genome.fa.s3309.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003309.1 Hibiscus syriacus cultivar Beakdansim tig00006963_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  134173

Tables:   1   

This is table  1  of  1  ( 50 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2561--2724	83	2.0	83	86	3	235	33	9	6	50	1.60
2656--2716	32	1.9	32	86	6	88	32	8	1	57	1.38
15083--15134	3	17.3	3	100	0	104	34	0	0	65	0.93
18362--18422	32	1.9	32	83	9	81	22	13	11	52	1.72
20910--20953	21	2.1	21	82	0	52	36	2	2	59	1.23
22525--22574	22	2.3	22	92	0	82	16	44	12	28	1.83
35265--35305	2	20.5	2	100	0	82	51	0	0	48	1.00
41965--42044	21	4.0	21	84	7	96	23	28	21	26	1.99
54766--54805	2	20.0	2	100	0	80	50	0	0	50	1.00
62442--62477	5	7.2	5	100	0	72	0	38	0	61	0.96
63137--63196	22	2.7	23	82	12	79	40	3	11	45	1.57
64417--64450	2	17.0	2	93	0	59	47	0	2	50	1.16
69741--69765	11	2.3	11	100	0	50	36	24	8	32	1.84
70250--70306	27	2.2	26	96	3	105	38	7	15	38	1.75
76662--76787	23	5.5	23	85	2	146	28	21	23	26	1.99
76662--76760	11	8.7	11	82	5	108	32	21	23	23	1.98
76815--76892	31	2.5	31	78	4	75	23	15	26	34	1.94
80159--80206	23	2.0	23	92	4	78	68	2	4	25	1.18
80779--80871	28	3.1	28	70	20	71	38	1	3	56	1.22
80973--81012	21	1.9	21	94	0	71	52	7	2	37	1.43
81286--81412	51	2.5	50	80	1	137	17	33	29	19	1.95
81523--81562	20	2.0	20	90	4	64	37	20	0	42	1.52
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
81583--81611	14	2.1	14	93	6	51	20	6	6	65	1.40
83853--83925	25	3.0	24	68	24	62	27	6	2	63	1.34
87444--87570	50	2.5	51	85	10	170	29	20	22	27	1.98
99058--99092	2	18.0	2	94	5	63	51	0	0	48	1.00
101076--101125	20	2.5	20	83	0	64	34	24	14	28	1.93
101073--101189	61	1.9	61	81	6	139	35	23	16	24	1.95
101138--101190	20	2.7	20	93	0	88	24	28	20	26	1.99
101765--101969	20	11.1	19	78	13	178	13	22	21	42	1.87
101765--101969	33	5.6	38	77	11	178	13	22	21	42	1.87
102365--102422	20	2.9	20	89	0	89	37	20	22	18	1.94
102446--102499	14	3.5	14	77	22	63	11	20	20	48	1.80
102428--102498	33	2.2	33	84	0	88	19	19	21	39	1.93
102441--102518	33	2.4	33	91	0	120	12	23	21	42	1.87
102606--102642	14	2.6	14	86	0	56	48	21	0	29	1.50
104491--104612	19	6.6	19	75	11	92	42	23	19	13	1.87
104624--104745	14	7.9	14	75	20	109	9	18	24	47	1.78
104608--104761	32	4.8	32	97	1	272	11	18	23	46	1.81
104746--104789	20	2.2	20	88	4	63	18	25	20	36	1.95
105282--105326	18	2.5	18	88	0	72	13	15	44	26	1.83
106645--106682	20	1.9	20	88	0	58	50	21	15	13	1.78
106946--106989	22	2.0	22	95	0	79	18	15	45	20	1.85
107177--107229	20	2.7	20	93	0	88	24	18	28	28	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
107240--107332	20	4.6	20	78	4	96	17	24	18	39	1.91
107222--107332	41	2.7	41	94	4	188	17	22	18	42	1.89
107363--107403	21	2.0	21	85	0	55	34	31	17	17	1.93
115895--115935	2	20.5	2	100	0	82	51	0	0	48	1.00
122814--122881	30	2.3	29	83	14	95	26	25	8	39	1.85
131551--131777	120	1.9	119	85	4	314	42	11	9	36	1.73

Tables:   1

The End!