Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01003308.1 Hibiscus syriacus cultivar Beakdansim tig00006960_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 85614
ACGTcount: A:0.34, C:0.16, G:0.16, T:0.34
Found at i:4660 original size:36 final size:37
Alignment explanation
Indices: 4599--5033 Score: 398
Period size: 36 Copynumber: 11.8 Consensus size: 37
4589 TTGTAAATGG
*
4599 TTTTTGAAAATACGTATATAATATATAGTTTTT-AAAATA
1 TTTTT-AAAA-AC-TATATAATATATAGTTTTTAAAAACA
* ***
4638 TTTTTAAAAACTATATAATATATAG-TTTT-GAATTT
1 TTTTTAAAAACTATATAATATATAGTTTTTAAAAACA
*
4673 TTTTTAGAAAA-TATATATATTATATAGTTTTTAAAATCA
1 TTTTTA-AAAACTATATA-A-TATATAGTTTTTAAAAACA
*
4712 -TTTTGAAAACTTATATAATATATAGTTTTTTAAAAACA
1 TTTTTAAAAAC-TATATAATATATAG-TTTTTAAAAACA
* * * *
4750 TTTTTGAAAACATTTATATATTATATAACTTTTTAAAAATA
1 TTTTT-AAAA-A-CTATATAATATAT-AGTTTTTAAAAACA
*
4791 TTTTT-AAAA-TATATAATATATAATTTTTAAAAACA
1 TTTTTAAAAACTATATAATATATAGTTTTTAAAAACA
* *
4826 TTTTTAAAAAC-ATATAATATATAATTTTTCAAAACA
1 TTTTTAAAAACTATATAATATATAGTTTTTAAAAACA
* *
4862 TTTTTGAAAAC-ATATAA-ATATAAG-TTTTGAAAACA
1 TTTTTAAAAACTATATAATATAT-AGTTTTTAAAAACA
*
4897 TTTTCT-AAAACATATATATTATATAGTTTTT-AAAACA
1 TTTT-TAAAAAC-TATATAATATATAGTTTTTAAAAACA
* *
4934 TTTTTGAAAACATATATAATATATAGTTTTTAAAAATA
1 TTTTTAAAAAC-TATATAATATATAGTTTTTAAAAACA
* * *
4972 TTTTTGAAAA-TATAT-ATATATAATTTTTGAAAACA
1 TTTTTAAAAACTATATAATATATAGTTTTTAAAAACA
* *
5007 TTTTTAAATA-TGTATAATATATAGTTT
1 TTTTTAAAAACTATATAATATATAGTTT
5034 GAAAATGTTT
Statistics
Matches: 342, Mismatches: 30, Indels: 51
0.81 0.07 0.12
Matches are distributed among these distances:
35 88 0.26
36 92 0.27
37 61 0.18
38 48 0.14
39 21 0.06
40 3 0.01
41 28 0.08
42 1 0.00
ACGTcount: A:0.45, C:0.04, G:0.05, T:0.46
Consensus pattern (37 bp):
TTTTTAAAAACTATATAATATATAGTTTTTAAAAACA
Found at i:4699 original size:37 final size:36
Alignment explanation
Indices: 4571--5033 Score: 203
Period size: 35 Copynumber: 12.5 Consensus size: 36
4561 ATTTTTGTCC
**
4571 ATATATATATATTATAGTTTGTAAATGGTTTTT-GAAA
1 ATATATATATA-TATAGTTT-TAAATTATTTTTAGAAA
*
4608 ATACGTATATAATATATAGTTTTTAAAATATTTTTA-AAA
1 ATA--TATAT-ATATATAG-TTTTAAATTATTTTTAGAAA
* *
4647 ACTATATA-ATATATAGTTTTGAATTTTTTTTAGAAA
1 A-TATATATATATATAGTTTTAAATTATTTTTAGAAA
*
4683 ATATATATATTATATAGTTTTTAAAATCA-TTTT-GAAA
1 ATATATATA-TATATAG-TTTT-AAATTATTTTTAGAAA
**
4720 ACT-TATATAATATATAGTTTTTTAAAAACATTTTT-GAAAA
1 A-TATATAT-ATATATAG--TTTT-AAATTATTTTTAG-AAA
* * *
4760 CATTTATATATTATATAACTTTTTAAAAATATTTTT--AAA
1 -ATATATATA-TATAT-A-GTTTT-AAATTATTTTTAGAAA
* **
4799 ATATATA-ATATATAATTTTTAAAAACATTTTTA-AAA
1 ATATATATATATAT-AGTTTT-AAATTATTTTTAGAAA
* * **
4835 ACATATA-ATATATAATTTTTCAAAACATTTTT-GAAA
1 ATATATATATATAT-AGTTTT-AAATTATTTTTAGAAA
* * **
4871 ACATATAAATATA-AGTTTTGAAAACATTTTCTA-AAA
1 ATATATATATATATAGTTTT-AAATTATTTT-TAGAAA
**
4907 CATATATAT-TATATAGTTTTTAAAACATTTTT-GAAA
1 -ATATATATATATATAG-TTTTAAATTATTTTTAGAAA
* *
4943 ACATATATAATATATAGTTTTTAAAAATATTTTT-GAAA
1 ATATATAT-ATATATAG-TTTT-AAATTATTTTTAGAAA
* ** *
4981 ATATATATATATA-ATTTTTGAAAACATTTTTA-AAT
1 ATATATATATATATAGTTTT-AAATTATTTTTAGAAA
*
5016 ATGTATA-ATATATAGTTT
1 ATATATATATATATAGTTT
5034 GAAAATGTTT
Statistics
Matches: 362, Mismatches: 29, Indels: 72
0.78 0.06 0.16
Matches are distributed among these distances:
34 5 0.01
35 83 0.23
36 76 0.21
37 68 0.19
38 56 0.15
39 34 0.09
40 13 0.04
41 26 0.07
42 1 0.00
ACGTcount: A:0.45, C:0.04, G:0.05, T:0.46
Consensus pattern (36 bp):
ATATATATATATATAGTTTTAAATTATTTTTAGAAA
Found at i:4759 original size:12 final size:12
Alignment explanation
Indices: 4738--4874 Score: 57
Period size: 12 Copynumber: 11.1 Consensus size: 12
4728 AATATATAGT
4738 TTTTTAAAAACA
1 TTTTTAAAAACA
*
4750 TTTTTGAAAACA
1 TTTTTAAAAACA
4762 TTTATATATTATATAAC-
1 TTT-T-TA--A-A-AACA
*
4779 TTTTTAAAAATA
1 TTTTTAAAAACA
*
4791 TTTTT-AAAATA
1 TTTTTAAAAACA
** * *
4802 TATAATATATA-A
1 T-TTTTAAAAACA
4814 TTTTTAAAAACA
1 TTTTTAAAAACA
4826 TTTTTAAAAACA
1 TTTTTAAAAACA
** * *
4838 TATAATATATA-A
1 T-TTTTAAAAACA
*
4850 TTTTTCAAAACA
1 TTTTTAAAAACA
*
4862 TTTTTGAAAACA
1 TTTTTAAAAACA
4874 T
1 T
4875 ATAAATATAA
Statistics
Matches: 92, Mismatches: 21, Indels: 24
0.67 0.15 0.18
Matches are distributed among these distances:
11 18 0.20
12 53 0.58
13 9 0.10
14 1 0.01
15 2 0.02
16 2 0.02
17 4 0.04
18 3 0.03
ACGTcount: A:0.47, C:0.06, G:0.01, T:0.45
Consensus pattern (12 bp):
TTTTTAAAAACA
Found at i:4811 original size:43 final size:41
Alignment explanation
Indices: 4686--5011 Score: 254
Period size: 35 Copynumber: 8.8 Consensus size: 41
4676 TTAGAAAATA
* * *
4686 TATATATTATAT-AGTTTTTAAAATCA-TTTTGAAAAC--T
1 TATATAATATATAACTTTTTAAAAACATTTTTGAAAACATT
**
4723 TATATAATATATAGTTTTTTAAAAACATTTTTGAAAACATT
1 TATATAATATATAACTTTTTAAAAACATTTTTGAAAACATT
* *
4764 TATATATTATATAACTTTTTAAAAATATTTTT--AAA-A--
1 TATATAATATATAACTTTTTAAAAACATTTTTGAAAACATT
4800 TATATAATATATAA-TTTTTAAAAACATTTTT-AAAA-A--
1 TATATAATATATAACTTTTTAAAAACATTTTTGAAAACATT
* *
4836 CATATAATATATAA-TTTTTCAAAACATTTTTGAAAAC---
1 TATATAATATATAACTTTTTAAAAACATTTTTGAAAACATT
* *
4873 -ATATAA-ATATAA-GTTTTGAAAACATTTTCT-AAAACA--
1 TATATAATATATAACTTTTTAAAAACATTTT-TGAAAACATT
* *
4909 TATATATTATAT-AGTTTTT-AAAACATTTTTGAAAACA--
1 TATATAATATATAACTTTTTAAAAACATTTTTGAAAACATT
* *
4946 TATATAATATAT-AGTTTTTAAAAATATTTTTG-AAA-A--
1 TATATAATATATAACTTTTTAAAAACATTTTTGAAAACATT
*
4982 TATAT-ATATATAA-TTTTTGAAAACATTTTT
1 TATATAATATATAACTTTTTAAAAACATTTTT
5012 AAATATGTAT
Statistics
Matches: 254, Mismatches: 20, Indels: 32
0.83 0.07 0.10
Matches are distributed among these distances:
35 62 0.24
36 61 0.24
37 58 0.23
38 31 0.12
39 13 0.05
41 29 0.11
ACGTcount: A:0.46, C:0.05, G:0.04, T:0.46
Consensus pattern (41 bp):
TATATAATATATAACTTTTTAAAAACATTTTTGAAAACATT
Found at i:5150 original size:29 final size:29
Alignment explanation
Indices: 5083--5151 Score: 77
Period size: 29 Copynumber: 2.4 Consensus size: 29
5073 ATATAATATA
* *
5083 TATTTGTTTTTATTATTTAGTTTATTTTT
1 TATTCGTTTTTATTATTTAGTTTATTTCT
* *
5112 TATTCCTTTTTATATATTTATTTTATTTCT
1 TATTCGTTTTTAT-TATTTAGTTTATTTCT
*
5142 T-TTGGTTTTT
1 TATTCGTTTTT
5152 TTCCAGGTCC
Statistics
Matches: 33, Mismatches: 6, Indels: 2
0.80 0.15 0.05
Matches are distributed among these distances:
29 18 0.55
30 15 0.45
ACGTcount: A:0.16, C:0.04, G:0.06, T:0.74
Consensus pattern (29 bp):
TATTCGTTTTTATTATTTAGTTTATTTCT
Found at i:6422 original size:2 final size:2
Alignment explanation
Indices: 6412--6462 Score: 93
Period size: 2 Copynumber: 25.5 Consensus size: 2
6402 TTTCATTTAT
*
6412 TA TA CA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
6454 TA TA TA TA T
1 TA TA TA TA T
6463 TAATTTTTTT
Statistics
Matches: 47, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
2 47 1.00
ACGTcount: A:0.49, C:0.02, G:0.00, T:0.49
Consensus pattern (2 bp):
TA
Found at i:6652 original size:24 final size:24
Alignment explanation
Indices: 6611--6657 Score: 60
Period size: 24 Copynumber: 2.0 Consensus size: 24
6601 TTCCTTTAAT
*
6611 TTATTCAATATTTGTTTACTATTTA
1 TTATTCAACATTTGTTTAC-ATTTA
*
6636 TTATT-AACATTTTTTTACATTT
1 TTATTCAACATTTGTTTACATTT
6658 TTAGAGAAAT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
23 4 0.20
24 11 0.55
25 5 0.25
ACGTcount: A:0.28, C:0.09, G:0.02, T:0.62
Consensus pattern (24 bp):
TTATTCAACATTTGTTTACATTTA
Found at i:9086 original size:95 final size:95
Alignment explanation
Indices: 8960--9218 Score: 333
Period size: 95 Copynumber: 2.7 Consensus size: 95
8950 AGATTATAAT
*
8960 ATTATATATATACAATAAAACTTGAGCTGTCCCTCTAAAGCAATTGGTTAAATGCCCCGACTTTA
1 ATTATA-ATATACAATAAAACTTGAGCTGTCCCTCTAAAGCAATTGGTTAAACGCCCCGACTTTA
*
9025 TAGATAAGATTCAACTAGCCTGATAAAGGTG
65 TAGATAAGATTCAACTAACCTGATAAAGGTG
* * *
9056 ATTATAATATACAATAAAGCTTGAGTTGTCCCTCTAGAGCAATTGGTTAAACGCCCCGACTTTAT
1 ATTATAATATACAATAAAACTTGAGCTGTCCCTCTAAAGCAATTGGTTAAACGCCCCGACTTTAT
* * *
9121 GGATAATATTCAGCTAACCTGATAAAGGTG
66 AGATAAGATTCAACTAACCTGATAAAGGTG
* * * * *
9151 ATTATAATATCTACACAATGATA-TTAAGATGTCCCTCTAGAA-CAATTGGTTAAACGCCCCGGC
1 ATTATAATA--T--ACAATAAAACTTGAGCTGTCCCTCTA-AAGCAATTGGTTAAACGCCCCGAC
9214 TTTAT
61 TTTAT
9219 GGATTCAGTT
Statistics
Matches: 143, Mismatches: 15, Indels: 8
0.86 0.09 0.05
Matches are distributed among these distances:
95 90 0.63
96 6 0.04
97 1 0.01
98 39 0.27
99 7 0.05
ACGTcount: A:0.35, C:0.19, G:0.16, T:0.31
Consensus pattern (95 bp):
ATTATAATATACAATAAAACTTGAGCTGTCCCTCTAAAGCAATTGGTTAAACGCCCCGACTTTAT
AGATAAGATTCAACTAACCTGATAAAGGTG
Found at i:10485 original size:84 final size:84
Alignment explanation
Indices: 10336--10618 Score: 388
Period size: 84 Copynumber: 3.4 Consensus size: 84
10326 AAATTATTAA
10336 TAGCATAACTCAAGGCTAGAAGGGTTATCTGCCAACAAAAGACCTTCGAGTTCGACTACGCTCAG
1 TAGCATAACTCAAGGCTAGAAGGGTTATCTGCCAACAAAAGACCTTCGAGTTCGACTACGCTCAG
10401 CTCCAAGGCACATCATTTG
66 CTCCAAGGCACATCATTTG
* * * * * * *
10420 TAACATAGCTCAAGGCAAGAAGGGCTATTTGCCAACAAAAGACCTTCGAGTTTGACTATGCTCAG
1 TAGCATAACTCAAGGCTAGAAGGGTTATCTGCCAACAAAAGACCTTCGAGTTCGACTACGCTCAG
10485 CTCCAAGGCACATCATTTG
66 CTCCAAGGCACATCATTTG
* * * * * **
10504 CAGCATAACTCAAGGCTAGAAGGGTTATCTACCAACAAAATACCTTTGAGTTCGATTACATTCAG
1 TAGCATAACTCAAGGCTAGAAGGGTTATCTGCCAACAAAAGACCTTCGAGTTCGACTACGCTCAG
10569 CT-CAACGGCACATCATTTG
66 CTCCAA-GGCACATCATTTG
* * * *
10588 TAGTATAGCTCATGGCTATAAGGGTTATCTG
1 TAGCATAACTCAAGGCTAGAAGGGTTATCTG
10619 ACAGTTCGAT
Statistics
Matches: 171, Mismatches: 27, Indels: 2
0.86 0.14 0.01
Matches are distributed among these distances:
83 3 0.02
84 168 0.98
ACGTcount: A:0.31, C:0.23, G:0.20, T:0.25
Consensus pattern (84 bp):
TAGCATAACTCAAGGCTAGAAGGGTTATCTGCCAACAAAAGACCTTCGAGTTCGACTACGCTCAG
CTCCAAGGCACATCATTTG
Found at i:10675 original size:70 final size:69
Alignment explanation
Indices: 10552--10685 Score: 171
Period size: 70 Copynumber: 1.9 Consensus size: 69
10542 AATACCTTTG
* * * * * * *
10552 AGTTCGATTACATTCAGCTCAACGGCACATCATTTGTAGTATAGCTCATGGCTATAAGGGTTATC
1 AGTTCGATTACACTCAACTCAACGGCACATCATTTGCAGCATAACTCAAGGCTAGAAGGGTTATC
10617 TGAC
66 TGAC
*
10621 AGTTCGATTACACTCAACTTCGA-GGACACATCATTTGCAGCATAACTCAAGGCTAGAAGGGTTA
1 AGTTCGATTACACTCAAC-TCAACGG-CACATCATTTGCAGCATAACTCAAGGCTAGAAGGGTTA
10685 T
64 T
10686 TTGCCAATAA
Statistics
Matches: 55, Mismatches: 8, Indels: 3
0.83 0.12 0.05
Matches are distributed among these distances:
69 18 0.33
70 37 0.67
ACGTcount: A:0.30, C:0.21, G:0.20, T:0.29
Consensus pattern (69 bp):
AGTTCGATTACACTCAACTCAACGGCACATCATTTGCAGCATAACTCAAGGCTAGAAGGGTTATC
TGAC
Found at i:10927 original size:84 final size:83
Alignment explanation
Indices: 10647--11776 Score: 1072
Period size: 84 Copynumber: 13.6 Consensus size: 83
10637 ACTTCGAGGA
* * *
10647 CACATCATTTGCAGCATAACTCAAGGCTAGAAGGGTTATTTGCCAATAAAAGACCTTTGAGTTCG
1 CACATCATTTGCAGCATAACTCAAGGCTAGAAGGGTTATCTG-CAACAAAAGACCTTCGAGTTCG
* * *
10712 ATTACACTCAGCT-CACGG
65 ACTACGCTCAGCTCCAAGG
* * * *
10730 CACATCATTTGCAGTACAACTCAAGGCTAGAAGGGATATCTGC--C-AAAGACCCTCGAGTTCGA
1 CACATCATTTGCAGCATAACTCAAGGCTAGAAGGGTTATCTGCAACAAAAGACCTTCGAGTTCGA
* * * *
10792 TTACACTCAGCTTCGAGGG
66 CTACGCTCAGC-TCCAAGG
* *
10811 CACATCATTTGTAGCATAACTCAAGGCTAGAAGGGTTATCTGTCAACAAAAGACCTTCGAGTTTG
1 CACATCATTTGCAGCATAACTCAAGGCTAGAAGGGTTATCTG-CAACAAAAGACCTTCGAGTTCG
* * *
10876 ACTATGCTTAGCTCTAAGG
65 ACTACGCTCAGCTCCAAGG
** ** * * * * * *
10895 CACATCAAATGCAATATAACTTAAGGCAAGAAGGGCTATTTACCAACAAAAGACCTTCAAGTTCG
1 CACATCATTTGCAGCATAACTCAAGGCTAGAAGGGTTATCT-GCAACAAAAGACCTTCGAGTTCG
10960 ACTACGCTCAGCTCCAAGG
65 ACTACGCTCAGCTCCAAGG
* * * * *
10979 CACATCATTTGTAGTACAACTCAAGGCTAGAAGGGATATCTGC--C-AAAGACCCTCGAGTTCGA
1 CACATCATTTGCAGCATAACTCAAGGCTAGAAGGGTTATCTGCAACAAAAGACCTTCGAGTTCGA
* * * *
11041 TTACACTCAGCTTCGAGGG
66 CTACGCTCAGC-TCCAAGG
11060 CACATCATTTGCAGCATAACTCAAGGCTAGAAGGGTTATCTGCCAACAAAAGACCTTCGAGTTCG
1 CACATCATTTGCAGCATAACTCAAGGCTAGAAGGGTTATCTG-CAACAAAAGACCTTCGAGTTCG
11125 ACTACGCTCAGCTCCAAGG
65 ACTACGCTCAGCTCCAAGG
** * * *
11144 CACATCATTTGCAATATAGCTCAAGGCAAGAAGGGTTATTTGCCAACAAAAGACCTTCGAGTTCG
1 CACATCATTTGCAGCATAACTCAAGGCTAGAAGGGTTATCTG-CAACAAAAGACCTTCGAGTTCG
*
11209 ACTACGCTCAGCTCTAAGG
65 ACTACGCTCAGCTCCAAGG
* * * * * *
11228 CACATCATTTGCAGCATAGCTTAAGTCGAGAAGGGCTATCTGC--C-AAAGACCTTCTAGTTCGA
1 CACATCATTTGCAGCATAACTCAAGGCTAGAAGGGTTATCTGCAACAAAAGACCTTCGAGTTCGA
* ** *
11290 TTATACTCAGCTCAAAGG
66 CTACGCTCAGCTCCAAGG
* * *
11308 TACCATCATTTGCAGCATAACTCAAGGCGAGAAGGGTTATCTGC--C-AAAGACCTTCGAGTTCA
1 CA-CATCATTTGCAGCATAACTCAAGGCTAGAAGGGTTATCTGCAACAAAAGACCTTCGAGTTCG
* * *
11370 ATTACACTCAGCTCAAAGG
65 ACTACGCTCAGCTCCAAGG
*
11389 CACCATCATTTGCAGCATAACTCAAGGCTAGAAGGGTTACCTGCCAACAAAAGACCTTCGAGTTC
1 CA-CATCATTTGCAGCATAACTCAAGGCTAGAAGGGTTATCTG-CAACAAAAGACCTTCGAGTTC
*
11454 GACTACGCTCAGCTGCAAGG
64 GACTACGCTCAGCTCCAAGG
* * * * * * * * *
11474 CACATCATTTACAGCATAGCTTAAGTCGAGAAGGGCTATCTGCTAACTAAATACC-TCTGAGTTT
1 CACATCATTTGCAGCATAACTCAAGGCTAGAAGGGTTATCTGC-AACAAAAGACCTTC-GAGTTC
*
11538 GA-TGACACTCAGCTCCAAGG
64 GACT-ACGCTCAGCTCCAAGG
* * *
11558 CGCATCATTTACAGCATAACTCAAGGCTAGAAGGGTTATCTGTCAAC-AATGACCTTCGAGTTCG
1 CACATCATTTGCAGCATAACTCAAGGCTAGAAGGGTTATCTG-CAACAAAAGACCTTCGAGTTCG
* * * *
11622 ATTACACTCAGTTCAAAGG
65 ACTACGCTCAGCTCCAAGG
* * * * ** * * * * *
11641 CATATTATTTGCAGCATAGCTTAAATCGAGAAGGGCTATCTGTCATC-AAAGACCTTCAAGTTTG
1 CACATCATTTGCAGCATAACTCAAGGCTAGAAGGGTTATCTG-CAACAAAAGACCTTCGAGTTCG
* *
11705 ATTACACTCAGCT-CAGAGG
65 ACTACGCTCAGCTCCA-AGG
* * * * * * *
11724 GAAATCAAATTTACAGCATAGCTCAAAGCAAGAAGGGTTATCTGTCAATAAAA
1 CACATC--ATTTGCAGCATAACTCAAGGCTAGAAGGGTTATCTG-CAACAAAA
11777 TTGTTGAGTT
Statistics
Matches: 876, Mismatches: 144, Indels: 51
0.82 0.13 0.05
Matches are distributed among these distances:
79 27 0.03
80 58 0.07
81 197 0.22
82 5 0.01
83 138 0.16
84 331 0.38
85 117 0.13
86 3 0.00
ACGTcount: A:0.32, C:0.24, G:0.20, T:0.24
Consensus pattern (83 bp):
CACATCATTTGCAGCATAACTCAAGGCTAGAAGGGTTATCTGCAACAAAAGACCTTCGAGTTCGA
CTACGCTCAGCTCCAAGG
Found at i:11084 original size:249 final size:247
Alignment explanation
Indices: 10647--11653 Score: 1268
Period size: 249 Copynumber: 4.1 Consensus size: 247
10637 ACTTCGAGGA
** * * *
10647 CACATCATTTGCAGCATAACTCAAGGCTAGAAGGGTTATTTGCCAATAAAAGACCTTTGAGTTCG
1 CACATCATTTGCAATATAACTCAAGGCAAGAAGGGTTATTTGCCAACAAAAGACCTTCGAGTTCG
* * * * *
10712 ATTACACTCAGCT-CACGGCACATCATTTGCAGTACAACTCAAGGCTAGAAGGGATATCTGCCAA
66 ACTACGCTCAGCTCCAAGGCACATCATTTGCAGCACAACTCAAGGCGAGAAGGGATATCTGCCAA
* *
10776 AGACCCTCGAGTTCGATTACACTCAGCTTCGAGGGCACATCATTTGTAGCATAACTCAAGGCTAG
131 AGACCCTCGAGTTCGATTACACTCAGC-TCGAAGGCACATCATTTGCAGCATAACTCAAGGCTAG
* * * *
10841 AAGGGTTATCTGTCAACAAAAGACCTTCGAGTTTGACTATGCTTAGCTCTAAGG
195 AAGGGTTATCTGTCAAC-AAAGACCTTCGAGTTCGACTACGCTCAGCTCAAAGG
** * * * *
10895 CACATCAAATGCAATATAACTTAAGGCAAGAAGGGCTATTTACCAACAAAAGACCTTCAAGTTCG
1 CACATCATTTGCAATATAACTCAAGGCAAGAAGGGTTATTTGCCAACAAAAGACCTTCGAGTTCG
* * *
10960 ACTACGCTCAGCTCCAAGGCACATCATTTGTAGTACAACTCAAGGCTAGAAGGGATATCTGCCAA
66 ACTACGCTCAGCTCCAAGGCACATCATTTGCAGCACAACTCAAGGCGAGAAGGGATATCTGCCAA
*
11025 AGACCCTCGAGTTCGATTACACTCAGCTTCGAGGGCACATCATTTGCAGCATAACTCAAGGCTAG
131 AGACCCTCGAGTTCGATTACACTCAGC-TCGAAGGCACATCATTTGCAGCATAACTCAAGGCTAG
* *
11090 AAGGGTTATCTGCCAACAAAAGACCTTCGAGTTCGACTACGCTCAGCTCCAAGG
195 AAGGGTTATCTGTCAAC-AAAGACCTTCGAGTTCGACTACGCTCAGCTCAAAGG
*
11144 CACATCATTTGCAATATAGCTCAAGGCAAGAAGGGTTATTTGCCAACAAAAGACCTTCGAGTTCG
1 CACATCATTTGCAATATAACTCAAGGCAAGAAGGGTTATTTGCCAACAAAAGACCTTCGAGTTCG
* * * * * *
11209 ACTACGCTCAGCTCTAAGGCACATCATTTGCAGCATAGCTTAAGTCGAGAAGGGCTATCTGCCAA
66 ACTACGCTCAGCTCCAAGGCACATCATTTGCAGCACAACTCAAGGCGAGAAGGGATATCTGCCAA
* * * * * *
11274 AGACCTTCTAGTTCGATTATACTCAGCTCAAAGGTACCATCATTTGCAGCATAACTCAAGGCGAG
131 AGACCCTCGAGTTCGATTACACTCAGCTCGAAGGCA-CATCATTTGCAGCATAACTCAAGGCTAG
* * *
11339 AAGGGTTATCTG-C--CAAAGACCTTCGAGTTCAATTACACTCAGCTCAAAGG
195 AAGGGTTATCTGTCAACAAAGACCTTCGAGTTCGACTACGCTCAGCTCAAAGG
** * **
11389 CACCATCATTTGCAGCATAACTCAAGGCTAGAAGGGTTACCTGCCAACAAAAGACCTTCGAGTTC
1 CA-CATCATTTGCAATATAACTCAAGGCAAGAAGGGTTATTTGCCAACAAAAGACCTTCGAGTTC
* * * * * * *
11454 GACTACGCTCAGCTGCAAGGCACATCATTTACAGCATAGCTTAAGTCGAGAAGGGCTATCTGCTA
65 GACTACGCTCAGCTCCAAGGCACATCATTTGCAGCACAACTCAAGGCGAGAAGGGATATCTGC--
* * * * * *
11519 ACTAAATA-CCTCTGAGTTTGATGACACTCAGCTCCAAGGCGCATCATTTACAGCATAACTCAAG
128 -C-AAAGACCCTC-GAGTTCGATTACACTCAGCTCGAAGGCACATCATTTGCAGCATAACTCAAG
* * * *
11583 GCTAGAAGGGTTATCTGTCAACAATGACCTTCGAGTTCGATTACACTCAGTTCAAAGG
190 GCTAGAAGGGTTATCTGTCAACAAAGACCTTCGAGTTCGACTACGCTCAGCTCAAAGG
* *
11641 CATATTATTTGCA
1 CACATCATTTGCA
11654 GCATAGCTTA
Statistics
Matches: 675, Mismatches: 73, Indels: 19
0.88 0.10 0.02
Matches are distributed among these distances:
245 34 0.05
246 117 0.17
248 72 0.11
249 381 0.56
250 26 0.04
251 9 0.01
252 36 0.05
ACGTcount: A:0.31, C:0.24, G:0.20, T:0.24
Consensus pattern (247 bp):
CACATCATTTGCAATATAACTCAAGGCAAGAAGGGTTATTTGCCAACAAAAGACCTTCGAGTTCG
ACTACGCTCAGCTCCAAGGCACATCATTTGCAGCACAACTCAAGGCGAGAAGGGATATCTGCCAA
AGACCCTCGAGTTCGATTACACTCAGCTCGAAGGCACATCATTTGCAGCATAACTCAAGGCTAGA
AGGGTTATCTGTCAACAAAGACCTTCGAGTTCGACTACGCTCAGCTCAAAGG
Found at i:11354 original size:330 final size:328
Alignment explanation
Indices: 10337--11776 Score: 1466
Period size: 330 Copynumber: 4.4 Consensus size: 328
10327 AATTATTAAT
* *
10337 AGCATAACTCAAGGCTAGAAGGGTTATCTGCCAACAAAAGACCTTCGAGTTCGACTACGCTCAGC
1 AGCATAACTCAAGGCTAGAAGGGTTATCTG-C--C-AAAGACCTTCGAGTTCGATTACACTCAGC
* * * * * * *
10402 TCCAAGGCACATCATTTGTAACATAGCTCAAGGCAAGAAGGGCTATTTGCCAACAAAAGACCTTC
62 TCGAAGGCACATCATTTGCAGCATAACTCAAGGCTAGAAGGGTTATCTGCCAACAAAAGACCTTC
* *
10467 GAGTTTGACTATGCTCAGCTCCAAGGCACATCATTTGCAGCATAACTCAAGGCTAGAAGGGTTAT
127 GAGTTCGACTACGCTCAGCTCCAAGGCACATCATTTGCAGCATAACTCAAGGCTAGAAGGGTTAT
* * * * * * * *
10532 CTACCAACAAAATACCTTTGAGTTCGATTACATTCAGCTC-AACGGCACATCATTTGTAGTATAG
192 CTGCCAACAAAAGACCTTCGAGTTCGACTACACTCAGCTCTAA-GGCACATCATTTGCAGCATAA
* * * * *
10596 CTCATGGCTATAAGGGTTATCT-------GA----CAGTTCGATTACACTCAACTTC-GAGGACA
256 CTCAAGGCTAGAAGGGCTATCTGCACAAAGACCTTCAGTTCGATTACACTCAGC-TCAAAGG-CA
10649 CATCATTTGC
319 CATCATTTGC
* *
10659 AGCATAACTCAAGGCTAGAAGGGTTATTTGCCAATAAAAGACCTTTGAGTTCGATTACACTCAGC
1 AGCATAACTCAAGGCTAGAAGGGTTATCTGCC----AAAGACCTTCGAGTTCGATTACACTCAGC
* * * * *
10724 TC-ACGGCACATCATTTGCAGTACAACTCAAGGCTAGAAGGGATATCTG-C--C-AAAGACCCTC
62 TCGAAGGCACATCATTTGCAGCATAACTCAAGGCTAGAAGGGTTATCTGCCAACAAAAGACCTTC
* * * * *
10784 GAGTTCGATTACACTCAGCTTCGAGGGCACATCATTTGTAGCATAACTCAAGGCTAGAAGGGTTA
127 GAGTTCGACTACGCTCAGC-TCCAAGGCACATCATTTGCAGCATAACTCAAGGCTAGAAGGGTTA
* * ** * ** **
10849 TCTGTCAACAAAAGACCTTCGAGTTTGACTATGCTTAGCTCTAAGGCACATCAAATGCAATATAA
191 TCTGCCAACAAAAGACCTTCGAGTTCGACTACACTCAGCTCTAAGGCACATCATTTGCAGCATAA
* * * * * * *
10914 CTTAAGGCAAGAAGGGCTATTTACCAACAAAAGACCTTCAAGTTCGACTACGCTCAGCTCCAAGG
256 CTCAAGGCTAGAAGGGCTATCT-GC-AC-AAAGACCTTC-AGTTCGATTACACTCAGCTCAAAGG
*
10979 CACATCATTTGT
317 CACATCATTTGC
* * * *
10991 AGTACAACTCAAGGCTAGAAGGGATATCTGCCAAAGACCCTCGAGTTCGATTACACTCAGCTTCG
1 AGCATAACTCAAGGCTAGAAGGGTTATCTGCCAAAGACCTTCGAGTTCGATTACACTCAGC-TCG
*
11056 AGGGCACATCATTTGCAGCATAACTCAAGGCTAGAAGGGTTATCTGCCAACAAAAGACCTTCGAG
65 AAGGCACATCATTTGCAGCATAACTCAAGGCTAGAAGGGTTATCTGCCAACAAAAGACCTTCGAG
** * * *
11121 TTCGACTACGCTCAGCTCCAAGGCACATCATTTGCAATATAGCTCAAGGCAAGAAGGGTTATTTG
130 TTCGACTACGCTCAGCTCCAAGGCACATCATTTGCAGCATAACTCAAGGCTAGAAGGGTTATCTG
* * *
11186 CCAACAAAAGACCTTCGAGTTCGACTACGCTCAGCTCTAAGGCACATCATTTGCAGCATAGCTTA
195 CCAACAAAAGACCTTCGAGTTCGACTACACTCAGCTCTAAGGCACATCATTTGCAGCATAACTCA
* * * *
11251 AGTCGAGAAGGGCTATCTGC-CAAAGACCTTCTAGTTCGATTATACTCAGCTCAAAGGTACCATC
260 AGGCTAGAAGGGCTATCTGCACAAAGACCTTC-AGTTCGATTACACTCAGCTCAAAGGCA-CATC
11315 ATTTGC
323 ATTTGC
* * *
11321 AGCATAACTCAAGGCGAGAAGGGTTATCTGCCAAAGACCTTCGAGTTCAATTACACTCAGCTCAA
1 AGCATAACTCAAGGCTAGAAGGGTTATCTGCCAAAGACCTTCGAGTTCGATTACACTCAGCTCGA
*
11386 AGGCACCATCATTTGCAGCATAACTCAAGGCTAGAAGGGTTACCTGCCAACAAAAGACCTTCGAG
66 AGGCA-CATCATTTGCAGCATAACTCAAGGCTAGAAGGGTTATCTGCCAACAAAAGACCTTCGAG
* * * * * * *
11451 TTCGACTACGCTCAGCTGCAAGGCACATCATTTACAGCATAGCTTAAGTCGAGAAGGGCTATCTG
130 TTCGACTACGCTCAGCTCCAAGGCACATCATTTGCAGCATAACTCAAGGCTAGAAGGGTTATCTG
* * * * * * *
11516 CTAACTAAATACC-TCTGAGTTTGA-TGACACTCAGCTCCAAGGCGCATCATTTACAGCATAACT
195 CCAACAAAAGACCTTC-GAGTTCGACT-ACACTCAGCTCTAAGGCACATCATTTGCAGCATAACT
* * * *
11579 CAAGGCTAGAAGGGTTATCTGTCAACAATGACCTTCGAGTTCGATTACACTCAGTTCAAAGGCAT
258 CAAGGCTAGAAGGGCTATCTG-C-ACAAAGACCTTC-AGTTCGATTACACTCAGCTCAAAGGCAC
*
11644 ATTATTTGC
320 ATCATTTGC
* * ** * * * *
11653 AGCATAGCTTAAATCGAGAAGGGCTATCTGTCATCAAAGACCTTCAAGTTTGATTACACTCAGCT
1 AGCATAACTCAAGGCTAGAAGGGTTATCTG-C--CAAAGACCTTCGAGTTCGATTACACTCAGCT
* * * * * * * *
11718 C-AGAGGGAAATCAAATTTACAGCATAGCTCAAAGCAAGAAGGGTTATCTGTCAATAAAA
63 CGA-AGGCACATC--ATTTGCAGCATAACTCAAGGCTAGAAGGGTTATCTGCCAACAAAA
11777 TTGTTGAGTT
Statistics
Matches: 935, Mismatches: 143, Indels: 66
0.82 0.12 0.06
Matches are distributed among these distances:
317 24 0.03
318 106 0.11
319 3 0.00
320 1 0.00
321 38 0.04
322 58 0.06
328 29 0.03
329 44 0.05
330 287 0.31
331 2 0.00
332 76 0.08
333 166 0.18
334 30 0.03
335 33 0.04
336 38 0.04
ACGTcount: A:0.32, C:0.24, G:0.20, T:0.25
Consensus pattern (328 bp):
AGCATAACTCAAGGCTAGAAGGGTTATCTGCCAAAGACCTTCGAGTTCGATTACACTCAGCTCGA
AGGCACATCATTTGCAGCATAACTCAAGGCTAGAAGGGTTATCTGCCAACAAAAGACCTTCGAGT
TCGACTACGCTCAGCTCCAAGGCACATCATTTGCAGCATAACTCAAGGCTAGAAGGGTTATCTGC
CAACAAAAGACCTTCGAGTTCGACTACACTCAGCTCTAAGGCACATCATTTGCAGCATAACTCAA
GGCTAGAAGGGCTATCTGCACAAAGACCTTCAGTTCGATTACACTCAGCTCAAAGGCACATCATT
TGC
Found at i:12343 original size:36 final size:35
Alignment explanation
Indices: 12291--12586 Score: 260
Period size: 36 Copynumber: 8.4 Consensus size: 35
12281 TGAAAATACG
*
12291 TATATAATATATAGTTTTTAAAATCATTTTCAAAAC
1 TATATAATATATAGTTTTTAAAA-CATTTTGAAAAC
12327 TTATATAAT-TATAGTTTTTTAAAAACATTTTTGAAAAC
1 -TATATAATATATAG-TTTTT-AAAACA-TTTTGAAAAC
* ** *
12365 ATTTATATATTATATAGTTTAAAAAACATTTT-TAAA-
1 ---TATATAATATATAGTTTTTAAAACATTTTGAAAAC
*
12401 -ATAT-ATA-AT--TTTTAAAAACATTTTTGAAAAC
1 TATATAATATATAGTTTTTAAAACA-TTTTGAAAAC
*
12432 -ATATAATATATAATTTTTCAAAACAATTTTGAAAAC
1 TATATAATATATAGTTTTT-AAAAC-ATTTTGAAAAC
*
12468 -ATATAA-ATATAAGTTTTGAAAACATTTTCGAAAAC
1 TATATAATATAT-AGTTTTTAAAACATTTT-GAAAAC
12503 -ATAT-ATATATAGTTTTTAAAACATTTTGAAAAC
1 TATATAATATATAGTTTTTAAAACATTTTGAAAAC
*
12536 ATATATAATATATAGTTTTTAAAAATATTTTTGAAAA-
1 -TATATAATATATAGTTTTT-AAAACA-TTTTGAAAAC
12573 TATATATATATATA
1 TATATA-ATATATA
12587 TATATATATA
Statistics
Matches: 222, Mismatches: 13, Indels: 48
0.78 0.05 0.17
Matches are distributed among these distances:
28 10 0.05
29 4 0.02
30 5 0.02
31 6 0.03
32 7 0.03
33 8 0.04
34 22 0.10
35 31 0.14
36 50 0.23
37 31 0.14
38 26 0.12
39 6 0.03
40 11 0.05
41 5 0.02
ACGTcount: A:0.47, C:0.05, G:0.04, T:0.43
Consensus pattern (35 bp):
TATATAATATATAGTTTTTAAAACATTTTGAAAAC
Found at i:12405 original size:27 final size:27
Alignment explanation
Indices: 12360--12436 Score: 82
Period size: 27 Copynumber: 2.8 Consensus size: 27
12350 AACATTTTTG
* * *
12360 AAAACATTTATATATTATATAGTTTAA
1 AAAACATTTTTAAAATATATAGTTTAA
* *
12387 AAAACATTTTTAAAATATATAATTTTTA
1 AAAACATTTTTAAAATATAT-AGTTTAA
*
12415 AAAACATTTTTGAAAACATATA
1 AAAACATTTTT-AAAATATATA
12437 ATATATAATT
Statistics
Matches: 42, Mismatches: 6, Indels: 3
0.82 0.12 0.06
Matches are distributed among these distances:
27 17 0.40
28 17 0.40
29 8 0.19
ACGTcount: A:0.51, C:0.05, G:0.03, T:0.42
Consensus pattern (27 bp):
AAAACATTTTTAAAATATATAGTTTAA
Found at i:12423 original size:104 final size:103
Alignment explanation
Indices: 12296--12590 Score: 323
Period size: 104 Copynumber: 2.8 Consensus size: 103
12286 ATACGTATAT
* * *
12296 AATATATAGTTTTTAAAATCATTTTCAAAACTTATATAAT-TATAGTTTTTTAAAAACATTTTTG
1 AATATATAATTTTTAAAAACATTTTGAAAAC-TATATAATATATAG-TTTTTAAAAACATTTTTG
*
12360 AAAACATTTATATATTATATAGTTTAAAAAACATTTT-TAA
64 AAAACA-TTATATATTATATAGTTTAAAAAACATTTTCAAA
* * *
12400 AATATATAATTTTTAAAAACATTTTTGAAAAC-ATATAATATATAATTTTTCAAAACAATTTTGA
1 AATATATAATTTTTAAAAACA-TTTTGAAAACTATATAATATATAGTTTTTAAAAACATTTTTGA
* **
12464 AAACA-TATA-AATATA-AGTTTTGAAAACATTTTCGAAA
65 AAACATTATATATTATATAGTTTAAAAAACATTTTC-AAA
* *
12501 ACATATATATATAGTTTTTAAAACATTTTGAAAACATATATAATATATAGTTTTTAAAAATATTT
1 A-ATATATA-AT--TTTTAAAAACATTTTGAAAAC-TATATAATATATAGTTTTTAAAAACATTT
*
12566 TTGAAAATATATATATATATATATA
61 TTGAAAACAT-TATATAT-TATATA
12591 TATATAATTT
Statistics
Matches: 159, Mismatches: 17, Indels: 23
0.80 0.09 0.12
Matches are distributed among these distances:
99 15 0.09
100 5 0.03
101 7 0.04
102 7 0.04
103 31 0.19
104 33 0.21
105 19 0.12
106 32 0.20
108 4 0.03
109 1 0.01
110 4 0.03
111 1 0.01
ACGTcount: A:0.47, C:0.05, G:0.04, T:0.43
Consensus pattern (103 bp):
AATATATAATTTTTAAAAACATTTTGAAAACTATATAATATATAGTTTTTAAAAACATTTTTGAA
AACATTATATATTATATAGTTTAAAAAACATTTTCAAA
Found at i:12502 original size:71 final size:70
Alignment explanation
Indices: 12403--12586 Score: 255
Period size: 71 Copynumber: 2.6 Consensus size: 70
12393 TTTTTAAAAT
*
12403 ATATAATTTTTAAAAACATTTTTGAAAACATATAATATATAATTTTTCAAAACAATTTTGAAAAC
1 ATATAAGTTTTAAAAACATTTTTGAAAACATATAATATATAATTTTT-AAAAC-ATTTTGAAAAC
12468 ATATA-A
64 ATATATA
* * *
12474 ATATAAGTTTTGAAAACATTTTCGAAAACATAT-ATATATAGTTTTTAAAACATTTTGAAAACAT
1 ATATAAGTTTTAAAAACATTTTTGAAAACATATAATATATAATTTTTAAAACATTTTGAAAACAT
12538 ATATA
66 ATATA
* *
12543 ATATATAGTTTTTAAAAATATTTTTGAAAATATATATATATATA
1 ATATA-AG-TTTTAAAAACATTTTTGAAAACATATA-ATATATA
12587 TATATATATA
Statistics
Matches: 100, Mismatches: 8, Indels: 8
0.86 0.07 0.07
Matches are distributed among these distances:
68 16 0.16
69 11 0.11
70 14 0.14
71 52 0.52
73 7 0.07
ACGTcount: A:0.48, C:0.05, G:0.05, T:0.41
Consensus pattern (70 bp):
ATATAAGTTTTAAAAACATTTTTGAAAACATATAATATATAATTTTTAAAACATTTTGAAAACAT
ATATA
Found at i:12568 original size:83 final size:81
Alignment explanation
Indices: 12499--12652 Score: 193
Period size: 83 Copynumber: 1.9 Consensus size: 81
12489 ACATTTTCGA
*
12499 AAACATATATATATAGTTTTT-AAAACATTTTGAAAACATATATAATATATAGTTTTTAAAAATA
1 AAACATATATATATAATTTTTGAAAACATTTT-AAAACATATATAATATATAG--TTTAAAAATA
*
12563 TTTTTGAAAATATATATAT
63 TTTTTGAAAACATATATAT
* * * * * * *
12582 ATATATATATATATAATTTTTGAAAACATTTTTAAATATGTATAATATATAGTTTGAAAATGTTT
1 AAACATATATATATAATTTTTGAAAACATTTTAAAACATATATAATATATAGTTTAAAAATATTT
12647 TTGAAA
66 TTGAAA
12653 TTTTAAAAAC
Statistics
Matches: 62, Mismatches: 8, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
81 17 0.27
83 35 0.56
84 10 0.16
ACGTcount: A:0.46, C:0.03, G:0.06, T:0.45
Consensus pattern (81 bp):
AAACATATATATATAATTTTTGAAAACATTTTAAAACATATATAATATATAGTTTAAAAATATTT
TTGAAAACATATATAT
Found at i:12579 original size:2 final size:2
Alignment explanation
Indices: 12572--12596 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
12562 ATTTTTGAAA
12572 AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT A
12597 ATTTTTGAAA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:12631 original size:46 final size:46
Alignment explanation
Indices: 12536--12632 Score: 128
Period size: 47 Copynumber: 2.2 Consensus size: 46
12526 TTTTGAAAAC
* *
12536 ATATATAATATATAGTTTTTAAAAATATTTTTGAAAATATATATAT
1 ATATATAATATATAATTTTTAAAAACATTTTTGAAAATATATATAT
* *
12582 ATATATATATATATAATTTTTGAAAACATTTTT--AAATATGTATA-
1 ATATATA-ATATATAATTTTTAAAAACATTTTTGAAAATATATATAT
12626 ATATATA
1 ATATATA
12633 GTTTGAAAAT
Statistics
Matches: 46, Mismatches: 4, Indels: 4
0.85 0.07 0.07
Matches are distributed among these distances:
44 7 0.15
45 10 0.22
46 7 0.15
47 22 0.48
ACGTcount: A:0.47, C:0.01, G:0.04, T:0.47
Consensus pattern (46 bp):
ATATATAATATATAATTTTTAAAAACATTTTTGAAAATATATATAT
Found at i:13597 original size:14 final size:14
Alignment explanation
Indices: 13580--13609 Score: 60
Period size: 14 Copynumber: 2.1 Consensus size: 14
13570 AGTGACGGTG
13580 CGGTGGAGATAGGC
1 CGGTGGAGATAGGC
13594 CGGTGGAGATAGGC
1 CGGTGGAGATAGGC
13608 CG
1 CG
13610 ATGAAGATGA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.20, C:0.17, G:0.50, T:0.13
Consensus pattern (14 bp):
CGGTGGAGATAGGC
Found at i:13975 original size:17 final size:17
Alignment explanation
Indices: 13953--13991 Score: 60
Period size: 17 Copynumber: 2.3 Consensus size: 17
13943 AATTTAACTT
*
13953 TTTTTATTTATTATTTG
1 TTTTTATTTATTATTTA
*
13970 TTTTTATTTATTTTTTA
1 TTTTTATTTATTATTTA
13987 TTTTT
1 TTTTT
13992 CTTATGATTT
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
17 20 1.00
ACGTcount: A:0.15, C:0.00, G:0.03, T:0.82
Consensus pattern (17 bp):
TTTTTATTTATTATTTA
Found at i:13979 original size:21 final size:20
Alignment explanation
Indices: 13951--13989 Score: 60
Period size: 21 Copynumber: 1.9 Consensus size: 20
13941 AAAATTTAAC
13951 TTTTTTTATTTATTATTTGT
1 TTTTTTTATTTATTATTTGT
*
13971 TTTTATTTATTTTTTATTT
1 TTTT-TTTATTTATTATTT
13990 TTCTTATGAT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 4 0.24
21 13 0.76
ACGTcount: A:0.15, C:0.00, G:0.03, T:0.82
Consensus pattern (20 bp):
TTTTTTTATTTATTATTTGT
Found at i:14002 original size:28 final size:25
Alignment explanation
Indices: 13952--14019 Score: 64
Period size: 28 Copynumber: 2.5 Consensus size: 25
13942 AAATTTAACT
*
13952 TTTTTTATTTATTATTTGTTTTTATTTA
1 TTTTTTATTT-TTATTTG-ATTT-TTTA
*
13980 TTTTTTATTTTTCTTATGATTTTTTA
1 TTTTTTATTTTTATT-TGATTTTTTA
14006 TTCTTTTAATTTTT
1 TT-TTTT-ATTTTT
14020 TCATTATTTT
Statistics
Matches: 35, Mismatches: 2, Indels: 6
0.81 0.05 0.14
Matches are distributed among these distances:
26 6 0.17
27 11 0.31
28 18 0.51
ACGTcount: A:0.16, C:0.03, G:0.03, T:0.78
Consensus pattern (25 bp):
TTTTTTATTTTTATTTGATTTTTTA
Found at i:14012 original size:10 final size:10
Alignment explanation
Indices: 13951--14032 Score: 52
Period size: 10 Copynumber: 8.6 Consensus size: 10
13941 AAAATTTAAC
13951 TTTTT-TTAT
1 TTTTTATTAT
*
13960 TTATTATT-T
1 TTTTTATTAT
13969 GTTTTTATTTAT
1 -TTTTTA-TTAT
13981 TTTTTATT-T
1 TTTTTATTAT
* *
13990 TTCTTATGAT
1 TTTTTATTAT
14000 TTTTTA-T-T
1 TTTTTATTAT
*
14008 CTTTTA--AT
1 TTTTTATTAT
14016 TTTTTCATTAT
1 TTTTT-ATTAT
14027 TTTTTA
1 TTTTTA
14033 CTTAATTTAA
Statistics
Matches: 56, Mismatches: 8, Indels: 17
0.69 0.10 0.21
Matches are distributed among these distances:
8 11 0.20
9 13 0.23
10 16 0.29
11 15 0.27
12 1 0.02
ACGTcount: A:0.17, C:0.04, G:0.02, T:0.77
Consensus pattern (10 bp):
TTTTTATTAT
Found at i:14029 original size:17 final size:16
Alignment explanation
Indices: 13945--14029 Score: 52
Period size: 16 Copynumber: 5.2 Consensus size: 16
13935 TTCCCCAAAA
*
13945 TTTAACTTTTT-TTAT
1 TTTAATTTTTTATTAT
*
13960 TTATTATTTGTTT-TTA-
1 TT-TAATTT-TTTATTAT
*
13976 TTT-ATTTTTTATTTT
1 TTTAATTTTTTATTAT
*
13991 TCTTATGATTTTTTATTCT
1 T-TTA--ATTTTTTATTAT
14010 TTTAATTTTTTCATTAT
1 TTTAATTTTTT-ATTAT
14027 TTT
1 TTT
14030 TTACTTAATT
Statistics
Matches: 56, Mismatches: 5, Indels: 16
0.73 0.06 0.21
Matches are distributed among these distances:
13 3 0.05
14 6 0.11
15 4 0.07
16 15 0.27
17 13 0.23
18 3 0.05
19 12 0.21
ACGTcount: A:0.18, C:0.05, G:0.02, T:0.75
Consensus pattern (16 bp):
TTTAATTTTTTATTAT
Found at i:14148 original size:25 final size:24
Alignment explanation
Indices: 14102--14157 Score: 62
Period size: 25 Copynumber: 2.3 Consensus size: 24
14092 TTGGTTTTCC
14102 TTTTTATTTAATGTTTTTTCTTCTA
1 TTTTTATTTAATGTTTTTTCTTC-A
*
14127 TTTTTATTT-AT-TTATTTATCTTCC
1 TTTTTATTTAATGTT-TTT-TCTTCA
14151 TTTTTAT
1 TTTTTAT
14158 ATCTTTTTTT
Statistics
Matches: 28, Mismatches: 1, Indels: 5
0.82 0.03 0.15
Matches are distributed among these distances:
23 2 0.07
24 12 0.43
25 14 0.50
ACGTcount: A:0.16, C:0.09, G:0.02, T:0.73
Consensus pattern (24 bp):
TTTTTATTTAATGTTTTTTCTTCA
Found at i:16951 original size:3 final size:3
Alignment explanation
Indices: 16940--17015 Score: 88
Period size: 3 Copynumber: 25.7 Consensus size: 3
16930 TTTTATTTTT
*
16940 TTA TT- TTA TTA TTA TTA TTA TTTA TTA TTA ATA -TA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA -TTA TTA TTA TTA TTA TTA TTA TTA
16984 TTA CTTA -TA TTA TTA -TA TATA TTA TTA TTA TT
1 TTA -TTA TTA TTA TTA TTA T-TA TTA TTA TTA TT
17016 TAAATAAATA
Statistics
Matches: 65, Mismatches: 1, Indels: 14
0.81 0.01 0.17
Matches are distributed among these distances:
2 8 0.12
3 48 0.74
4 9 0.14
ACGTcount: A:0.34, C:0.01, G:0.00, T:0.64
Consensus pattern (3 bp):
TTA
Found at i:16951 original size:16 final size:17
Alignment explanation
Indices: 16927--17016 Score: 87
Period size: 18 Copynumber: 5.2 Consensus size: 17
16917 AGACACTAGT
* *
16927 TTTTTTTATT-TTTTTA
1 TTTTATTATTATTATTA
16943 TTTTATTATTATTATTA
1 TTTTATTATTATTATTA
16960 -TTTATTATTAATATATTA
1 TTTTATTATT-AT-TATTA
16978 TTATTATTACTTA-TATTA
1 TT-TTATTA-TTATTATTA
*
16996 TTATATATATTATTATTA
1 TTTTAT-TATTATTATTA
17014 TTT
1 TTT
17017 AAATAAATAT
Statistics
Matches: 62, Mismatches: 4, Indels: 14
0.77 0.05 0.17
Matches are distributed among these distances:
16 18 0.29
17 13 0.21
18 21 0.34
19 1 0.02
20 7 0.11
21 2 0.03
ACGTcount: A:0.30, C:0.01, G:0.00, T:0.69
Consensus pattern (17 bp):
TTTTATTATTATTATTA
Found at i:16984 original size:27 final size:30
Alignment explanation
Indices: 16946--17015 Score: 119
Period size: 30 Copynumber: 2.4 Consensus size: 30
16936 TTTTTTATTT
16946 TATTATTATTATTA-TT-TATTATTA-ATA
1 TATTATTATTATTACTTATATTATTATATA
16973 TATTATTATTATTACTTATATTATTATATA
1 TATTATTATTATTACTTATATTATTATATA
17003 TATTATTATTATT
1 TATTATTATTATT
17016 TAAATAAATA
Statistics
Matches: 40, Mismatches: 0, Indels: 3
0.93 0.00 0.07
Matches are distributed among these distances:
27 14 0.35
28 2 0.05
29 8 0.20
30 16 0.40
ACGTcount: A:0.36, C:0.01, G:0.00, T:0.63
Consensus pattern (30 bp):
TATTATTATTATTACTTATATTATTATATA
Found at i:17028 original size:30 final size:29
Alignment explanation
Indices: 16946--17028 Score: 82
Period size: 30 Copynumber: 2.9 Consensus size: 29
16936 TTTTTTATTT
* *
16946 TATTATTATTATT--ATTTATTATTAATA
1 TATTATTATTATTAAATATAATATTAATA
** *
16973 TATTATTATTATTACTTATATTATTATATA
1 TATTATTATTATTAAATATAATATTA-ATA
17003 TATTATTATTATTTAAATA-AATATTA
1 TATTATTATTA-TTAAATATAATATTA
17029 CAAGCCCAGA
Statistics
Matches: 47, Mismatches: 5, Indels: 5
0.82 0.09 0.09
Matches are distributed among these distances:
27 13 0.28
29 9 0.19
30 20 0.43
31 5 0.11
ACGTcount: A:0.40, C:0.01, G:0.00, T:0.59
Consensus pattern (29 bp):
TATTATTATTATTAAATATAATATTAATA
Found at i:18809 original size:18 final size:18
Alignment explanation
Indices: 18777--18813 Score: 58
Period size: 18 Copynumber: 2.1 Consensus size: 18
18767 TTAGGAAAAA
18777 TTATTATATTTTTAATAT
1 TTATTATATTTTTAATAT
18795 TTATT-TATTTATTAATAT
1 TTATTATATTT-TTAATAT
18813 T
1 T
18814 GAAGAAAAGA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
17 5 0.28
18 13 0.72
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (18 bp):
TTATTATATTTTTAATAT
Found at i:21972 original size:14 final size:14
Alignment explanation
Indices: 21955--21985 Score: 53
Period size: 14 Copynumber: 2.2 Consensus size: 14
21945 TATGTTTGTA
*
21955 TTTACATTTTCATT
1 TTTACATTTGCATT
21969 TTTACATTTGCATT
1 TTTACATTTGCATT
21983 TTT
1 TTT
21986 GCATAATTAC
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.19, C:0.13, G:0.03, T:0.65
Consensus pattern (14 bp):
TTTACATTTGCATT
Found at i:29804 original size:164 final size:165
Alignment explanation
Indices: 29533--29842 Score: 568
Period size: 164 Copynumber: 1.9 Consensus size: 165
29523 CAAGAATGAA
*
29533 CATTATCTTGAGATTGGGTCATGTTACCCAATCAACATGTTATTTTAAAAAATAATGAGAAAACG
1 CATTATCTTGAGATTGGGGCATGTTACCCAATCAACATGTTATTTTAAAAAATAATGAGAAAACG
* *
29598 ATTTTCATAGTTTCTCATTTTATCTTTTCTAAAATGAAATTGTTGAAAAGTAAGAAAACGATTTT
66 ATTTCCATAGTTTCTCATATTATCTTTTCTAAAATGAAATTGTTGAAAAGTAAGAAAACGATTTT
29663 CTTAG-TTTTTTACTTAGTAAACTATTTCCAATAG
131 CTTAGTTTTTTTACTTAGTAAACTATTTCCAATAG
*
29697 CATTATCTTGAGATTGGGGCATGTTACCCAATCAACATGTTATTTTGAAAAATAATGAGAAAACG
1 CATTATCTTGAGATTGGGGCATGTTACCCAATCAACATGTTATTTTAAAAAATAATGAGAAAACG
*
29762 ATTTCCATAGTTTCTCATATTATCTTTTCTAAAATGAAATTGTTGAAAAGTAAGAAAATGATTTT
66 ATTTCCATAGTTTCTCATATTATCTTTTCTAAAATGAAATTGTTGAAAAGTAAGAAAACGATTTT
29827 CTTAGTTTTTTTACTT
131 CTTAGTTTTTTTACTT
29843 GAGATTGTTT
Statistics
Matches: 140, Mismatches: 5, Indels: 1
0.96 0.03 0.01
Matches are distributed among these distances:
164 130 0.93
165 10 0.07
ACGTcount: A:0.35, C:0.12, G:0.13, T:0.40
Consensus pattern (165 bp):
CATTATCTTGAGATTGGGGCATGTTACCCAATCAACATGTTATTTTAAAAAATAATGAGAAAACG
ATTTCCATAGTTTCTCATATTATCTTTTCTAAAATGAAATTGTTGAAAAGTAAGAAAACGATTTT
CTTAGTTTTTTTACTTAGTAAACTATTTCCAATAG
Found at i:29918 original size:37 final size:36
Alignment explanation
Indices: 29858--30108 Score: 182
Period size: 37 Copynumber: 6.9 Consensus size: 36
29848 TGTTTTTCTT
* * *
29858 AAAAC-AAATTGTTTCTCGCTTGAGAAAGTTTCCCTC
1 AAAACAAAATT-TATCTCACTTGAGACAGTTTCCCTC
* ** ** *
29894 GAAACAACAATTTATCTCACTTGAGATTGTTTTTCTT
1 AAAACAA-AATTTATCTCACTTGAGACAGTTTCCCTC
* * **
29931 AAAATAAACTTTATCTTGCTTGAGACAGTTTCCCTC
1 AAAACAAAATTTATCTCACTTGAGACAGTTTCCCTC
* * ** ** *
29967 AAAACAACGATTTATCTCACTCGAGATTGTTTTTCTT
1 AAAACAA-AATTTATCTCACTTGAGACAGTTTCCCTC
* *
30004 AAAACAAAATTTGTCTCACTTGAGACAGTTTCACTC
1 AAAACAAAATTTATCTCACTTGAGACAGTTTCCCTC
* * ** *
30040 GAAACAGAAATTTATCTCACTTGAGATTA-TTTTTCTT
1 AAAACA-AAATTTATCTCACTTGAGA-CAGTTTCCCTC
* *
30077 AAAACAAAATTTGTCTCGCTTGAGACAGTTTC
1 AAAACAAAATTTATCTCACTTGAGACAGTTTC
30109 ACTCGAAATA
Statistics
Matches: 161, Mismatches: 48, Indels: 12
0.73 0.22 0.05
Matches are distributed among these distances:
35 1 0.01
36 77 0.48
37 78 0.48
38 5 0.03
ACGTcount: A:0.32, C:0.19, G:0.12, T:0.37
Consensus pattern (36 bp):
AAAACAAAATTTATCTCACTTGAGACAGTTTCCCTC
Found at i:29946 original size:36 final size:36
Alignment explanation
Indices: 29839--30101 Score: 222
Period size: 36 Copynumber: 7.2 Consensus size: 36
29829 TAGTTTTTTT
*
29839 ACTTGAGATTGTTTTTCTTAAAAC-AAATTGTTTCTC
1 ACTTGAGATTGTTTTTCTTAAAACAAAATT-TATCTC
* ** ** **
29875 GCTTGAGAAAGTTTCCCTCGAAACAACAATTTATCTC
1 ACTTGAGATTGTTTTTCTTAAAACAA-AATTTATCTC
* * *
29912 ACTTGAGATTGTTTTTCTTAAAATAAACTTTATCTT
1 ACTTGAGATTGTTTTTCTTAAAACAAAATTTATCTC
* ** ** * *
29948 GCTTGAGACAGTTTCCCTCAAAACAACGATTTATCTC
1 ACTTGAGATTGTTTTTCTTAAAACAA-AATTTATCTC
* *
29985 ACTCGAGATTGTTTTTCTTAAAACAAAATTTGTCTC
1 ACTTGAGATTGTTTTTCTTAAAACAAAATTTATCTC
** ** **
30021 ACTTGAGACAGTTTCACTCGAAACAGAAATTTATCTC
1 ACTTGAGATTGTTTTTCTTAAAACA-AAATTTATCTC
* *
30058 ACTTGAGATTATTTTTCTTAAAACAAAATTTGTCTC
1 ACTTGAGATTGTTTTTCTTAAAACAAAATTTATCTC
*
30094 GCTTGAGA
1 ACTTGAGA
30102 CAGTTTCACT
Statistics
Matches: 169, Mismatches: 54, Indels: 8
0.73 0.23 0.03
Matches are distributed among these distances:
36 87 0.51
37 78 0.46
38 4 0.02
ACGTcount: A:0.31, C:0.18, G:0.12, T:0.38
Consensus pattern (36 bp):
ACTTGAGATTGTTTTTCTTAAAACAAAATTTATCTC
Found at i:29961 original size:73 final size:73
Alignment explanation
Indices: 29839--30116 Score: 407
Period size: 73 Copynumber: 3.8 Consensus size: 73
29829 TAGTTTTTTT
* * *
29839 ACTTGAGATTGTTTTTCTTAAAAC-AAATTGTTTCTCGCTTGAGAAAGTTTCCCTCGAAACAACA
1 ACTTGAGATTGTTTTTCTTAAAACAAAATT-TGTCTCGCTTGAGACAGTTTCACTCGAAACAACA
29903 ATTTATCTC
65 ATTTATCTC
* * * * * * *
29912 ACTTGAGATTGTTTTTCTTAAAATAAACTTTATCTTGCTTGAGACAGTTTCCCTCAAAACAACGA
1 ACTTGAGATTGTTTTTCTTAAAACAAAATTTGTCTCGCTTGAGACAGTTTCACTCGAAACAACAA
29977 TTTATCTC
66 TTTATCTC
* *
29985 ACTCGAGATTGTTTTTCTTAAAACAAAATTTGTCTCACTTGAGACAGTTTCACTCGAAACAGA-A
1 ACTTGAGATTGTTTTTCTTAAAACAAAATTTGTCTCGCTTGAGACAGTTTCACTCGAAACA-ACA
30049 ATTTATCTC
65 ATTTATCTC
*
30058 ACTTGAGATTATTTTTCTTAAAACAAAATTTGTCTCGCTTGAGACAGTTTCACTCGAAA
1 ACTTGAGATTGTTTTTCTTAAAACAAAATTTGTCTCGCTTGAGACAGTTTCACTCGAAA
30117 TAGAAATTTC
Statistics
Matches: 184, Mismatches: 19, Indels: 4
0.89 0.09 0.02
Matches are distributed among these distances:
73 179 0.97
74 5 0.03
ACGTcount: A:0.31, C:0.19, G:0.12, T:0.38
Consensus pattern (73 bp):
ACTTGAGATTGTTTTTCTTAAAACAAAATTTGTCTCGCTTGAGACAGTTTCACTCGAAACAACAA
TTTATCTC
Found at i:30281 original size:3 final size:3
Alignment explanation
Indices: 30267--30356 Score: 125
Period size: 3 Copynumber: 30.7 Consensus size: 3
30257 TTTTTTCATT
*
30267 TTA TTA TT- TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA ATA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
30314 -TA TTA TTA TTA TTA CTTA -TA TTA TTA -TA TATA TTA TTA TTA TT
1 TTA TTA TTA TTA TTA -TTA TTA TTA TTA TTA T-TA TTA TTA TTA TT
30357 TAAATAAATA
Statistics
Matches: 80, Mismatches: 1, Indels: 12
0.86 0.01 0.13
Matches are distributed among these distances:
2 8 0.10
3 66 0.82
4 6 0.08
ACGTcount: A:0.34, C:0.01, G:0.00, T:0.64
Consensus pattern (3 bp):
TTA
Found at i:31716 original size:2 final size:2
Alignment explanation
Indices: 31640--31703 Score: 121
Period size: 2 Copynumber: 32.5 Consensus size: 2
31630 CTATCTCGTG
31640 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
31682 T- TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA T
31704 TATGGTAATA
Statistics
Matches: 61, Mismatches: 0, Indels: 2
0.97 0.00 0.03
Matches are distributed among these distances:
1 1 0.02
2 60 0.98
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:32309 original size:18 final size:18
Alignment explanation
Indices: 32277--32313 Score: 58
Period size: 18 Copynumber: 2.1 Consensus size: 18
32267 TTAGGAAAAA
32277 TTATTATATTTTTAATAT
1 TTATTATATTTTTAATAT
32295 TTATT-TATTTATTAATAT
1 TTATTATATTT-TTAATAT
32313 T
1 T
32314 GAAGAAAAGA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
17 5 0.28
18 13 0.72
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (18 bp):
TTATTATATTTTTAATAT
Found at i:33541 original size:20 final size:20
Alignment explanation
Indices: 33518--33581 Score: 53
Period size: 19 Copynumber: 3.2 Consensus size: 20
33508 TAGTATTTAG
33518 ATAAAT-TTATTAATAATTTT
1 ATAAATATT-TTAATAATTTT
* *
33538 AT-AATCTTTTAATAAATTTA
1 ATAAATATTTTAAT-AATTTT
*
33558 ATAAGTATTTT-ATAATTTT
1 ATAAATATTTTAATAATTTT
*
33577 TTAAA
1 ATAAA
33582 CTTTATTGAC
Statistics
Matches: 35, Mismatches: 6, Indels: 7
0.73 0.12 0.15
Matches are distributed among these distances:
19 16 0.46
20 13 0.37
21 6 0.17
ACGTcount: A:0.44, C:0.02, G:0.02, T:0.53
Consensus pattern (20 bp):
ATAAATATTTTAATAATTTT
Found at i:33551 original size:19 final size:20
Alignment explanation
Indices: 33527--33576 Score: 59
Period size: 20 Copynumber: 2.5 Consensus size: 20
33517 GATAAATTTA
*
33527 TTAATAATTTTATAA-TCTT
1 TTAATAATTTTATAAGTATT
*
33546 TTAATAAATTTAATAAGTATT
1 TTAAT-AATTTTATAAGTATT
33567 TT-ATAATTTT
1 TTAATAATTTT
33577 TTAAACTTTA
Statistics
Matches: 26, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
19 10 0.38
20 11 0.42
21 5 0.19
ACGTcount: A:0.40, C:0.02, G:0.02, T:0.56
Consensus pattern (20 bp):
TTAATAATTTTATAAGTATT
Found at i:33579 original size:31 final size:30
Alignment explanation
Indices: 33494--33580 Score: 95
Period size: 31 Copynumber: 2.8 Consensus size: 30
33484 TTCGATAATA
* *
33494 TAATAATTATTTTAT-AGTATTTAGATAAATT
1 TAATAA-TATTTTATAATTTTTTA-ATAAATT
* *
33525 TATTAATAATTTTATAATCTTTTAATAAATT
1 TAATAAT-ATTTTATAATTTTTTAATAAATT
33556 TAATAAGTATTTTATAATTTTTTAA
1 TAATAA-TATTTTATAATTTTTTAA
33581 ACTTTATTGA
Statistics
Matches: 47, Mismatches: 6, Indels: 6
0.80 0.10 0.10
Matches are distributed among these distances:
30 1 0.02
31 40 0.85
32 6 0.13
ACGTcount: A:0.41, C:0.01, G:0.03, T:0.54
Consensus pattern (30 bp):
TAATAATATTTTATAATTTTTTAATAAATT
Found at i:34340 original size:31 final size:30
Alignment explanation
Indices: 34305--34391 Score: 95
Period size: 31 Copynumber: 2.8 Consensus size: 30
34295 TCAATAAAGT
34305 TTAAAAAATTATAAAATACTTATTAAATTTA
1 TTAAAAAATTATAAAATA-TTATTAAATTTA
* *
34336 TTAAAAGATTATAAAATTATTAATAAATTTA
1 TTAAAAAATTATAAAA-TATTATTAAATTTA
* *
34367 TCT-AAATACTATAAAATAATTATTA
1 T-TAAAAAATTATAAAAT-ATTATTA
34392 TATTATCGAA
Statistics
Matches: 48, Mismatches: 5, Indels: 6
0.81 0.08 0.10
Matches are distributed among these distances:
30 1 0.02
31 44 0.92
32 3 0.06
ACGTcount: A:0.54, C:0.03, G:0.01, T:0.41
Consensus pattern (30 bp):
TTAAAAAATTATAAAATATTATTAAATTTA
Found at i:34367 original size:20 final size:20
Alignment explanation
Indices: 34300--34367 Score: 54
Period size: 19 Copynumber: 3.5 Consensus size: 20
34290 TTTCGTCAAT
*
34300 AAAG-TTTAAAAAATTA-TA
1 AAAGATTTATAAAATTATTA
* * *
34318 AAATACTTATTAAATTTATTA
1 AAAGATTTA-TAAAATTATTA
34339 AAAGA-TTATAAAATTATTA
1 AAAGATTTATAAAATTATTA
34358 ATAA-ATTTAT
1 A-AAGATTTAT
34368 CTAAATACTA
Statistics
Matches: 39, Mismatches: 6, Indels: 8
0.74 0.11 0.15
Matches are distributed among these distances:
18 3 0.08
19 15 0.38
20 15 0.38
21 6 0.15
ACGTcount: A:0.54, C:0.01, G:0.03, T:0.41
Consensus pattern (20 bp):
AAAGATTTATAAAATTATTA
Found at i:40017 original size:62 final size:64
Alignment explanation
Indices: 39912--40031 Score: 181
Period size: 62 Copynumber: 1.9 Consensus size: 64
39902 TCAAAGAAGG
** *
39912 AAATATTAAATTTTAAAAAATGTTACATAAAAAATGTTAAAAGAAAAAATAAAATAAATGAAAA
1 AAATATTAAATTTTAAAAAATGAAAAATAAAAAATGTTAAAAGAAAAAATAAAATAAATGAAAA
* *
39976 AAATATTAAATTTTAGAAAA-GAAAAAT-AAAAATGTTAAAAGAGAAAATAAAATAAA
1 AAATATTAAATTTTAAAAAATGAAAAATAAAAAATGTTAAAAGAAAAAATAAAATAAA
40032 ATAATAAATA
Statistics
Matches: 51, Mismatches: 5, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
62 28 0.55
63 4 0.08
64 19 0.37
ACGTcount: A:0.67, C:0.01, G:0.07, T:0.25
Consensus pattern (64 bp):
AAATATTAAATTTTAAAAAATGAAAAATAAAAAATGTTAAAAGAAAAAATAAAATAAATGAAAA
Found at i:40077 original size:19 final size:18
Alignment explanation
Indices: 40049--40084 Score: 54
Period size: 19 Copynumber: 1.9 Consensus size: 18
40039 ATAAAAGGGA
40049 AATATAGTAAAAATAAAT
1 AATATAGTAAAAATAAAT
*
40067 AATAGTAGTAAAGATAAA
1 AATA-TAGTAAAAATAAA
40085 AAAGGGTTTA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 4 0.25
19 12 0.75
ACGTcount: A:0.64, C:0.00, G:0.11, T:0.25
Consensus pattern (18 bp):
AATATAGTAAAAATAAAT
Found at i:40131 original size:18 final size:18
Alignment explanation
Indices: 40110--40148 Score: 60
Period size: 18 Copynumber: 2.2 Consensus size: 18
40100 GTTGTTTTTA
*
40110 AAATAAAAGATAAGAATT
1 AAATAAAAGAAAAGAATT
*
40128 AAATAAAAGAAAATAATT
1 AAATAAAAGAAAAGAATT
40146 AAA
1 AAA
40149 AAATAATTTA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.72, C:0.00, G:0.08, T:0.21
Consensus pattern (18 bp):
AAATAAAAGAAAAGAATT
Found at i:40850 original size:4 final size:4
Alignment explanation
Indices: 40841--40874 Score: 52
Period size: 4 Copynumber: 8.8 Consensus size: 4
40831 AATAGCAAAA
*
40841 AAAT AAAT AAAT AAAT AAA- AAAG AAAT AAAT AAA
1 AAAT AAAT AAAT AAAT AAAT AAAT AAAT AAAT AAA
40875 ATGACATATT
Statistics
Matches: 28, Mismatches: 1, Indels: 2
0.90 0.03 0.06
Matches are distributed among these distances:
3 3 0.11
4 25 0.89
ACGTcount: A:0.79, C:0.00, G:0.03, T:0.18
Consensus pattern (4 bp):
AAAT
Found at i:40852 original size:19 final size:19
Alignment explanation
Indices: 40838--40874 Score: 65
Period size: 19 Copynumber: 1.9 Consensus size: 19
40828 AAAAATAGCA
40838 AAAAAATAAATAAATAAAT
1 AAAAAATAAATAAATAAAT
*
40857 AAAAAAGAAATAAATAAA
1 AAAAAATAAATAAATAAA
40875 ATGACATATT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.81, C:0.00, G:0.03, T:0.16
Consensus pattern (19 bp):
AAAAAATAAATAAATAAAT
Found at i:40856 original size:23 final size:21
Alignment explanation
Indices: 40816--40875 Score: 68
Period size: 23 Copynumber: 2.7 Consensus size: 21
40806 TTGGACCCCT
*
40816 AAAAAATGAAAT-AAAAATAGCA
1 AAAAAAT-AAATAAAAAATA-AA
40838 AAAAAATAAATAAATAAATAAA
1 AAAAAATAAATAAA-AAATAAA
40860 AAAGAAATAAATAAAA
1 AAA-AAATAAATAAAA
40876 TGACATATTT
Statistics
Matches: 34, Mismatches: 1, Indels: 6
0.83 0.02 0.15
Matches are distributed among these distances:
21 4 0.12
22 14 0.41
23 16 0.47
ACGTcount: A:0.78, C:0.02, G:0.05, T:0.15
Consensus pattern (21 bp):
AAAAAATAAATAAAAAATAAA
Found at i:40867 original size:15 final size:15
Alignment explanation
Indices: 40819--40875 Score: 55
Period size: 15 Copynumber: 3.8 Consensus size: 15
40809 GACCCCTAAA
40819 AAATGAAATAAAAATAG
1 AAAT-AAATAAAAA-AG
* * *
40836 CAA-AAA-AATAAAT
1 AAATAAATAAAAAAG
40849 AAATAAATAAAAAAG
1 AAATAAATAAAAAAG
40864 AAATAAATAAAA
1 AAATAAATAAAA
40876 TGACATATTT
Statistics
Matches: 32, Mismatches: 6, Indels: 6
0.73 0.14 0.14
Matches are distributed among these distances:
13 3 0.09
14 7 0.22
15 20 0.62
17 2 0.06
ACGTcount: A:0.77, C:0.02, G:0.05, T:0.16
Consensus pattern (15 bp):
AAATAAATAAAAAAG
Found at i:41777 original size:44 final size:43
Alignment explanation
Indices: 41727--41860 Score: 103
Period size: 44 Copynumber: 3.1 Consensus size: 43
41717 TACGGGAAAG
41727 CCAAGTGGTATATTCCTCAGATGGTTCCCCTTCGCAGGTATGAA
1 CCAAGTGGTATATTCCTCAGATGGTTCCCCTTCGC-GGTATGAA
* ** ** * * *
41771 CCAAGTGAG-ATGA-TCTTTGGATGACTCCCCTTCACGGGA-AAA
1 CCAAGTG-GTAT-ATTCCTCAGATGGTTCCCCTTCGCGGTATGAA
* * * *
41813 CCATGTGATATATTCCTCAGGTGGTTCCCCTTCGCGGGTCTGAA
1 CCAAGTGGTATATTCCTCAGATGGTTCCCCTTCGC-GGTATGAA
41857 CCAA
1 CCAA
41861 TTGACATGAT
Statistics
Matches: 63, Mismatches: 21, Indels: 12
0.66 0.22 0.12
Matches are distributed among these distances:
41 1 0.02
42 25 0.40
43 5 0.08
44 30 0.48
45 2 0.03
ACGTcount: A:0.23, C:0.26, G:0.23, T:0.28
Consensus pattern (43 bp):
CCAAGTGGTATATTCCTCAGATGGTTCCCCTTCGCGGTATGAA
Found at i:41825 original size:86 final size:86
Alignment explanation
Indices: 41698--41906 Score: 283
Period size: 86 Copynumber: 2.4 Consensus size: 86
41688 CGGTCATAAT
* * * * * *
41698 TCTTTAGATGACTTCCATTTACGGGAAAGCCAAGTGGTATATTCCTCAGATGGTTCCCCTTCGCA
1 TCTTTGGATGACTCCCCTTCACGGGAAAGCCATGTGATATATTCCTCAGATGGTTCCCCTTCGCA
*
41763 GGTATGAACCAAGTGAGATGA
66 GGTATGAACCAAGTGACATGA
* * *
41784 TCTTTGGATGACTCCCCTTCACGGGAAAACCATGTGATATATTCCTCAGGTGGTTCCCCTTCGCG
1 TCTTTGGATGACTCCCCTTCACGGGAAAGCCATGTGATATATTCCTCAGATGGTTCCCCTTCGCA
* *
41849 GGTCTGAACCAATTGACATGA
66 GGTATGAACCAAGTGACATGA
* * *
41870 TCTTTGGGTGGCTCTCCTTCACGGGAAAGCCATGTGA
1 TCTTTGGATGACTCCCCTTCACGGGAAAGCCATGTGA
41907 AATGTTCTTC
Statistics
Matches: 107, Mismatches: 16, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
86 107 1.00
ACGTcount: A:0.23, C:0.24, G:0.24, T:0.29
Consensus pattern (86 bp):
TCTTTGGATGACTCCCCTTCACGGGAAAGCCATGTGATATATTCCTCAGATGGTTCCCCTTCGCA
GGTATGAACCAAGTGACATGA
Found at i:45812 original size:20 final size:22
Alignment explanation
Indices: 45770--45816 Score: 62
Period size: 23 Copynumber: 2.2 Consensus size: 22
45760 ACATGGGAAA
45770 ATGAAAAAAATGACATGCAATGC
1 ATGAAAAAAATGACATG-AATGC
*
45793 ATGAAAATAAT-ACATG-ATGC
1 ATGAAAAAAATGACATGAATGC
45813 ATGA
1 ATGA
45817 GAATTAGAGG
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
20 8 0.35
22 5 0.22
23 10 0.43
ACGTcount: A:0.51, C:0.11, G:0.17, T:0.21
Consensus pattern (22 bp):
ATGAAAAAAATGACATGAATGC
Found at i:47867 original size:20 final size:20
Alignment explanation
Indices: 47842--47893 Score: 61
Period size: 20 Copynumber: 2.5 Consensus size: 20
47832 ATAATAAAAT
* *
47842 ATAAAAAATATTAAAAGAAA
1 ATAAAAAATAATAAAACAAA
47862 AT-AAAAATAAATAAAACAAA
1 ATAAAAAAT-AATAAAACAAA
47882 ATAATAAAATAA
1 ATAA-AAAATAA
47894 AGGGAATATA
Statistics
Matches: 27, Mismatches: 2, Indels: 5
0.79 0.06 0.15
Matches are distributed among these distances:
19 6 0.22
20 13 0.48
21 3 0.11
22 5 0.19
ACGTcount: A:0.77, C:0.02, G:0.02, T:0.19
Consensus pattern (20 bp):
ATAAAAAATAATAAAACAAA
Found at i:48593 original size:12 final size:12
Alignment explanation
Indices: 48576--48603 Score: 56
Period size: 12 Copynumber: 2.3 Consensus size: 12
48566 AGATAAAATA
48576 AAATAATATCAT
1 AAATAATATCAT
48588 AAATAATATCAT
1 AAATAATATCAT
48600 AAAT
1 AAAT
48604 CCTAATTGAA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 16 1.00
ACGTcount: A:0.61, C:0.07, G:0.00, T:0.32
Consensus pattern (12 bp):
AAATAATATCAT
Found at i:49001 original size:12 final size:11
Alignment explanation
Indices: 48946--48997 Score: 50
Period size: 12 Copynumber: 4.4 Consensus size: 11
48936 ATTGGACCCC
48946 TAAAAAATAAAA
1 TAAAAAAT-AAA
*
48958 TAAAAATAAAAA
1 TAAAAA-ATAAA
*
48970 TAACAAAATGAA
1 TAA-AAAATAAA
48982 TAAATAAATAAA
1 TAAA-AAATAAA
48994 TAAA
1 TAAA
48998 TAAAATGGCA
Statistics
Matches: 33, Mismatches: 4, Indels: 6
0.77 0.09 0.14
Matches are distributed among these distances:
11 1 0.03
12 28 0.85
13 4 0.12
ACGTcount: A:0.77, C:0.02, G:0.02, T:0.19
Consensus pattern (11 bp):
TAAAAAATAAA
Found at i:54365 original size:60 final size:60
Alignment explanation
Indices: 54278--54433 Score: 170
Period size: 60 Copynumber: 2.6 Consensus size: 60
54268 ACGTCCTCAA
* * * ** * **
54278 AATCTTCATTCTAAATTAGTCCTCAAACTTTTGAACTTTTTAATTTCATCTTCAAACTATG
1 AATC-TCATTCTAAATTGGTCCCCAAACTTTTGAACATTCCAAATTCATCCACAAACTATG
*
54339 AATCTCATTCTAAATTGGTCCCCAAACTTTTAAACATTCCAAATTCATCCACAAACTATG
1 AATCTCATTCTAAATTGGTCCCCAAACTTTTGAACATTCCAAATTCATCCACAAACTATG
* **
54399 -ATCCTCATTCTATATTGACCCCCCAAACTTTTGAA
1 AAT-CTCATTCTAAATTG-GTCCCCAAACTTTTGAA
54434 TGCTTTTAGG
Statistics
Matches: 80, Mismatches: 13, Indels: 4
0.82 0.13 0.04
Matches are distributed among these distances:
59 2 0.03
60 60 0.75
61 18 0.22
ACGTcount: A:0.33, C:0.25, G:0.05, T:0.37
Consensus pattern (60 bp):
AATCTCATTCTAAATTGGTCCCCAAACTTTTGAACATTCCAAATTCATCCACAAACTATG
Found at i:54537 original size:29 final size:29
Alignment explanation
Indices: 54505--54603 Score: 76
Period size: 29 Copynumber: 3.3 Consensus size: 29
54495 TTGGGGATGG
54505 ATTTAGAATATTCAAAAGTTTGAGGATCA
1 ATTTAGAATATTCAAAAGTTTGAGGATCA
* * * *
54534 ATTTAGAATGAGAATC-ATAGTTTGAGAATGA
1 ATTTAGAAT---ATTCAAAAGTTTGAGGATCA
* * **
54565 AATTGGAATATTCAAAAGTTT-AGGGGCTA
1 ATTTAGAATATTCAAAAGTTTGAGGATC-A
54594 ATTTAGAATA
1 ATTTAGAATA
54604 AAAGTTATAG
Statistics
Matches: 51, Mismatches: 14, Indels: 10
0.68 0.19 0.13
Matches are distributed among these distances:
28 5 0.10
29 24 0.47
31 19 0.37
32 3 0.06
ACGTcount: A:0.41, C:0.05, G:0.20, T:0.33
Consensus pattern (29 bp):
ATTTAGAATATTCAAAAGTTTGAGGATCA
Found at i:54553 original size:60 final size:60
Alignment explanation
Indices: 54488--54619 Score: 151
Period size: 60 Copynumber: 2.2 Consensus size: 60
54478 AGACTGTGGG
* * * * *
54488 TCATAGTTTGGGGATGGATTTAGAATATTCAAAAGTTTGAGGATC-AATTTAGAATGAGAA
1 TCATAGTTTGAGAATGAAATTAGAATATTCAAAAGTTT-AGGAGCTAATTTAGAATGAGAA
* * *
54548 TCATAGTTTGAGAATGAAATTGGAATATTCAAAAGTTTAGGGGCTAATTTAGAAT-AAAA
1 TCATAGTTTGAGAATGAAATTAGAATATTCAAAAGTTTAGGAGCTAATTTAGAATGAGAA
*
54607 GTTATAGTTTGAG
1 -TCATAGTTTGAG
54620 GATATATGAT
Statistics
Matches: 61, Mismatches: 9, Indels: 4
0.82 0.12 0.05
Matches are distributed among these distances:
59 7 0.11
60 54 0.89
ACGTcount: A:0.38, C:0.05, G:0.23, T:0.34
Consensus pattern (60 bp):
TCATAGTTTGAGAATGAAATTAGAATATTCAAAAGTTTAGGAGCTAATTTAGAATGAGAA
Found at i:56735 original size:16 final size:17
Alignment explanation
Indices: 56704--56741 Score: 51
Period size: 16 Copynumber: 2.3 Consensus size: 17
56694 TTATTAAAAA
56704 AATATAAGATTGATTTT
1 AATATAAGATTGATTTT
*
56721 AATATACGA-TGATTTT
1 AATATAAGATTGATTTT
*
56737 GATAT
1 AATAT
56742 TAGAGATTAG
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
16 11 0.58
17 8 0.42
ACGTcount: A:0.39, C:0.03, G:0.13, T:0.45
Consensus pattern (17 bp):
AATATAAGATTGATTTT
Found at i:62757 original size:20 final size:20
Alignment explanation
Indices: 62732--62769 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
62722 TAATTAACGA
62732 TTTTTATCT-ACAGATGAATC
1 TTTTTATCTCA-AGATGAATC
62752 TTTTTATCTCAAGATGAA
1 TTTTTATCTCAAGATGAA
62770 ATATTGAGAT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
20 16 0.94
21 1 0.06
ACGTcount: A:0.32, C:0.13, G:0.11, T:0.45
Consensus pattern (20 bp):
TTTTTATCTCAAGATGAATC
Found at i:65479 original size:23 final size:23
Alignment explanation
Indices: 65430--65480 Score: 57
Period size: 23 Copynumber: 2.2 Consensus size: 23
65420 GTGTTATATT
**
65430 ATATTTTAAAAATATTAATTAGT
1 ATATTTTAAAAATATTAATTAAA
* * *
65453 ATATTTTAAATATCTTTATTAAA
1 ATATTTTAAAAATATTAATTAAA
65476 ATATT
1 ATATT
65481 ATTAGATTAT
Statistics
Matches: 23, Mismatches: 5, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.45, C:0.02, G:0.02, T:0.51
Consensus pattern (23 bp):
ATATTTTAAAAATATTAATTAAA
Found at i:65536 original size:19 final size:19
Alignment explanation
Indices: 65468--65536 Score: 61
Period size: 19 Copynumber: 3.6 Consensus size: 19
65458 TTAAATATCT
*
65468 TTATTAA-AATATTATTAGA
1 TTATTAATAATATTATT-TA
**
65487 TTATTAGATTAATATTAAATA
1 TTATTA-A-TAATATTATTTA
*
65508 -TATAAATAATATTATTTA
1 TTATTAATAATATTATTTA
65526 TTATTAATAAT
1 TTATTAATAAT
65537 TTAATAATAT
Statistics
Matches: 39, Mismatches: 7, Indels: 8
0.72 0.13 0.15
Matches are distributed among these distances:
18 10 0.26
19 16 0.41
20 5 0.13
21 1 0.03
22 7 0.18
ACGTcount: A:0.48, C:0.00, G:0.03, T:0.49
Consensus pattern (19 bp):
TTATTAATAATATTATTTA
Found at i:65635 original size:8 final size:8
Alignment explanation
Indices: 65624--65673 Score: 50
Period size: 8 Copynumber: 6.4 Consensus size: 8
65614 ATATAATATC
65624 TTATATTA
1 TTATATTA
*
65632 TTATAATA
1 TTATATTA
65640 -TA-ATTGA
1 TTATATT-A
*
65647 TTATTTTA
1 TTATATTA
*
65655 TTATAATA
1 TTATATTA
65663 TTATATTA
1 TTATATTA
65671 TTA
1 TTA
65674 GAAATATTAA
Statistics
Matches: 33, Mismatches: 6, Indels: 6
0.73 0.13 0.13
Matches are distributed among these distances:
6 2 0.06
7 3 0.09
8 26 0.79
9 2 0.06
ACGTcount: A:0.40, C:0.00, G:0.02, T:0.58
Consensus pattern (8 bp):
TTATATTA
Found at i:65643 original size:23 final size:24
Alignment explanation
Indices: 65613--65673 Score: 72
Period size: 23 Copynumber: 2.6 Consensus size: 24
65603 TTAAAATAAA
*
65613 AATATAATAT-CTTATATTATTAT
1 AATATAATATGATTATATTATTAT
*
65636 AATATAAT-TGATTATTTTATTAT
1 AATATAATATGATTATATTATTAT
* *
65659 AATATTATATTATTA
1 AATATAATATGATTA
65674 GAAATATTAA
Statistics
Matches: 32, Mismatches: 4, Indels: 3
0.82 0.10 0.08
Matches are distributed among these distances:
22 1 0.03
23 26 0.81
24 5 0.16
ACGTcount: A:0.43, C:0.02, G:0.02, T:0.54
Consensus pattern (24 bp):
AATATAATATGATTATATTATTAT
Found at i:66464 original size:13 final size:13
Alignment explanation
Indices: 66446--66505 Score: 63
Period size: 13 Copynumber: 4.6 Consensus size: 13
66436 ATAAGATATA
66446 ATATTTATTTATT
1 ATATTTATTTATT
*
66459 ATATTT-TCTATAT
1 ATATTTATTTAT-T
66472 ATAATTTATTTATT
1 AT-ATTTATTTATT
66486 -TATTTATCTT-TT
1 ATATTTAT-TTATT
66498 ATATTTAT
1 ATATTTAT
66506 ATTTAATTCT
Statistics
Matches: 40, Mismatches: 2, Indels: 10
0.77 0.04 0.19
Matches are distributed among these distances:
12 12 0.30
13 19 0.47
14 5 0.12
15 4 0.10
ACGTcount: A:0.30, C:0.03, G:0.00, T:0.67
Consensus pattern (13 bp):
ATATTTATTTATT
Found at i:69883 original size:16 final size:16
Alignment explanation
Indices: 69862--69896 Score: 61
Period size: 16 Copynumber: 2.2 Consensus size: 16
69852 TGCGATCAAC
*
69862 GAAAGGGAGAGGAGAA
1 GAAAGGGAGAAGAGAA
69878 GAAAGGGAGAAGAGAA
1 GAAAGGGAGAAGAGAA
69894 GAA
1 GAA
69897 CTCTTACCAA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.54, C:0.00, G:0.46, T:0.00
Consensus pattern (16 bp):
GAAAGGGAGAAGAGAA
Found at i:71393 original size:2 final size:2
Alignment explanation
Indices: 71388--71424 Score: 74
Period size: 2 Copynumber: 18.5 Consensus size: 2
71378 AAAAAAAGTA
71388 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
71425 AGTATAATAA
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 35 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:71494 original size:18 final size:18
Alignment explanation
Indices: 71471--71519 Score: 59
Period size: 18 Copynumber: 2.8 Consensus size: 18
71461 AAAGAAAATA
71471 AAAATAATATATATATA-C
1 AAAATAATATATATA-ACC
71489 AAAATAATGATATA-AACC
1 AAAATAAT-ATATATAACC
71507 AAAAT-ATATATAT
1 AAAATAATATATAT
71520 GTATAATATA
Statistics
Matches: 28, Mismatches: 0, Indels: 7
0.80 0.00 0.20
Matches are distributed among these distances:
16 5 0.18
17 3 0.11
18 15 0.54
19 5 0.18
ACGTcount: A:0.61, C:0.06, G:0.02, T:0.31
Consensus pattern (18 bp):
AAAATAATATATATAACC
Found at i:71568 original size:25 final size:24
Alignment explanation
Indices: 71522--71619 Score: 71
Period size: 23 Copynumber: 4.1 Consensus size: 24
71512 ATATATATGT
*
71522 ATAATATA-ATAAAT-ATTGAAAA
1 ATAATATACATAAATAAATGAAAA
*
71544 GTAATAATA-ATAAATAAATGAAAA
1 ATAAT-ATACATAAATAAATGAAAA
*
71568 A-AATAATACAGAAAATAAAT-AAAA
1 ATAAT-ATACA-TAAATAAATGAAAA
* *
71592 AAAATATATATAAATACTAATGAAAA
1 ATAATATACATAAATA--AATGAAAA
71618 AT
1 AT
71620 GAAATAAAAA
Statistics
Matches: 61, Mismatches: 7, Indels: 12
0.76 0.09 0.15
Matches are distributed among these distances:
22 4 0.07
23 21 0.34
24 17 0.28
25 14 0.23
26 5 0.08
ACGTcount: A:0.67, C:0.02, G:0.05, T:0.26
Consensus pattern (24 bp):
ATAATATACATAAATAAATGAAAA
Found at i:71572 original size:23 final size:24
Alignment explanation
Indices: 71546--71618 Score: 78
Period size: 25 Copynumber: 3.0 Consensus size: 24
71536 ATTGAAAAGT
71546 AATAATA-ATAAATAAATGAAAAA
1 AATAATACATAAATAAATGAAAAA
* *
71569 AATAATACAGAAAATAAATAAAAAA
1 AATAATACA-TAAATAAATGAAAAA
*
71594 AAT-ATATATAAATACTAATGAAAAA
1 AATAATACATAAATA--AATGAAAAA
71619 TGAAATAAAA
Statistics
Matches: 41, Mismatches: 5, Indels: 6
0.79 0.10 0.12
Matches are distributed among these distances:
23 12 0.29
24 5 0.12
25 24 0.59
ACGTcount: A:0.71, C:0.03, G:0.04, T:0.22
Consensus pattern (24 bp):
AATAATACATAAATAAATGAAAAA
Found at i:71677 original size:13 final size:14
Alignment explanation
Indices: 71654--71684 Score: 55
Period size: 13 Copynumber: 2.3 Consensus size: 14
71644 TTTAAATAGA
71654 TAAAAATAAGAAAT
1 TAAAAATAAGAAAT
71668 TAAAAA-AAGAAAT
1 TAAAAATAAGAAAT
71681 TAAA
1 TAAA
71685 CTGTTAAGGG
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 11 0.65
14 6 0.35
ACGTcount: A:0.74, C:0.00, G:0.06, T:0.19
Consensus pattern (14 bp):
TAAAAATAAGAAAT
Found at i:73416 original size:84 final size:84
Alignment explanation
Indices: 73280--74494 Score: 1443
Period size: 84 Copynumber: 14.5 Consensus size: 84
73270 ACTCGATAAA
* * * * * * * * * *
73280 TTTGTTGACATATAGCCCTTCTTGCCTTAAGCTATGTTGTAAATGATGTGCCTTTGAGCTGAGTG
1 TTTGTTGGCAGATAACCCTTCTAGCCTTGAGTTATGCTGCAAATGATGTGCCTTGGAGCTGAGCG
* *
73345 TAATCGAACTCGCAGGTCT
66 TAGTCGAACTCGAAGGTCT
* * * * * **
73364 TTTATTGGCAGATAACTCTTCTAGCCTTGAGTTATGATGCAAATGATATGCCTTTGAGCTGAATG
1 TTTGTTGGCAGATAACCCTTCTAGCCTTGAGTTATGCTGCAAATGATGTGCCTTGGAGCTGAGCG
*
73429 TAATCGAACTCGAAGGTC-
66 TAGTCGAACTCGAAGGTCT
* * * * * * * * * *
73447 TTTGATGGCAGATAGCCCTTCTTGACTTAAGCTATACTGCAAATAATGTGCCTTTGAGCTGAGTG
1 TTTGTTGGCAGATAACCCTTCTAGCCTTGAGTTATGCTGCAAATGATGTGCCTTGGAGCTGAGCG
* *
73512 TAATCGAACTCAAAGGT-T
66 TAGTCGAACTCGAAGGTCT
* * * *
73530 TTTGTTGACAGATAACCCTTCTAGCCTTGAGTTATGCTGTAAATGATCTTCCTTGGAGCTGAGCG
1 TTTGTTGGCAGATAACCCTTCTAGCCTTGAGTTATGCTGCAAATGATGTGCCTTGGAGCTGAGCG
73595 TAGTCGAACTCGAAGGTCT
66 TAGTCGAACTCGAAGGTCT
* *
73614 TTTGTTGGTAGATAACCCTTCTAGCCTTGAGTTATACTGCAAATGATGTGCCTTGGAGCTGAGCG
1 TTTGTTGGCAGATAACCCTTCTAGCCTTGAGTTATGCTGCAAATGATGTGCCTTGGAGCTGAGCG
73679 TAGTCGAACTCGAAGGTCT
66 TAGTCGAACTCGAAGGTCT
* ** * * * ** * *
73698 TTGGTTGGCAGATAGTCCTTCTCGACTTAAACTATGCTACAAATGATGTTCCTTGGAGCTGAGCG
1 TTTGTTGGCAGATAACCCTTCTAGCCTTGAGTTATGCTGCAAATGATGTGCCTTGGAGCTGAGCG
73763 TAGTCGAACTCGAAGGTCT
66 TAGTCGAACTCGAAGGTCT
* * * *
73782 TTTGTTGGTAGATAACCCTTCTAGCCTTGAGTTATACTGCAAATAATGTGCCTTGGAGTTGAGCG
1 TTTGTTGGCAGATAACCCTTCTAGCCTTGAGTTATGCTGCAAATGATGTGCCTTGGAGCTGAGCG
*
73847 TAGTCAAACTCGAAGGTCT
66 TAGTCGAACTCGAAGGTCT
* * * * * * * *
73866 TTGGTTGGTAGATAGCCCTTCTCGACTTAAGCTT-TGCTGC-AATGATGTGCCTTTGAGCTGAGT
1 TTTGTTGGCAGATAACCCTTCTAGCCTTGAG-TTATGCTGCAAATGATGTGCCTTGGAGCTGAGC
* * *
73929 GTAATCGAACTTGAAGGT-A
65 GTAGTCGAACTCGAAGGTCT
* * * *
73948 TTTGTTGACAGATAACCCTTCTAGCCTTTAGTTATGCTGTAAATGATGTTCCTTGGAGCTGAGCG
1 TTTGTTGGCAGATAACCCTTCTAGCCTTGAGTTATGCTGCAAATGATGTGCCTTGGAGCTGAGCG
74013 TAGTCGAACTCGAAGGTCT
66 TAGTCGAACTCGAAGGTCT
* *
74032 TTTATTGGCAGATAACCCTTCTAGCCTTGAGTTATGCTGCAAATGATGTGCCTTGGAGCTGAGTG
1 TTTGTTGGCAGATAACCCTTCTAGCCTTGAGTTATGCTGCAAATGATGTGCCTTGGAGCTGAGCG
*
74097 TAGTCGAACTTGAAGGTCT
66 TAGTCGAACTCGAAGGTCT
* * * * * * * * * * *
74116 TTGGTTGGCATATAGCCCTTCTCGACTTAAGTAATGCTACAAATGATATGCCTTTGAGCTGAGTG
1 TTTGTTGGCAGATAACCCTTCTAGCCTTGAGTTATGCTGCAAATGATGTGCCTTGGAGCTGAGCG
*
74181 TAATCGAACTCGAAGGTC-
66 TAGTCGAACTCGAAGGTCT
* ** * * * * *
74199 TTTATTGATAGATTACCCTTCTAGCCTTTAGTTATGATGTAAATGATGTGCCTTGGAGCTGATCG
1 TTTGTTGGCAGATAACCCTTCTAGCCTTGAGTTATGCTGCAAATGATGTGCCTTGGAGCTGAGCG
* *
74264 TAGTCAAACTCGAAGGTTT
66 TAGTCGAACTCGAAGGTCT
* *
74283 TTTGTTGGCATATAACCCTTCTAGCCTTGAGTTATGTTGCAAATGATGTGCCTTGGAGCTGAGCG
1 TTTGTTGGCAGATAACCCTTCTAGCCTTGAGTTATGCTGCAAATGATGTGCCTTGGAGCTGAGCG
74348 TAGTCGAACTCGAAGGTCT
66 TAGTCGAACTCGAAGGTCT
* * * * * *
74367 TTTGTTGGCAGATAGCCCTTATAGCCTTGAGCTATGCTGCAAATGTTGCGCCTTAGAGCTGAGCG
1 TTTGTTGGCAGATAACCCTTCTAGCCTTGAGTTATGCTGCAAATGATGTGCCTTGGAGCTGAGCG
*
74432 TAGTCGAACTCGAAGGTAT
66 TAGTCGAACTCGAAGGTCT
* *
74451 TTGGTTGGCAGATAACCCTTATAGCCTTGAGTTATGCTGCAAAT
1 TTTGTTGGCAGATAACCCTTCTAGCCTTGAGTTATGCTGCAAAT
74495 AAATAATGAA
Statistics
Matches: 956, Mismatches: 168, Indels: 14
0.84 0.15 0.01
Matches are distributed among these distances:
81 2 0.00
82 29 0.03
83 266 0.28
84 657 0.69
85 2 0.00
ACGTcount: A:0.24, C:0.19, G:0.24, T:0.33
Consensus pattern (84 bp):
TTTGTTGGCAGATAACCCTTCTAGCCTTGAGTTATGCTGCAAATGATGTGCCTTGGAGCTGAGCG
TAGTCGAACTCGAAGGTCT
Found at i:73916 original size:418 final size:418
Alignment explanation
Indices: 73320--74494 Score: 1687
Period size: 418 Copynumber: 2.8 Consensus size: 418
73310 GCTATGTTGT
* * *
73320 AAATGATGTGCCTTTGAGCTGAGTGTAATCGAACTCGCAGGTCTTTTATTGGCAGATAACTCTTC
1 AAATGATGTGCCTTTGAGCTGAGTGTAATCGAACTCGAAGGTCTTTTATTGGTAGATAACCCTTC
* * * * *
73385 TAGCCTTGAGTTATGATGCAAATGATATGCCTTTGAGCTGAATGTAATCGAACTCGAAGGTCTTT
66 TAGCCTTGAGTTATGATGCAAATGATGTGCCTTGGAGCTGAACGTAGTCAAACTCGAAGGTCTTT
* * * * *
73450 GATGGCAGATAGCCCTTCTTGACTTAAGCTATACTGCAAATAATGTGCCTTTGAGCTGAGTGTAA
131 GTTGGCAGATAGCCCTTCTAGACTTAAGCTTTGCTGCAAATGATGTGCCTTTGAGCTGAGTGTAA
*
73515 TCGAACTCAAAGGTTTTTGTTGACAGATAACCCTTCTAGCCTTGAGTTATGCTGTAAATGATCTT
196 TCGAACTCGAAGGTTTTTGTTGACAGATAACCCTTCTAGCCTTGAGTTATGCTGTAAATGATCTT
*
73580 CCTTGGAGCTGAGCGTAGTCGAACTCGAAGGTCTTTTGTTGGTAGATAACCCTTCTAGCCTTGAG
261 CCTTGGAGCTGAGCGTAGTCGAACTCGAAGGTCTTTTGTTGGCAGATAACCCTTCTAGCCTTGAG
*
73645 TTATACTGCAAATGATGTGCCTTGGAGCTGAGCGTAGTCGAACTCGAAGGTCTTTGGTTGGCAGA
326 TTATGCTGCAAATGATGTGCCTTGGAGCTGAGCGTAGTCGAACTCGAAGGTCTTTGGTTGGCAGA
*
73710 TAGTCCTTCTCGACTTAAACT-ATGCTAC
391 TAGCCCTTCTCGACTT-AACTAATGCTAC
* * * * *
73738 AAATGATGTTCCTTGGAGCTGAGCGTAGTCGAACTCGAAGGTCTTTTGTTGGTAGATAACCCTTC
1 AAATGATGTGCCTTTGAGCTGAGTGTAATCGAACTCGAAGGTCTTTTATTGGTAGATAACCCTTC
* * *
73803 TAGCCTTGAGTTAT-ACTGCAAATAATGTGCCTTGGAGTTGAGCGTAGTCAAACTCGAAGGTCTT
66 TAGCCTTGAGTTATGA-TGCAAATGATGTGCCTTGGAGCTGAACGTAGTCAAACTCGAAGGTCTT
* *
73867 TGGTTGGTAGATAGCCCTTCTCGACTTAAGCTTTGCTGC-AATGATGTGCCTTTGAGCTGAGTGT
130 T-GTTGGCAGATAGCCCTTCTAGACTTAAGCTTTGCTGCAAATGATGTGCCTTTGAGCTGAGTGT
* * * *
73931 AATCGAACTTGAAGGTATTTGTTGACAGATAACCCTTCTAGCCTTTAGTTATGCTGTAAATGATG
194 AATCGAACTCGAAGGTTTTTGTTGACAGATAACCCTTCTAGCCTTGAGTTATGCTGTAAATGATC
*
73996 TTCCTTGGAGCTGAGCGTAGTCGAACTCGAAGGTCTTTTATTGGCAGATAACCCTTCTAGCCTTG
259 TTCCTTGGAGCTGAGCGTAGTCGAACTCGAAGGTCTTTTGTTGGCAGATAACCCTTCTAGCCTTG
* *
74061 AGTTATGCTGCAAATGATGTGCCTTGGAGCTGAGTGTAGTCGAACTTGAAGGTCTTTGGTTGGCA
324 AGTTATGCTGCAAATGATGTGCCTTGGAGCTGAGCGTAGTCGAACTCGAAGGTCTTTGGTTGGCA
* *
74126 TATAGCCCTTCTCGACTTAAGTAATGCTAC
389 GATAGCCCTTCTCGACTTAACTAATGCTAC
* * *
74156 AAATGATATGCCTTTGAGCTGAGTGTAATCGAACTCGAAGGTC-TTTATTGATAGATTACCCTTC
1 AAATGATGTGCCTTTGAGCTGAGTGTAATCGAACTCGAAGGTCTTTTATTGGTAGATAACCCTTC
* * * *
74220 TAGCCTTTAGTTATGATGTAAATGATGTGCCTTGGAGCTGATCGTAGTCAAACTCGAAGGTTTTT
66 TAGCCTTGAGTTATGATGCAAATGATGTGCCTTGGAGCTGAACGTAGTCAAACTCGAAGG-TCTT
* * * * * * *
74285 TGTTGGCATATAACCCTTCTAGCCTTGAG-TTATGTTGCAAATGATGTGCCTTGGAGCTGAGCGT
130 TGTTGGCAGATAGCCCTTCTAGACTTAAGCTT-TGCTGCAAATGATGTGCCTTTGAGCTGAGTGT
* * * * * * *
74349 AGTCGAACTCGAAGGTCTTTTGTTGGCAGATAGCCCTTATAGCCTTGAGCTATGCTGCAAATGTT
194 AATCGAACTCGAAGGT-TTTTGTTGACAGATAACCCTTCTAGCCTTGAGTTATGCTGTAAATGAT
* * * * *
74414 GC-GCCTTAGAGCTGAGCGTAGTCGAACTCGAAGGTATTTGGTTGGCAGATAACCCTTATAGCCT
258 -CTTCCTTGGAGCTGAGCGTAGTCGAACTCGAAGGTCTTTTGTTGGCAGATAACCCTTCTAGCCT
74478 TGAGTTATGCTGCAAAT
322 TGAGTTATGCTGCAAAT
74495 AAATAATGAA
Statistics
Matches: 673, Mismatches: 75, Indels: 17
0.88 0.10 0.02
Matches are distributed among these distances:
416 2 0.00
417 102 0.15
418 424 0.63
419 145 0.22
ACGTcount: A:0.24, C:0.18, G:0.24, T:0.33
Consensus pattern (418 bp):
AAATGATGTGCCTTTGAGCTGAGTGTAATCGAACTCGAAGGTCTTTTATTGGTAGATAACCCTTC
TAGCCTTGAGTTATGATGCAAATGATGTGCCTTGGAGCTGAACGTAGTCAAACTCGAAGGTCTTT
GTTGGCAGATAGCCCTTCTAGACTTAAGCTTTGCTGCAAATGATGTGCCTTTGAGCTGAGTGTAA
TCGAACTCGAAGGTTTTTGTTGACAGATAACCCTTCTAGCCTTGAGTTATGCTGTAAATGATCTT
CCTTGGAGCTGAGCGTAGTCGAACTCGAAGGTCTTTTGTTGGCAGATAACCCTTCTAGCCTTGAG
TTATGCTGCAAATGATGTGCCTTGGAGCTGAGCGTAGTCGAACTCGAAGGTCTTTGGTTGGCAGA
TAGCCCTTCTCGACTTAACTAATGCTAC
Found at i:75754 original size:94 final size:94
Alignment explanation
Indices: 75570--75831 Score: 357
Period size: 94 Copynumber: 2.7 Consensus size: 94
75560 GGCTAGCTGA
* * * *
75570 ATCCATAAAGCCAGGGCGTTTAACCAATTGCTCTAGAGGGACAGCTTAA--TATAATTGTATAGA
1 ATCCATAAAG-CTGGGCGTTTAACCAATTGCTCTAGAGGGACAACTCAAGCT-TTATTG--T--A
*
75633 TATTATAATCACCTTTATCAGGTTAGCTGAATATT
60 TATTATAATCACCTTTATCAGGCTAGCTGAATATT
*
75668 ATCCATAAAGCTGGGCATTTAACCAATTGCTCTAGAGGGACAACTCAAGCTTTATTGTATATTAT
1 ATCCATAAAGCTGGGCGTTTAACCAATTGCTCTAGAGGGACAACTCAAGCTTTATTGTATATTAT
*
75733 AATCACCTTTATCAGGCTAGCTGAATCTT
66 AATCACCTTTATCAGGCTAGCTGAATATT
* *
75762 ATCCATAAAGCTGAGGCGTTTAACCAATTACTTTAGAGGGACAACTCAAGCTTTATTGTATATAT
1 ATCCATAAAGCTG-GGCGTTTAACCAATTGCTCTAGAGGGACAACTCAAGCTTTATTGTATAT-T
75827 ATAAT
64 ATAAT
75832 ATTATAATCT
Statistics
Matches: 150, Mismatches: 10, Indels: 10
0.88 0.06 0.06
Matches are distributed among these distances:
94 47 0.31
95 46 0.31
96 7 0.05
97 34 0.23
98 15 0.10
99 1 0.01
ACGTcount: A:0.33, C:0.18, G:0.16, T:0.33
Consensus pattern (94 bp):
ATCCATAAAGCTGGGCGTTTAACCAATTGCTCTAGAGGGACAACTCAAGCTTTATTGTATATTAT
AATCACCTTTATCAGGCTAGCTGAATATT
Found at i:78057 original size:31 final size:31
Alignment explanation
Indices: 78019--78078 Score: 120
Period size: 31 Copynumber: 1.9 Consensus size: 31
78009 AAACATTTTG
78019 ATATTTCGATATAACAAATTAAGTTAAATAA
1 ATATTTCGATATAACAAATTAAGTTAAATAA
78050 ATATTTCGATATAACAAATTAAGTTAAAT
1 ATATTTCGATATAACAAATTAAGTTAAAT
78079 GATTTTTAAG
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 29 1.00
ACGTcount: A:0.50, C:0.07, G:0.07, T:0.37
Consensus pattern (31 bp):
ATATTTCGATATAACAAATTAAGTTAAATAA
Found at i:80632 original size:12 final size:12
Alignment explanation
Indices: 80615--80639 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
80605 TAAAAAGTCT
80615 ATGATAATAATA
1 ATGATAATAATA
80627 ATGATAATAATA
1 ATGATAATAATA
80639 A
1 A
80640 AGAGGAAATA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.60, C:0.00, G:0.08, T:0.32
Consensus pattern (12 bp):
ATGATAATAATA
Found at i:80716 original size:19 final size:19
Alignment explanation
Indices: 80694--80754 Score: 58
Period size: 19 Copynumber: 3.3 Consensus size: 19
80684 TTAAAAAATT
80694 TAAAAAAACTAAAACAAAA
1 TAAAAAAACTAAAACAAAA
*
80713 TAAATAAA-TAAAAC-AAA
1 TAAAAAAACTAAAACAAAA
*
80730 TAAGAATAAAC-ATAA-AAAA
1 TAA-AA-AAACTAAAACAAAA
80749 TAAAAA
1 TAAAAA
80755 CAAATACAAA
Statistics
Matches: 35, Mismatches: 3, Indels: 10
0.73 0.06 0.21
Matches are distributed among these distances:
17 7 0.20
18 9 0.26
19 19 0.54
ACGTcount: A:0.77, C:0.07, G:0.02, T:0.15
Consensus pattern (19 bp):
TAAAAAAACTAAAACAAAA
Found at i:81137 original size:23 final size:23
Alignment explanation
Indices: 81078--81143 Score: 69
Period size: 23 Copynumber: 2.8 Consensus size: 23
81068 ATATATATAT
* *
81078 ATATATATATATAAATAAGTAGA
1 ATATATATAAATAAATAAATAGA
* * *
81101 ATAAAAATAGATAAATAAATAGA
1 ATATATATAAATAAATAAATAGA
*
81124 ATATGTATAAATAAAATAAA
1 ATATATATAAAT-AAATAAA
81144 AATAATAAAA
Statistics
Matches: 34, Mismatches: 8, Indels: 1
0.79 0.19 0.02
Matches are distributed among these distances:
23 27 0.79
24 7 0.21
ACGTcount: A:0.64, C:0.00, G:0.08, T:0.29
Consensus pattern (23 bp):
ATATATATAAATAAATAAATAGA
Found at i:81260 original size:24 final size:23
Alignment explanation
Indices: 81215--81260 Score: 56
Period size: 24 Copynumber: 2.0 Consensus size: 23
81205 TATATACGTA
* *
81215 TAATATAATAAAATATTAAAAAT
1 TAATATAATAAAAAATGAAAAAT
*
81238 TAATAATAATAAAAAATGGAAAA
1 TAAT-ATAATAAAAAATGAAAAA
81261 CAAAAAAATA
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
23 4 0.21
24 15 0.79
ACGTcount: A:0.67, C:0.00, G:0.04, T:0.28
Consensus pattern (23 bp):
TAATATAATAAAAAATGAAAAAT
Found at i:82519 original size:22 final size:23
Alignment explanation
Indices: 82471--82522 Score: 61
Period size: 22 Copynumber: 2.3 Consensus size: 23
82461 ATAAGTAATA
* **
82471 AATATATATATATATTTATAATT
1 AATATATATATATATATATAAAC
*
82494 AATATA-ATATATGTATATAAAC
1 AATATATATATATATATATAAAC
82516 AATATAT
1 AATATAT
82523 GACACATAGG
Statistics
Matches: 24, Mismatches: 4, Indels: 2
0.80 0.13 0.07
Matches are distributed among these distances:
22 18 0.75
23 6 0.25
ACGTcount: A:0.52, C:0.02, G:0.02, T:0.44
Consensus pattern (23 bp):
AATATATATATATATATATAAAC
Done.