403
59
2.1
59
93
0
206
24
16
23
35
1.95
38340--38392
21
2.5
21
100
0
106
26
30
11
32
1.91
43614--43677
25
2.6
25
97
2
121
39
0
0
60
0.97
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
43614--43694
25
3.0
26
87
12
119
40
0
0
59
0.98
43614--43683
3
23.0
3
85
8
97
38
0
0
61
0.96
44106--44179
23
3.3
21
79
7
76
79
4
16
0
0.87
44093--44179
44
2.0
43
84
13
115
75
5
18
0
0.99
44106--44173
35
1.9
35
82
5
84
79
4
16
0
0.89
44108--44179
28
2.6
26
78
10
81
80
4
15
0
0.86
45036--45085
11
4.5
11
82
2
55
32
0
4
64
1.12
45094--45140
23
2.0
24
87
4
69
31
0
2
65
1.04
45980--46031
20
2.6
21
76
11
56
26
7
0
65
1.20
50658--50705
4
12.8
4
78
12
57
79
0
20
0
0.74
50658--50709
11
4.7
11
86
6
70
80
0
19
0
0.71
52880--53102
114
2.0
114
89
1
340
34
14
19
31
1.92
55094--55248
54
2.9
54
93
0
247
38
16
21
23
1.92
56312--57259
76
12.5
76
96
0
1700
22
20
21
35
1.96
57385--57459
25
2.9
25
94
4
123
38
0
0
61
0.96
57386--57455
3
23.0
3
82
8
88
37
0
0
62
0.95
57879--57950
23
3.0
22
76
11
72
79
4
16
0
0.89
57881--57951
27
2.6
26
78
8
79
80
4
15
0
0.86
57866--57951
43
2.0
44
84
11
115
75
5
18
0
1.00
58807--58856
11
4.5
11
82
2
55
32
0
4
64
1.12
58865--58911
23
2.0
24
87
4
69
31
0
2
65
1.04
64194--64236
14
3.1
15
80
12
56
58
0
0
41
0.98
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
67365--67398
18
1.9
18
88
5
52
47
0
5
47
1.26
68565--68781
95
2.3
95
92
4
352
47
10
5
36
1.62
68759--68802
19
2.3
19
100
0
88
72
9
4
13
1.24
68658--68905
114
2.2
114
89
3
376
50
8
5
35
1.56
68841--68873
15
2.1
17
88
11
52
33
15
6
45
1.70
73266--73315
2
25.0
2
100
0
100
50
0
0
50
1.00
74495--74872
202
1.9
202
100
0
756
23
24
30
21
1.99
75095--75147
16
3.2
16
81
5
61
58
0
5
35
1.22
76865--76955
38
2.4
38
82
8
114
13
12
36
38
1.81
81038--81072
2
17.5
2
100
0
70
51
0
0
48
1.00
83400--83468
2
36.0
2
91
8
117
49
0
0
50
1.00

Tables:   1

The End!