genome.fa.s3305.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003305.1 Hibiscus syriacus cultivar Beakdansim tig00006951_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  100740

Tables:   1   

This is table  1  of  1  ( 39 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14497--14541	23	2.0	22	86	4	63	22	4	0	73	1.01
15297--15323	12	2.2	12	100	0	54	29	0	7	62	1.22
15545--15572	2	14.0	2	100	0	56	50	0	0	50	1.00
15945--15992	10	4.6	10	80	16	53	62	14	16	6	1.51
16790--16863	34	2.2	32	84	13	96	17	9	4	68	1.32
18919--19068	77	1.9	78	89	2	232	35	20	11	32	1.88
23009--23041	2	16.5	2	93	0	57	51	3	0	45	1.16
24484--25003	200	2.5	201	86	4	693	22	17	24	35	1.95
24667--25001	106	3.2	106	93	0	562	21	16	24	37	1.94
25629--25713	37	2.3	37	81	4	91	42	15	17	24	1.88
26347--26382	18	2.0	18	94	0	63	41	33	8	16	1.78
27457--27507	16	3.3	15	84	13	68	0	15	7	76	1.00
33736--33880	43	3.4	43	95	0	245	11	25	19	44	1.83
35712--35769	29	2.1	28	80	6	64	32	25	3	37	1.73
36151--36199	24	2.0	24	96	0	89	46	18	12	22	1.82
42351--42389	3	12.7	3	94	5	69	35	0	0	64	0.94
43939--44034	30	3.3	28	77	11	95	18	14	11	55	1.69
43961--44037	29	2.6	29	83	6	84	16	16	10	55	1.68
44743--44775	14	2.4	14	90	10	50	30	0	6	63	1.18
47443--47472	13	2.3	13	94	0	51	56	3	0	40	1.16
48723--48782	13	4.5	13	74	14	50	76	5	11	6	1.13
50136--50541	47	9.3	46	72	17	273	29	24	18	27	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50139--50487	128	2.7	128	95	0	617	30	25	18	25	1.98
50280--50594	175	1.8	175	88	2	481	29	26	17	26	1.98
50917--50963	7	6.6	7	81	13	60	40	0	0	59	0.97
50916--50959	3	13.7	3	81	13	52	38	0	0	61	0.96
50916--50963	13	3.9	13	78	15	57	39	0	0	60	0.97
52525--52617	29	3.2	29	78	6	98	16	18	12	52	1.74
52525--52634	58	1.9	57	83	1	139	16	18	11	53	1.72
53509--53560	27	1.9	27	92	0	86	57	9	15	17	1.64
53982--54009	2	14.0	2	100	0	56	50	0	0	50	1.00
61354--61434	40	2.0	40	100	0	162	29	2	33	34	1.71
65987--66034	21	2.2	23	85	7	64	52	2	2	43	1.24
69585--69717	63	2.1	62	94	1	230	33	30	14	21	1.93
79976--80124	76	1.9	77	89	1	228	34	22	12	31	1.90
93567--93677	31	3.6	31	75	9	93	29	18	20	30	1.97
93660--93790	30	4.4	30	98	0	244	23	20	23	32	1.98
98434--98535	31	3.3	30	78	6	105	33	16	18	31	1.94
98546--98646	30	3.4	30	95	0	175	23	19	23	32	1.98

Tables:   1

The End!