Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003306.1 Hibiscus syriacus cultivar Beakdansim tig00006952_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  66351

Tables:   1   

This is table  1  of  1  ( 23 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1--75
21
3.6
21
73
7
71
21
18
38
21
1.93
599--647
20
2.4
22
77
19
61
32
22
22
22
1.98
652--690
19
2.0
20
90
5
62
51
20
15
12
1.76
1394--1647
127
2.0
127
94
3
449
21
25
29
23
1.99
4191--4253
22
2.8
22
79
11
58
17
22
36
23
1.95
9973--10223
128
2.0
127
92
3
425
19
24
31
23
1.98
12914--12960
22
2.1
22
92
0
76
21
17
42
19
1.89
12929--12971
22
2.0
22
90
0
68
20
13
44
20
1.86
13137--13200
20
3.2
20
75
20
78
26
18
26
28
1.98
13289--13325
19
1.9
19
94
0
65
21
16
29
32
1.95
18622--18655
2
17.0
2
100
0
68
50
0
50
0
1.00
27096--27180
34
2.5
34
98
0
161
40
0
0
60
0.97
32005--32061
2
28.5
2
96
0
105
50
1
0
47
1.11
32451--32486
2
18.0
2
100
0
72
50
0
0
50
1.00
34822--34884
33
1.9
33
83
0
81
17
58
6
17
1.58
39332--39359
2
14.0
2
100
0
56
50
0
0
50
1.00
44833--44940
47
2.2
50
80
9
125
21
28
23
26
1.99
45809--45895
35
2.5
34
80
12
97
55
10
8
26
1.61
45980--46012
17
2.0
17
88
5
50
75
6
0
18
1.00
46836--46907
22
3.3
22
98
0
135
16
29
22
31
1.96
48253--48293
18
2.3
18
87
4
57
60
2
7
29
1.36
48446--48586
51
2.8
51
80
5
135
24
26
28
20
1.99
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
56234--56295
23
2.7
23
97
0
115
22
25
30
20
1.98

Tables:   1

The End!