Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003307.1 Hibiscus syriacus cultivar Beakdansim tig00006957_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  54858

Tables:   1   

This is table  1  of  1  ( 24 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3048--3119
28
2.5
29
80
8
85
56
6
9
26
1.56
7223--7259
19
2.0
20
89
10
60
18
8
5
67
1.36
13734--13762
14
2.1
14
100
0
58
6
13
27
51
1.66
19631--19664
16
2.2
16
94
5
61
23
0
0
76
0.79
19624--19664
16
2.5
17
84
15
59
24
0
2
73
0.96
24156--24238
24
3.5
24
70
9
73
37
12
33
16
1.86
41437--41503
26
2.6
26
97
0
125
19
40
17
22
1.92
46163--46202
20
2.0
21
95
5
73
20
25
12
42
1.86
46164--46209
21
2.2
20
88
3
65
23
23
15
36
1.93
46202--46290
20
4.5
20
92
1
144
41
20
19
19
1.91
46342--46403
31
2.0
31
90
0
97
27
24
19
29
1.98
46277--46414
20
7.3
20
76
14
150
28
26
18
26
1.98
46576--46627
22
2.4
22
96
3
97
25
38
7
28
1.83
47270--47321
23
2.2
24
89
3
79
23
17
19
40
1.91
49673--49741
20
3.5
19
84
7
93
36
26
20
17
1.94
49733--49806
33
2.2
34
92
2
123
48
18
20
12
1.80
49825--49918
33
2.8
34
86
3
127
15
23
17
43
1.87
50017--50053
14
2.6
14
86
0
56
48
21
0
29
1.50
51975--52046
20
3.6
20
94
0
117
33
22
20
23
1.97
52093--52184
33
2.7
34
76
3
105
15
19
20
44
1.86
52159--52210
20
2.6
20
87
0
86
19
21
21
38
1.94
52042--52204
87
1.9
87
88
0
245
17
20
19
43
1.88
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
54070--54112
20
2.2
20
91
0
68
51
23
13
11
1.74
54730--54858
20
6.6
20
91
3
217
20
19
19
41
1.91

Tables:   1

The End!