Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01003310.1 Hibiscus syriacus cultivar Beakdansim tig00006964_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 101324
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.34
Found at i:17029 original size:21 final size:21
Alignment explanation
Indices: 17003--17044 Score: 75
Period size: 21 Copynumber: 2.0 Consensus size: 21
16993 CCAAAATGGG
*
17003 GGGAATCGGTACCCCTTCATA
1 GGGAATCGATACCCCTTCATA
17024 GGGAATCGATACCCCTTCATA
1 GGGAATCGATACCCCTTCATA
17045 ATATTCAAAT
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.26, C:0.29, G:0.21, T:0.24
Consensus pattern (21 bp):
GGGAATCGATACCCCTTCATA
Found at i:17267 original size:30 final size:30
Alignment explanation
Indices: 17220--17309 Score: 146
Period size: 30 Copynumber: 3.0 Consensus size: 30
17210 AAATTTTGAA
17220 TAAATTCAATT-AAGTCCAAATACATTTTG
1 TAAATTCAATTCAAGTCCAAATACATTTTG
*
17249 TAAATTCAATTCAAGTCCAAATACGTTTTG
1 TAAATTCAATTCAAGTCCAAATACATTTTG
*
17279 TAAATTCAATTCAAGTCCAAAAACCATTTTG
1 TAAATTCAATTCAAGTCCAAATA-CATTTTG
17310 CCTTAAATTG
Statistics
Matches: 56, Mismatches: 3, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
29 11 0.20
30 39 0.70
31 6 0.11
ACGTcount: A:0.40, C:0.17, G:0.08, T:0.36
Consensus pattern (30 bp):
TAAATTCAATTCAAGTCCAAATACATTTTG
Found at i:34004 original size:25 final size:24
Alignment explanation
Indices: 33958--34027 Score: 61
Period size: 25 Copynumber: 2.9 Consensus size: 24
33948 AAAATGCCAC
*
33958 GTAGAATTTATCCCGAATGACCGT
1 GTAGAATTTATCCCGAAAGACCGT
* * **
33982 GTAGAAATTTGTCCTGAAAGACCAC
1 GTAG-AATTTATCCCGAAAGACCGT
* *
34007 GTAGAA-TTGTCCCGAATGACC
1 GTAGAATTTATCCCGAAAGACC
34028 ACATAGATTT
Statistics
Matches: 38, Mismatches: 7, Indels: 3
0.79 0.15 0.06
Matches are distributed among these distances:
23 13 0.34
24 6 0.16
25 19 0.50
ACGTcount: A:0.31, C:0.21, G:0.21, T:0.26
Consensus pattern (24 bp):
GTAGAATTTATCCCGAAAGACCGT
Found at i:34027 original size:23 final size:24
Alignment explanation
Indices: 33950--34058 Score: 107
Period size: 23 Copynumber: 4.6 Consensus size: 24
33940 CTCATACCAA
*
33950 AATG-CCACGTAGAATTTATCCCG
1 AATGACCACGTAGAATTTGTCCCG
** *
33973 AATGACCGTGTAGAAATTTGTCCTG
1 AATGACCACGTAG-AATTTGTCCCG
*
33998 AAAGACCACGTAGAA-TTGTCCCG
1 AATGACCACGTAGAATTTGTCCCG
* *
34021 AATGACCACATAG-ATTTGTCCTG
1 AATGACCACGTAGAATTTGTCCCG
* *
34044 AAGGACCGCGTAGAA
1 AATGACCACGTAGAA
34059 CCCTCAACTC
Statistics
Matches: 68, Mismatches: 14, Indels: 7
0.76 0.16 0.08
Matches are distributed among these distances:
22 1 0.01
23 39 0.57
24 9 0.13
25 19 0.28
ACGTcount: A:0.32, C:0.22, G:0.22, T:0.24
Consensus pattern (24 bp):
AATGACCACGTAGAATTTGTCCCG
Found at i:34045 original size:46 final size:48
Alignment explanation
Indices: 33954--34058 Score: 133
Period size: 46 Copynumber: 2.2 Consensus size: 48
33944 TACCAAAATG
***
33954 CCACGTAGAATTTATCCCGAATGACCGTGTAGAAATTTGTCCTGAAAGA
1 CCACGTAGAATTTATCCCGAATGACCACATAG-AATTTGTCCTGAAAGA
* *
34003 CCACGTAGAA-TTGTCCCGAATGACCACATAG-ATTTGTCCTGAAGGA
1 CCACGTAGAATTTATCCCGAATGACCACATAGAATTTGTCCTGAAAGA
*
34049 CCGCGTAGAA
1 CCACGTAGAA
34059 CCCTCAACTC
Statistics
Matches: 50, Mismatches: 6, Indels: 3
0.85 0.10 0.05
Matches are distributed among these distances:
46 23 0.46
48 17 0.34
49 10 0.20
ACGTcount: A:0.31, C:0.23, G:0.22, T:0.24
Consensus pattern (48 bp):
CCACGTAGAATTTATCCCGAATGACCACATAGAATTTGTCCTGAAAGA
Found at i:34226 original size:15 final size:15
Alignment explanation
Indices: 34198--34241 Score: 70
Period size: 15 Copynumber: 2.9 Consensus size: 15
34188 AGGGTACTTA
34198 CACGTAGAACATTTT
1 CACGTAGAACATTTT
* *
34213 CACTTAGCACATTTT
1 CACGTAGAACATTTT
34228 CACGTAGAACATTT
1 CACGTAGAACATTT
34242 ACTTACAAGT
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
15 25 1.00
ACGTcount: A:0.32, C:0.23, G:0.11, T:0.34
Consensus pattern (15 bp):
CACGTAGAACATTTT
Found at i:34790 original size:20 final size:20
Alignment explanation
Indices: 34765--34814 Score: 66
Period size: 20 Copynumber: 2.5 Consensus size: 20
34755 TTCAATTACA
*
34765 GTATCGATACCTTCC-TCTTG
1 GTATCGATACC-TCCATATTG
*
34785 GTATCGATACCTCCATATTT
1 GTATCGATACCTCCATATTG
34805 GTATCGATAC
1 GTATCGATAC
34815 TACTTCAATT
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
19 3 0.11
20 24 0.89
ACGTcount: A:0.22, C:0.26, G:0.14, T:0.38
Consensus pattern (20 bp):
GTATCGATACCTCCATATTG
Found at i:39732 original size:28 final size:28
Alignment explanation
Indices: 39700--39753 Score: 99
Period size: 28 Copynumber: 1.9 Consensus size: 28
39690 AGTTTAATCC
*
39700 TCAATTTAGTTCTTATGCTATTTTTTTT
1 TCAATTTAGTCCTTATGCTATTTTTTTT
39728 TCAATTTAGTCCTTATGCTATTTTTT
1 TCAATTTAGTCCTTATGCTATTTTTT
39754 AAAGGAATAC
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
28 25 1.00
ACGTcount: A:0.19, C:0.13, G:0.07, T:0.61
Consensus pattern (28 bp):
TCAATTTAGTCCTTATGCTATTTTTTTT
Found at i:52511 original size:19 final size:19
Alignment explanation
Indices: 52487--52523 Score: 74
Period size: 19 Copynumber: 1.9 Consensus size: 19
52477 ACTTTGATAC
52487 TGTAGAAAACAGACTGTAT
1 TGTAGAAAACAGACTGTAT
52506 TGTAGAAAACAGACTGTA
1 TGTAGAAAACAGACTGTA
52524 GGAAACAAAC
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.43, C:0.11, G:0.22, T:0.24
Consensus pattern (19 bp):
TGTAGAAAACAGACTGTAT
Found at i:54237 original size:26 final size:26
Alignment explanation
Indices: 54203--54260 Score: 107
Period size: 26 Copynumber: 2.2 Consensus size: 26
54193 ATGATTTATT
*
54203 TTTCACACGAGAGTCGAAAATGGTCA
1 TTTCTCACGAGAGTCGAAAATGGTCA
54229 TTTCTCACGAGAGTCGAAAATGGTCA
1 TTTCTCACGAGAGTCGAAAATGGTCA
54255 TTTCTC
1 TTTCTC
54261 TTATCTTATT
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 31 1.00
ACGTcount: A:0.29, C:0.21, G:0.21, T:0.29
Consensus pattern (26 bp):
TTTCTCACGAGAGTCGAAAATGGTCA
Found at i:57926 original size:2 final size:2
Alignment explanation
Indices: 57919--57974 Score: 112
Period size: 2 Copynumber: 28.0 Consensus size: 2
57909 TAATTGAATC
57919 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
57961 AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT
57975 TCAACACCTA
Statistics
Matches: 54, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 54 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:58928 original size:60 final size:60
Alignment explanation
Indices: 58850--59026 Score: 232
Period size: 59 Copynumber: 3.0 Consensus size: 60
58840 TAGTCGCCTC
** *
58850 CAACAAAGCAACGCCCTATAGTCGGAGGATAATTTTGTAACTTTTAATATTCGAGGGACT
1 CAACAAAGCAATACCCTATAGTCGGAGGATAATTTTGTAACTTTTAATAGTCGAGGGACT
* * *
58910 TAACAAAGCAATATCCTATGGTCGGAGGACT-ATTTTGTAACTTTTAATAGTC-AGGGACT
1 CAACAAAGCAATACCCTATAGTCGGAGGA-TAATTTTGTAACTTTTAATAGTCGAGGGACT
* * * * *
58969 CAACAAAGCAATACCCTATTGTCAGAGGACAACTTTGTAACTTTTAATAGTAGAGGGA
1 CAACAAAGCAATACCCTATAGTCGGAGGATAATTTTGTAACTTTTAATAGTCGAGGGA
59027 TCTTTGTAGA
Statistics
Matches: 101, Mismatches: 13, Indels: 6
0.84 0.11 0.05
Matches are distributed among these distances:
59 51 0.50
60 49 0.49
61 1 0.01
ACGTcount: A:0.34, C:0.17, G:0.20, T:0.29
Consensus pattern (60 bp):
CAACAAAGCAATACCCTATAGTCGGAGGATAATTTTGTAACTTTTAATAGTCGAGGGACT
Found at i:58997 original size:59 final size:59
Alignment explanation
Indices: 58826--59019 Score: 225
Period size: 59 Copynumber: 3.3 Consensus size: 59
58816 CAAGTGACCA
* * **
58826 TTTGTAACTTCTAATAGTC---GCCTCCAACAAAGCAACGCCCTATAGTCGGAGGA-TAAT
1 TTTGTAACTTTTAATAGTCAGGGACT-CAACAAAGCAATACCCTATAGTCGGAGGACT-AT
* * * *
58883 TTTGTAACTTTTAATATTCGAGGGACTTAACAAAGCAATATCCTATGGTCGGAGGACTAT
1 TTTGTAACTTTTAATAGTC-AGGGACTCAACAAAGCAATACCCTATAGTCGGAGGACTAT
* * * *
58943 TTTGTAACTTTTAATAGTCAGGGACTCAACAAAGCAATACCCTATTGTCAGAGGACAAC
1 TTTGTAACTTTTAATAGTCAGGGACTCAACAAAGCAATACCCTATAGTCGGAGGACTAT
59002 TTTGTAACTTTTAATAGT
1 TTTGTAACTTTTAATAGT
59020 AGAGGGATCT
Statistics
Matches: 117, Mismatches: 15, Indels: 8
0.84 0.11 0.06
Matches are distributed among these distances:
57 17 0.15
59 52 0.44
60 44 0.38
61 4 0.03
ACGTcount: A:0.32, C:0.19, G:0.18, T:0.31
Consensus pattern (59 bp):
TTTGTAACTTTTAATAGTCAGGGACTCAACAAAGCAATACCCTATAGTCGGAGGACTAT
Found at i:60272 original size:20 final size:19
Alignment explanation
Indices: 60229--60265 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 19
60219 ATTCAATCAA
60229 TATCGATATCGACAAGGGAG
1 TATCGATATCGA-AAGGGAG
60249 TATCGATATCG-AAGGGA
1 TATCGATATCGAAAGGGA
60266 AGGTATCAAT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 6 0.35
20 11 0.65
ACGTcount: A:0.35, C:0.14, G:0.30, T:0.22
Consensus pattern (19 bp):
TATCGATATCGAAAGGGAG
Found at i:60850 original size:45 final size:44
Alignment explanation
Indices: 60786--61006 Score: 230
Period size: 45 Copynumber: 5.4 Consensus size: 44
60776 ATAAAAGAAT
60786 AATGCATATGGGTGCATTATTGGCATGAAAGGATGTCAAAGCTGA
1 AATGCATATGGGTGCATTATTGGCATGAAAGGATG-CAAAGCTGA
* *
60831 AATGCATATGGGTGTATTATCGGCAT-AAA--A-G--AA--T--
1 AATGCATATGGGTGCATTATTGGCATGAAAGGATGCAAAGCTGA
*
60865 AATGCATATGGGTGCATTATTGGTATGAAAGGATGTCAAAGCTGA
1 AATGCATATGGGTGCATTATTGGCATGAAAGGATG-CAAAGCTGA
*
60910 AATGCATATGGGTGCATTATCGGCAT-AAA--A-G--AA--T--
1 AATGCATATGGGTGCATTATTGGCATGAAAGGATGCAAAGCTGA
60944 AATGCATATGGGTGCATTATTGGCATGAAAGGATGCCAAAGCTGA
1 AATGCATATGGGTGCATTATTGGCATGAAAGGATG-CAAAGCTGA
*
60989 AATACATATGGGTGCATT
1 AATGCATATGGGTGCATT
61007 GTCGGCATAA
Statistics
Matches: 145, Mismatches: 9, Indels: 44
0.73 0.05 0.22
Matches are distributed among these distances:
34 48 0.33
35 6 0.04
36 2 0.01
37 2 0.01
38 6 0.04
41 6 0.04
42 2 0.01
43 2 0.01
44 6 0.04
45 65 0.45
ACGTcount: A:0.35, C:0.11, G:0.27, T:0.28
Consensus pattern (44 bp):
AATGCATATGGGTGCATTATTGGCATGAAAGGATGCAAAGCTGA
Found at i:60869 original size:34 final size:34
Alignment explanation
Indices: 60831--60974 Score: 144
Period size: 34 Copynumber: 3.9 Consensus size: 34
60821 TCAAAGCTGA
*
60831 AATGCATATGGGTGTATTATCGGCATAAAAGAAT
1 AATGCATATGGGTGCATTATCGGCATAAAAGAAT
* *
60865 AATGCATATGGGTGCATTATTGGTATGAAAGGATGTCAAAGCT
1 AATGCATATGGGTGCATTATCGGCAT-AAA--A-G---AA--T
60908 GAAATGCATATGGGTGCATTATCGGCATAAAAGAAT
1 --AATGCATATGGGTGCATTATCGGCATAAAAGAAT
* *
60944 AATGCATATGGGTGCATTATTGGCATGAAAG
1 AATGCATATGGGTGCATTATCGGCATAAAAG
60975 GATGCCAAAG
Statistics
Matches: 92, Mismatches: 7, Indels: 22
0.76 0.06 0.18
Matches are distributed among these distances:
34 52 0.57
35 3 0.03
36 1 0.01
37 1 0.01
38 3 0.03
41 3 0.03
42 1 0.01
43 1 0.01
44 3 0.03
45 24 0.26
ACGTcount: A:0.35, C:0.10, G:0.26, T:0.28
Consensus pattern (34 bp):
AATGCATATGGGTGCATTATCGGCATAAAAGAAT
Found at i:61098 original size:79 final size:79
Alignment explanation
Indices: 60776--61097 Score: 511
Period size: 79 Copynumber: 4.1 Consensus size: 79
60766 TAACGAATAA
*
60776 ATAAAAGAATAATGCATATGGGTGCATTATTGGCATGAAAGGATGTCAAAGCTGAAATGCATATG
1 ATAAAAGAATAATGCATATGGGTGCATTATTGGCATGAAAGGATGCCAAAGCTGAAATGCATATG
*
60841 GGTGTATTATCGGC
66 GGTGCATTATCGGC
* *
60855 ATAAAAGAATAATGCATATGGGTGCATTATTGGTATGAAAGGATGTCAAAGCTGAAATGCATATG
1 ATAAAAGAATAATGCATATGGGTGCATTATTGGCATGAAAGGATGCCAAAGCTGAAATGCATATG
60920 GGTGCATTATCGGC
66 GGTGCATTATCGGC
*
60934 ATAAAAGAATAATGCATATGGGTGCATTATTGGCATGAAAGGATGCCAAAGCTGAAATACATATG
1 ATAAAAGAATAATGCATATGGGTGCATTATTGGCATGAAAGGATGCCAAAGCTGAAATGCATATG
*
60999 GGTGCATTGTCGGC
66 GGTGCATTATCGGC
* * * *
61013 ATAAAA-AAGTAATGCATATGAGTACATTATTGGCATGAAAGGATGCCAAAGTTAAAATGCATAT
1 ATAAAAGAA-TAATGCATATGGGTGCATTATTGGCATGAAAGGATGCCAAAGCTGAAATGCATAT
* **
61077 GGATGCATTATCAAC
65 GGGTGCATTATCGGC
61092 ATAAAA
1 ATAAAA
61098 ATATGCTATA
Statistics
Matches: 227, Mismatches: 15, Indels: 2
0.93 0.06 0.01
Matches are distributed among these distances:
78 2 0.01
79 225 0.99
ACGTcount: A:0.38, C:0.11, G:0.24, T:0.27
Consensus pattern (79 bp):
ATAAAAGAATAATGCATATGGGTGCATTATTGGCATGAAAGGATGCCAAAGCTGAAATGCATATG
GGTGCATTATCGGC
Found at i:66315 original size:21 final size:21
Alignment explanation
Indices: 66285--66361 Score: 68
Period size: 23 Copynumber: 3.5 Consensus size: 21
66275 GATAGATACT
*
66285 TTACAATATAAGCATTACCTA
1 TTACATTATAAGCATTACCTA
*
66306 TTACATTATATA-AATGCTACCTA
1 TTACATTATA-AGCAT--TACCTA
66329 TTACATTATATAAGCGA-TACCTA
1 TTACA-T-TATAAGC-ATTACCTA
66352 TTACATTATA
1 TTACATTATA
66362 TTTTTACCTA
Statistics
Matches: 46, Mismatches: 3, Indels: 14
0.73 0.05 0.22
Matches are distributed among these distances:
21 15 0.33
22 2 0.04
23 22 0.48
24 2 0.04
25 4 0.09
26 1 0.02
ACGTcount: A:0.40, C:0.17, G:0.05, T:0.38
Consensus pattern (21 bp):
TTACATTATAAGCATTACCTA
Found at i:66326 original size:23 final size:23
Alignment explanation
Indices: 66300--66362 Score: 99
Period size: 23 Copynumber: 2.7 Consensus size: 23
66290 ATATAAGCAT
* *
66300 TACCTATTACATTATATAAATGC
1 TACCTATTACATTATATAAACGA
*
66323 TACCTATTACATTATATAAGCGA
1 TACCTATTACATTATATAAACGA
66346 TACCTATTACATTATAT
1 TACCTATTACATTATAT
66363 TTTTACCTAT
Statistics
Matches: 37, Mismatches: 3, Indels: 0
0.93 0.08 0.00
Matches are distributed among these distances:
23 37 1.00
ACGTcount: A:0.38, C:0.17, G:0.05, T:0.40
Consensus pattern (23 bp):
TACCTATTACATTATATAAACGA
Found at i:66814 original size:23 final size:23
Alignment explanation
Indices: 66779--66851 Score: 119
Period size: 23 Copynumber: 3.2 Consensus size: 23
66769 ATACTTTACA
66779 ATATAAGCACTACCTATTACATT
1 ATATAAGCACTACCTATTACATT
* *
66802 ATATAAACGCTACCTATTACATT
1 ATATAAGCACTACCTATTACATT
*
66825 ATATAAGCACTACCTATTACATC
1 ATATAAGCACTACCTATTACATT
66848 ATAT
1 ATAT
66852 TTTTACCTAT
Statistics
Matches: 45, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
23 45 1.00
ACGTcount: A:0.40, C:0.22, G:0.04, T:0.34
Consensus pattern (23 bp):
ATATAAGCACTACCTATTACATT
Found at i:66822 original size:489 final size:489
Alignment explanation
Indices: 65892--69663 Score: 6292
Period size: 489 Copynumber: 7.8 Consensus size: 489
65882 TTATAATATG
* * * *
65892 TTGAAAGTATTCATACTTTTTTATAAAAAAGATCGATATTTTTTTTAAAGTTATATAATTTATGT
1 TTGAAAGTGTCCATAC-TTTTTATAAAAAAGATCGATACTTTTTTTAAAGTTATGTAATTTATGT
*
65957 TTCAATTTTTTTAATAGTGTTTCATGTTTTCCACCTACAATATTAATTTAATAATTTCATTTGCA
65 TTCAATTTTTTTAATAGTGTTTCATGTTTTCCACCTACAATATTAATTTAATAATTTCATTTACA
66022 CAAAAAATTATTTGATTGTTTTGATATTTTAT--AA-A--ATTTAGAATTTAAATTTAACAATAT
130 CAAAAAATTATTTGATTGTTTTGATATTTTATAAAATATTATTTAGAATTTAAATTTAACAATAT
* *
66082 TAACCAAATATAATAATAAATATGTAATATATATGTTTTTTGTTTTTAATTTAATAATAATATAT
195 TAACCAAAGATAATAATAAATATGTAATATATATGTTTATTGTTTTTAATTTAATAATAATATAT
* *
66147 ATCGTAACGTAAAAAATAAATCATTAGACGCCAATAATTACTAAATTAATATATTAAAACTCACT
260 ACCGTAACGTAAAAAATAAATCATTAGACGCCAATAATTACTAAATTAATATCTTAAAACTCACT
* *
66212 CAAAAGATAACCTTAAATTAATGTTTTCCACAATGAAAAAAGTATGGACACTTTTATAAAAAAGA
325 CAAAAGATAACCTTAAATTAATGTTTTCCACAGTGAAAAAAGTATGGACACTTTTATAAAAAGGA
* *
66277 TAGATACTTTACAATATAAGCATTACCTATTACATTATATAAATGCTACCTATTACATTATATAA
390 TAGATACTTTACAATATAAGCACTACCTATTACATTATATAAACGCTACCTATTACATTATATAA
*
66342 GCGATACCTATTACATTATATTTTTACCTATTATA
455 GCGATACCTATTACATCATATTTTTACCTATTATA
*
66377 TTGAAAGTGTCCATACTTTTTATAAAAATGATCGATACTTTTTTTAAAGTTATGTAATTTATGTT
1 TTGAAAGTGTCCATACTTTTTATAAAAAAGATCGATACTTTTTTTAAAGTTATGTAATTTATGTT
*
66442 TCAATTTTTTTAACAGTGTTTCATGTTTTCCACCTACAATATTAATTTAATAATTTCATTTACAC
66 TCAATTTTTTTAATAGTGTTTCATGTTTTCCACCTACAATATTAATTTAATAATTTCATTTACAC
*
66507 AAAAAATTATTTGATTGTTTTGATATTTTATAAAATATTGTTTAGAATTTAAATTTAACAATATT
131 AAAAAATTATTTGATTGTTTTGATATTTTATAAAATATTATTTAGAATTTAAATTTAACAATATT
66572 AACCAAAGATAATAATAAATATGTAATATATATGTTTATTGTTTTTAATTTAATAATAATATATA
196 AACCAAAGATAATAATAAATATGTAATATATATGTTTATTGTTTTTAATTTAATAATAATATATA
* * *
66637 TCGTAACGTAAAAAATAAATCATTAGACGTCAATAATTACTAAATTAATATATTAAAACTCACTC
261 CCGTAACGTAAAAAATAAATCATTAGACGCCAATAATTACTAAATTAATATCTTAAAACTCACTC
66702 AAAAGATAACCTTAAATTAATGTTTTCCACAGTGAAAAAAGTATGGACACTTTTATAAAAAGGAT
326 AAAAGATAACCTTAAATTAATGTTTTCCACAGTGAAAAAAGTATGGACACTTTTATAAAAAGGAT
66767 AGATACTTTACAATATAAGCACTACCTATTACATTATATAAACGCTACCTATTACATTATATAAG
391 AGATACTTTACAATATAAGCACTACCTATTACATTATATAAACGCTACCTATTACATTATATAAG
66832 C-ACTACCTATTACATCATATTTTTACCTATTATA
456 CGA-TACCTATTACATCATATTTTTACCTATTATA
*
66866 TTGAAAGTGTCCATACTTTTTATAAAAATGATCGATACTTTTTTTAAAGTTATGTAATTTATGTT
1 TTGAAAGTGTCCATACTTTTTATAAAAAAGATCGATACTTTTTTTAAAGTTATGTAATTTATGTT
66931 TCAATTTTTTTAATAGTGTTTCATGTTTTCCACCTACAATATTAATTTAATAATTTCATTTACAC
66 TCAATTTTTTTAATAGTGTTTCATGTTTTCCACCTACAATATTAATTTAATAATTTCATTTACAC
*
66996 AAAAAATTATTTGATTGTTTTGATATTTTATAAAATATTATTTAGAAGTTAAATTTAACAATATT
131 AAAAAATTATTTGATTGTTTTGATATTTTATAAAATATTATTTAGAATTTAAATTTAACAATATT
*
67061 AACCAAAGATAATAATAAATATGTAATATATATGTTTATTTTTTTTAATTTAATAATAATATATA
196 AACCAAAGATAATAATAAATATGTAATATATATGTTTATTGTTTTTAATTTAATAATAATATATA
* *
67126 TCGTAACGTAAAAAATAAATCATTAGACGCCTATAATTACTAAATTAATATCTTAAAACTCACTC
261 CCGTAACGTAAAAAATAAATCATTAGACGCCAATAATTACTAAATTAATATCTTAAAACTCACTC
67191 AAAAGATAACCTTAAATTAATGTTTTCCACAGTGAAAAAAGTATGGACACTTTTATAAAAAGGAT
326 AAAAGATAACCTTAAATTAATGTTTTCCACAGTGAAAAAAGTATGGACACTTTTATAAAAAGGAT
67256 AGATACTTTAC-ATATAAGCACTACCTATTACATTATATAAACGCTACCTATTACATTATATAAG
391 AGATACTTTACAATATAAGCACTACCTATTACATTATATAAACGCTACCTATTACATTATATAAG
* *
67320 TGATACCTATTACATCATATTTTTACCTATTAAA
456 CGATACCTATTACATCATATTTTTACCTATTATA
*
67354 TTGAAAGTGTCCATACTTTTTATAAAAAAGATCGATATTTTTTTTAAAGTTATGTAATTTATGTT
1 TTGAAAGTGTCCATACTTTTTATAAAAAAGATCGATACTTTTTTTAAAGTTATGTAATTTATGTT
67419 TCAATTTTTTTAATAGTGTTTCATGTTTTCCACCTACAATATTAATTTAATAATTTCATTTACAC
66 TCAATTTTTTTAATAGTGTTTCATGTTTTCCACCTACAATATTAATTTAATAATTTCATTTACAC
*
67484 -AAAAATTATTTGATTGTTTTGATATTTTATAAAATATTATTTAGAATTTAAAATTAACAATATT
131 AAAAAATTATTTGATTGTTTTGATATTTTATAAAATATTATTTAGAATTTAAATTTAACAATATT
* *
67548 AACCAAATATAATAAT-AA-ATGT-A-ATATATGTTTATTATTTTTAATTTAATAATAATATATA
196 AACCAAAGATAATAATAAATATGTAATATATATGTTTATTGTTTTTAATTTAATAATAATATATA
* *
67609 CCGCAACGTAAAAAATAAATCATTAGACG-TATATAATTACTAAATTAATATCTTAAAACTCACT
261 CCGTAACGTAAAAAATAAATCATTAGACGCCA-ATAATTACTAAATTAATATCTTAAAACTCACT
67673 CAAAAGATAACCTTAAATTAATGTTTTCCACAGTGAAAAAAGTATGGACACTTTTATAAAAAAGG
325 CAAAAGATAACCTTAAATTAATGTTTTCCACAGTGAAAAAAGTATGGACACTTTTAT-AAAAAGG
67738 ATAGATACTTTACAATATAAG------------C---------A--CTACCTATTACATTATATA
389 ATAGATACTTTACAATATAAGCACTACCTATTACATTATATAAACGCTACCTATTACATTATATA
67780 AGCGATACCTATTACATCATATTTTTACCTATTATA
454 AGCGATACCTATTACATCATATTTTTACCTATTATA
67816 TTGAAAGTGTCCATACTTTTTATAAAAAAGATCGATACTTTTTTTAAAGTTATGTAATTTATGTT
1 TTGAAAGTGTCCATACTTTTTATAAAAAAGATCGATACTTTTTTTAAAGTTATGTAATTTATGTT
67881 TCAATTTTTTTAATAGTGTTTCATGTTTTCCACCTACAATATTAATTTAATAATTTCATTTACAC
66 TCAATTTTTTTAATAGTGTTTCATGTTTTCCACCTACAATATTAATTTAATAATTTCATTTACAC
* *
67946 AAAAAATTATTTGATTATTTTGATATTTTATAAAATATTATTTAGAATTTAAAATTAACAATATT
131 AAAAAATTATTTGATTGTTTTGATATTTTATAAAATATTATTTAGAATTTAAATTTAACAATATT
*
68011 AACCAAATATAATAATAAATATGTAATATATATGTTTATTGTTTTTAATTTAATAAT-A-ATATA
196 AACCAAAGATAATAATAAATATGTAATATATATGTTTATTGTTTTTAATTTAATAATAATATATA
*
68074 CCGTAA--TATAAAAATAAATCATTAGACGCCTATAATTACTAAATTAATATCTTAAAACTCACT
261 CCGTAACGTA-AAAAATAAATCATTAGACGCCAATAATTACTAAATTAATATCTTAAAACTCACT
* *
68137 CAAAAGATAACATTAAATTAATGTTTTCCACAGTGAAAAAAGTATGGACGCTTTTATAAAAAGGA
325 CAAAAGATAACCTTAAATTAATGTTTTCCACAGTGAAAAAAGTATGGACACTTTTATAAAAAGGA
* *
68202 TATATACTTTACAATATAAGTACTACCTATTACATTATATAAACGCTACCTATTACATTATATAA
390 TAGATACTTTACAATATAAGCACTACCTATTACATTATATAAACGCTACCTATTACATTATATAA
*
68267 GCGCTACCTATTACATCATATTTTTACCTATTATA
455 GCGATACCTATTACATCATATTTTTACCTATTATA
* *
68302 TTGAAAGTGTCCATACTTTTTATAAAAAGGATCGATACTTTTTTTAAAGTTATATAATTTATGTT
1 TTGAAAGTGTCCATACTTTTTATAAAAAAGATCGATACTTTTTTTAAAGTTATGTAATTTATGTT
*
68367 TCAATTTTTTTAATAGTATTTCATGTTTTCCACCTACAATATTAATTTAATAATTTCATTTACAC
66 TCAATTTTTTTAATAGTGTTTCATGTTTTCCACCTACAATATTAATTTAATAATTTCATTTACAC
68432 AAAAAATTATTTGATTGTTTTGATATTTTATAAAATATTATTTAGAATTTAAATTTAACAATATT
131 AAAAAATTATTTGATTGTTTTGATATTTTATAAAATATTATTTAGAATTTAAATTTAACAATATT
* * *
68497 AACAAAAAATAATAATAAATATGTAATATATATGTTTATTGTTTTTAATTTAATAATAATATTTA
196 AACCAAAGATAATAATAAATATGTAATATATATGTTTATTGTTTTTAATTTAATAATAATATATA
* * *
68562 CCGCAACGT-AAAAATAAATCATTAGACGCCTATAATTACTAAATTAATATTTTAAAACTCACTC
261 CCGTAACGTAAAAAATAAATCATTAGACGCCAATAATTACTAAATTAATATCTTAAAACTCACTC
** * *
68626 AAAAGATAATTTTAAATTAATGTTTTCCACAATGAAAAAAGTATGGACACTTTTATAAAAAGAAT
326 AAAAGATAACCTTAAATTAATGTTTTCCACAGTGAAAAAAGTATGGACACTTTTATAAAAAGGAT
*
68691 AGATACTTTACAATATAAACACTACCTATTACA-T-TAT--A---TA---A--AC---------G
391 AGATACTTTACAATATAAGCACTACCTATTACATTATATAAACGCTACCTATTACATTATATAAG
68735 C--TACCTATTACATCATATTTTTACCTATTATA
456 CGATACCTATTACATCATATTTTTACCTATTATA
* *
68767 TTGAAAGTGTCCATACTTTTTATAAAAATGATCAATACTTTTTTTAAAGTTATGTAATTTATGTT
1 TTGAAAGTGTCCATACTTTTTATAAAAAAGATCGATACTTTTTTTAAAGTTATGTAATTTATGTT
*
68832 TCAA-TTTTTTAATAGTGTTTCATGTTTTCCACCTACAATATTAATTTAATAATTTCATTTGCAC
66 TCAATTTTTTTAATAGTGTTTCATGTTTTCCACCTACAATATTAATTTAATAATTTCATTTACAC
68896 AAAAAATTATTTGATTGTTTTGATATTTTATAAAATATTATTTAGAATTTAAATTTAACAATATT
131 AAAAAATTATTTGATTGTTTTGATATTTTATAAAATATTATTTAGAATTTAAATTTAACAATATT
* *
68961 AACCAAAGATAATAATAAATATGTAATATATATGTTTATTTTTTTTAATTTAATGATAATATATA
196 AACCAAAGATAATAATAAATATGTAATATATATGTTTATTGTTTTTAATTTAATAATAATATATA
* ** *
69026 CCGTAACATAAAAAATAAATCATTAGA-TACATATAATTACTAAATTGATATCTTAAAACTCACT
261 CCGTAACGTAAAAAATAAATCATTAGACGCCA-ATAATTACTAAATTAATATCTTAAAACTCACT
* *
69090 CAAAAGATAACCTTAAATTAATGTTTTCCACAGTGAAAAAAATATGGACACTTTTATAAAAATGA
325 CAAAAGATAACCTTAAATTAATGTTTTCCACAGTGAAAAAAGTATGGACACTTTTATAAAAAGGA
69155 TAGATACTTTACAATATAAGCACTACCTATTACATTATATAAACGCTACCTATTACATTATATAA
390 TAGATACTTTACAATATAAGCACTACCTATTACATTATATAAACGCTACCTATTACATTATATAA
* *
69220 GCGCTACCTATTACATCATATTTTTACCCATTATA
455 GCGATACCTATTACATCATATTTTTACCTATTATA
* *
69255 TTGAAAGTGTCTATACTTTTTATAAAAAGGATCGATACTTTTTTTAAAAGTTATGTAATTTATGT
1 TTGAAAGTGTCCATACTTTTTATAAAAAAGATCGATACTTTTTTT-AAAGTTATGTAATTTATGT
*
69320 TTCAATTTTTTTTAACAGTGTTTCATGTTTTCCACCTACAATATTAATTTAATAATTTCATTTAC
65 TTCAA-TTTTTTTAATAGTGTTTCATGTTTTCCACCTACAATATTAATTTAATAATTTCATTTAC
*
69385 ACAAAAAATTATTTGATTGTTTTGATATTTTATAAAATATTATTTAGTATTTAAATTTAACAATA
129 ACAAAAAATTATTTGATTGTTTTGATATTTTATAAAATATTATTTAGAATTTAAATTTAACAATA
69450 TTAACCAAAGATAATAATAAATATGTAATATATAT-TTTATTGTTTTTAATTTAATAATAATATA
194 TTAACCAAAGATAATAATAAATATGTAATATATATGTTTATTGTTTTTAATTTAATAATAATATA
* **
69514 TACTGTAACGTAAAAAATAAATCATTAGACGCTTATAATTACTAAATTAATATCTTAAAACTCAC
259 TACCGTAACGTAAAAAATAAATCATTAGACGCCAATAATTACTAAATTAATATCTTAAAACTCAC
* * *
69579 ACAAAAGATAACCTTAAATTAATATTTCCCACAGTGAAAAAAGTATGGACACTTTTATAAAAAGG
324 TCAAAAGATAACCTTAAATTAATGTTTTCCACAGTGAAAAAAGTATGGACACTTTTATAAAAAGG
69644 ATAGATACTTTACAATATAA
389 ATAGATACTTTACAATATAA
69664 CATGTAAAAA
Statistics
Matches: 3104, Mismatches: 110, Indels: 141
0.93 0.03 0.04
Matches are distributed among these distances:
462 182 0.06
463 108 0.03
464 300 0.10
465 250 0.08
466 3 0.00
467 34 0.01
469 1 0.00
472 2 0.00
473 1 0.00
475 2 0.00
476 2 0.00
477 2 0.00
478 1 0.00
481 2 0.00
483 153 0.05
484 163 0.05
485 25 0.01
486 308 0.10
487 80 0.03
488 437 0.14
489 728 0.23
490 165 0.05
491 155 0.05
ACGTcount: A:0.41, C:0.11, G:0.07, T:0.41
Consensus pattern (489 bp):
TTGAAAGTGTCCATACTTTTTATAAAAAAGATCGATACTTTTTTTAAAGTTATGTAATTTATGTT
TCAATTTTTTTAATAGTGTTTCATGTTTTCCACCTACAATATTAATTTAATAATTTCATTTACAC
AAAAAATTATTTGATTGTTTTGATATTTTATAAAATATTATTTAGAATTTAAATTTAACAATATT
AACCAAAGATAATAATAAATATGTAATATATATGTTTATTGTTTTTAATTTAATAATAATATATA
CCGTAACGTAAAAAATAAATCATTAGACGCCAATAATTACTAAATTAATATCTTAAAACTCACTC
AAAAGATAACCTTAAATTAATGTTTTCCACAGTGAAAAAAGTATGGACACTTTTATAAAAAGGAT
AGATACTTTACAATATAAGCACTACCTATTACATTATATAAACGCTACCTATTACATTATATAAG
CGATACCTATTACATCATATTTTTACCTATTATA
Found at i:67295 original size:23 final size:23
Alignment explanation
Indices: 67267--67339 Score: 94
Period size: 23 Copynumber: 3.2 Consensus size: 23
67257 GATACTTTAC
67267 ATATAAGCACTACCTATTACATT
1 ATATAAGCACTACCTATTACATT
* *
67290 ATATAAACGCTACCTATTACATT
1 ATATAAGCACTACCTATTACATT
* *
67313 ATATAAGTGA-TACCTATTACATC
1 ATATAAG-CACTACCTATTACATT
67336 ATAT
1 ATAT
67340 TTTTACCTAT
Statistics
Matches: 43, Mismatches: 6, Indels: 2
0.84 0.12 0.04
Matches are distributed among these distances:
23 43 1.00
ACGTcount: A:0.40, C:0.19, G:0.05, T:0.36
Consensus pattern (23 bp):
ATATAAGCACTACCTATTACATT
Found at i:67782 original size:23 final size:23
Alignment explanation
Indices: 67752--67801 Score: 75
Period size: 23 Copynumber: 2.2 Consensus size: 23
67742 ATACTTTACA
*
67752 ATATAAGC-ACTACCTATTACATT
1 ATATAAGCGA-TACCTATTACATC
67775 ATATAAGCGATACCTATTACATC
1 ATATAAGCGATACCTATTACATC
67798 ATAT
1 ATAT
67802 TTTTACCTAT
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
23 24 0.96
24 1 0.04
ACGTcount: A:0.40, C:0.20, G:0.06, T:0.34
Consensus pattern (23 bp):
ATATAAGCGATACCTATTACATC
Found at i:68240 original size:21 final size:21
Alignment explanation
Indices: 68210--68282 Score: 58
Period size: 23 Copynumber: 3.3 Consensus size: 21
68200 GATATATACT
* *
68210 TTACAATATAAGTACTACCTA
1 TTACATTATAAGAACTACCTA
68231 TTACATTATATA-AACGCTACCTA
1 TTACATTATA-AGAA--CTACCTA
**
68254 TTACATTATATAAGCGCTACCTA
1 TTACA-T-TATAAGAACTACCTA
68277 TTACAT
1 TTACAT
68283 CATATTTTTA
Statistics
Matches: 42, Mismatches: 4, Indels: 11
0.74 0.07 0.19
Matches are distributed among these distances:
21 10 0.24
22 2 0.05
23 24 0.57
24 2 0.05
25 4 0.10
ACGTcount: A:0.38, C:0.21, G:0.05, T:0.36
Consensus pattern (21 bp):
TTACATTATAAGAACTACCTA
Found at i:68250 original size:23 final size:23
Alignment explanation
Indices: 68224--68287 Score: 110
Period size: 23 Copynumber: 2.8 Consensus size: 23
68214 AATATAAGTA
68224 CTACCTATTACATTATATAAACG
1 CTACCTATTACATTATATAAACG
*
68247 CTACCTATTACATTATATAAGCG
1 CTACCTATTACATTATATAAACG
*
68270 CTACCTATTACATCATAT
1 CTACCTATTACATTATAT
68288 TTTTACCTAT
Statistics
Matches: 39, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
23 39 1.00
ACGTcount: A:0.36, C:0.23, G:0.05, T:0.36
Consensus pattern (23 bp):
CTACCTATTACATTATATAAACG
Found at i:68553 original size:950 final size:953
Alignment explanation
Indices: 65892--69663 Score: 6394
Period size: 950 Copynumber: 3.9 Consensus size: 953
65882 TTATAATATG
* * * *
65892 TTGAAAGTATTCATACTTTTTTATAAAAAAGATCGATATTTTTTTTAAAGTTATATAATTTATGT
1 TTGAAAGTGTCCATAC-TTTTTATAAAAAAGATCGATACTTTTTTTAAAGTTATGTAATTTATGT
*
65957 TTCAATTTTTTTAATAGTGTTTCATGTTTTCCACCTACAATATTAATTTAATAATTTCATTTGCA
65 TTCAATTTTTTTAATAGTGTTTCATGTTTTCCACCTACAATATTAATTTAATAATTTCATTTACA
66022 CAAAAAATTATTTGATTGTTTTGATATTTTAT--AA-A--ATTTAGAATTTAAATTTAACAATAT
130 CAAAAAATTATTTGATTGTTTTGATATTTTATAAAATATTATTTAGAATTTAAATTTAACAATAT
* *
66082 TAACCAAATATAATAATAAATATGTAATATATATGTTTTTTGTTTTTAATTTAATAATAATATAT
195 TAACCAAAGATAATAATAAATATGTAATATATATGTTTATTGTTTTTAATTTAATAATAATATAT
* * *
66147 ATCGTAACGTAAAAAATAAATCATTAGACGCCAATAATTACTAAATTAATATATTAAAACTCACT
260 ACCGTAAC-TAAAAAATAAATCATTAGACGCCTATAATTACTAAATTAATATCTTAAAACTCACT
* *
66212 CAAAAGATAACCTTAAATTAATGTTTTCCACAATGAAAAAAGTATGGACACTTTTATAAAAAAGA
324 CAAAAGATAACCTTAAATTAATGTTTTCCACAGTGAAAAAAGTATGGACACTTTTATAAAAAGGA
* *
66277 TAGATACTTTACAATATAAGCATTACCTATTACATTATATAAATGCTACCTATTACATTATATAA
389 TAGATACTTTACAATATAAGCACTACCTATTACATTATATAAACGCTACCTATTACATTATATAA
* *
66342 GCGATACCTATTACATTATATTTTTACCTATTATATTGAAAGTGTCCATACTTTTTATAAAAATG
454 GCGATACCTATTACATCATATTTTTACCTATTATATTGAAAGTGTCCATACTTTTTATAAAAAGG
66407 ATCGATACTTTTTTTAAAGTTATGTAATTTATGTTTCAATTTTTTTAACAGTGTTTCATGTTTTC
519 ATCGATACTTTTTTTAAAGTTATGTAATTTATGTTTCAATTTTTTTAACAGTGTTTCATGTTTTC
66472 CACCTACAATATTAATTTAATAATTTCATTTACACAAAAAATTATTTGATTGTTTTGATATTTTA
584 CACCTACAATATTAATTTAATAATTTCATTTACACAAAAAATTATTTGATTGTTTTGATATTTTA
*
66537 TAAAATATTGTTTAGAATTTAAATTTAACAATATTAACCAAAGATAATAATAAATATGTAATATA
649 TAAAATATTATTTAGAATTTAAATTTAACAATATTAACCAAAGATAATAATAAATATGTAATATA
* *
66602 TATGTTTATTGTTTTTAATTTAATAATAATATATATCGTAACGTAAAAAATAAATCATTAGACGT
714 TATGTTTATTGTTTTTAATTT-ATAATAATATATACCGCAACGTAAAAAATAAATCATTAGACGT
*
66667 CA-ATAATTACTAAATTAATATATTAAAACTCACTCAAAAGATAACCTTAAATTAATGTTTTCCA
778 -ATATAATTACTAAATTAATATCTTAAAACTCACTCAAAAGATAACCTTAAATTAATGTTTTCCA
66731 CAGTGAAAAAAGTATGGACACTTTTATAAAAAGGATAGATACTTTACAATATAAGCACTACCTAT
842 CAGTGAAAAAAGTATGGACACTTTTATAAAAAGGATAGATACTTTACAATATAAGCACTACCTAT
66796 TACATTATATAAACGCTACCTATTACATTATATAAGCACTACCTATTACATCATATTTTTACCTA
907 TACATTATAT-AA-G----------C---------G-A-TACCTATTACATCATATTTTTACCTA
66861 TTATA
949 TTATA
*
66866 TTGAAAGTGTCCATACTTTTTATAAAAATGATCGATACTTTTTTTAAAGTTATGTAATTTATGTT
1 TTGAAAGTGTCCATACTTTTTATAAAAAAGATCGATACTTTTTTTAAAGTTATGTAATTTATGTT
66931 TCAATTTTTTTAATAGTGTTTCATGTTTTCCACCTACAATATTAATTTAATAATTTCATTTACAC
66 TCAATTTTTTTAATAGTGTTTCATGTTTTCCACCTACAATATTAATTTAATAATTTCATTTACAC
*
66996 AAAAAATTATTTGATTGTTTTGATATTTTATAAAATATTATTTAGAAGTTAAATTTAACAATATT
131 AAAAAATTATTTGATTGTTTTGATATTTTATAAAATATTATTTAGAATTTAAATTTAACAATATT
*
67061 AACCAAAGATAATAATAAATATGTAATATATATGTTTATTTTTTTTAATTTAATAATAATATATA
196 AACCAAAGATAATAATAAATATGTAATATATATGTTTATTGTTTTTAATTTAATAATAATATATA
*
67126 TCGTAACGTAAAAAATAAATCATTAGACGCCTATAATTACTAAATTAATATCTTAAAACTCACTC
261 CCGTAAC-TAAAAAATAAATCATTAGACGCCTATAATTACTAAATTAATATCTTAAAACTCACTC
67191 AAAAGATAACCTTAAATTAATGTTTTCCACAGTGAAAAAAGTATGGACACTTTTATAAAAAGGAT
325 AAAAGATAACCTTAAATTAATGTTTTCCACAGTGAAAAAAGTATGGACACTTTTATAAAAAGGAT
67256 AGATACTTTAC-ATATAAGCACTACCTATTACATTATATAAACGCTACCTATTACATTATATAAG
390 AGATACTTTACAATATAAGCACTACCTATTACATTATATAAACGCTACCTATTACATTATATAAG
* * *
67320 TGATACCTATTACATCATATTTTTACCTATTAAATTGAAAGTGTCCATACTTTTTATAAAAAAGA
455 CGATACCTATTACATCATATTTTTACCTATTATATTGAAAGTGTCCATACTTTTTATAAAAAGGA
* *
67385 TCGATATTTTTTTTAAAGTTATGTAATTTATGTTTCAATTTTTTTAATAGTGTTTCATGTTTTCC
520 TCGATACTTTTTTTAAAGTTATGTAATTTATGTTTCAATTTTTTTAACAGTGTTTCATGTTTTCC
67450 ACCTACAATATTAATTTAATAATTTCATTTACAC-AAAAATTATTTGATTGTTTTGATATTTTAT
585 ACCTACAATATTAATTTAATAATTTCATTTACACAAAAAATTATTTGATTGTTTTGATATTTTAT
* *
67514 AAAATATTATTTAGAATTTAAAATTAACAATATTAACCAAATATAATAAT-AA-ATGT-A-ATAT
650 AAAATATTATTTAGAATTTAAATTTAACAATATTAACCAAAGATAATAATAAATATGTAATATAT
*
67575 ATGTTTATTATTTTTAATTTAATAATAATATATACCGCAACGTAAAAAATAAATCATTAGACGTA
715 ATGTTTATTGTTTTTAATTT-ATAATAATATATACCGCAACGTAAAAAATAAATCATTAGACGTA
67640 TATAATTACTAAATTAATATCTTAAAACTCACTCAAAAGATAACCTTAAATTAATGTTTTCCACA
779 TATAATTACTAAATTAATATCTTAAAACTCACTCAAAAGATAACCTTAAATTAATGTTTTCCACA
67705 GTGAAAAAAGTATGGACACTTTTATAAAAAAGGATAGATACTTTACAATATAAGCACTACCTATT
844 GTGAAAAAAGTATGGACACTTTTAT-AAAAAGGATAGATACTTTACAATATAAGCACTACCTATT
67770 ACATTATATAAGCGATACCTATTACATCATATTTTTACCTATTATA
908 ACATTATATAAGCGATACCTATTACATCATATTTTTACCTATTATA
67816 TTGAAAGTGTCCATACTTTTTATAAAAAAGATCGATACTTTTTTTAAAGTTATGTAATTTATGTT
1 TTGAAAGTGTCCATACTTTTTATAAAAAAGATCGATACTTTTTTTAAAGTTATGTAATTTATGTT
67881 TCAATTTTTTTAATAGTGTTTCATGTTTTCCACCTACAATATTAATTTAATAATTTCATTTACAC
66 TCAATTTTTTTAATAGTGTTTCATGTTTTCCACCTACAATATTAATTTAATAATTTCATTTACAC
* *
67946 AAAAAATTATTTGATTATTTTGATATTTTATAAAATATTATTTAGAATTTAAAATTAACAATATT
131 AAAAAATTATTTGATTGTTTTGATATTTTATAAAATATTATTTAGAATTTAAATTTAACAATATT
*
68011 AACCAAATATAATAATAAATATGTAATATATATGTTTATTGTTTTTAATTTAATAAT-A-ATATA
196 AACCAAAGATAATAATAAATATGTAATATATATGTTTATTGTTTTTAATTTAATAATAATATATA
68074 CCGTAA-TATAAAAATAAATCATTAGACGCCTATAATTACTAAATTAATATCTTAAAACTCACTC
261 CCGTAACTA-AAAAATAAATCATTAGACGCCTATAATTACTAAATTAATATCTTAAAACTCACTC
* *
68138 AAAAGATAACATTAAATTAATGTTTTCCACAGTGAAAAAAGTATGGACGCTTTTATAAAAAGGAT
325 AAAAGATAACCTTAAATTAATGTTTTCCACAGTGAAAAAAGTATGGACACTTTTATAAAAAGGAT
* *
68203 ATATACTTTACAATATAAGTACTACCTATTACATTATATAAACGCTACCTATTACATTATATAAG
390 AGATACTTTACAATATAAGCACTACCTATTACATTATATAAACGCTACCTATTACATTATATAAG
*
68268 CGCTACCTATTACATCATATTTTTACCTATTATATTGAAAGTGTCCATACTTTTTATAAAAAGGA
455 CGATACCTATTACATCATATTTTTACCTATTATATTGAAAGTGTCCATACTTTTTATAAAAAGGA
* * *
68333 TCGATACTTTTTTTAAAGTTATATAATTTATGTTTCAATTTTTTTAATAGTATTTCATGTTTTCC
520 TCGATACTTTTTTTAAAGTTATGTAATTTATGTTTCAATTTTTTTAACAGTGTTTCATGTTTTCC
68398 ACCTACAATATTAATTTAATAATTTCATTTACACAAAAAATTATTTGATTGTTTTGATATTTTAT
585 ACCTACAATATTAATTTAATAATTTCATTTACACAAAAAATTATTTGATTGTTTTGATATTTTAT
* *
68463 AAAATATTATTTAGAATTTAAATTTAACAATATTAACAAAAAATAATAATAAATATGTAATATAT
650 AAAATATTATTTAGAATTTAAATTTAACAATATTAACCAAAGATAATAATAAATATGTAATATAT
* **
68528 ATGTTTATTGTTTTTAATTTAATAATAATATTTACCGCAACGT-AAAAATAAATCATTAGACGCC
715 ATGTTTATTGTTTTTAATTT-ATAATAATATATACCGCAACGTAAAAAATAAATCATTAGACGTA
* **
68592 TATAATTACTAAATTAATATTTTAAAACTCACTCAAAAGATAATTTTAAATTAATGTTTTCCACA
779 TATAATTACTAAATTAATATCTTAAAACTCACTCAAAAGATAACCTTAAATTAATGTTTTCCACA
* * *
68657 ATGAAAAAAGTATGGACACTTTTATAAAAAGAATAGATACTTTACAATATAAACACTACCTATTA
844 GTGAAAAAAGTATGGACACTTTTATAAAAAGGATAGATACTTTACAATATAAGCACTACCTATTA
* *
68722 CATTATATAAACGCTACCTATTACATCATATTTTTACCTATTATA
909 CATTATATAAGCGATACCTATTACATCATATTTTTACCTATTATA
* *
68767 TTGAAAGTGTCCATACTTTTTATAAAAATGATCAATACTTTTTTTAAAGTTATGTAATTTATGTT
1 TTGAAAGTGTCCATACTTTTTATAAAAAAGATCGATACTTTTTTTAAAGTTATGTAATTTATGTT
*
68832 TCAA-TTTTTTAATAGTGTTTCATGTTTTCCACCTACAATATTAATTTAATAATTTCATTTGCAC
66 TCAATTTTTTTAATAGTGTTTCATGTTTTCCACCTACAATATTAATTTAATAATTTCATTTACAC
68896 AAAAAATTATTTGATTGTTTTGATATTTTATAAAATATTATTTAGAATTTAAATTTAACAATATT
131 AAAAAATTATTTGATTGTTTTGATATTTTATAAAATATTATTTAGAATTTAAATTTAACAATATT
* *
68961 AACCAAAGATAATAATAAATATGTAATATATATGTTTATTTTTTTTAATTTAATGATAATATATA
196 AACCAAAGATAATAATAAATATGTAATATATATGTTTATTGTTTTTAATTTAATAATAATATATA
** * *
69026 CCGTAACATAAAAAATAAATCATTAGATACATATAATTACTAAATTGATATCTTAAAACTCACTC
261 CCGTAAC-TAAAAAATAAATCATTAGACGCCTATAATTACTAAATTAATATCTTAAAACTCACTC
* *
69091 AAAAGATAACCTTAAATTAATGTTTTCCACAGTGAAAAAAATATGGACACTTTTATAAAAATGAT
325 AAAAGATAACCTTAAATTAATGTTTTCCACAGTGAAAAAAGTATGGACACTTTTATAAAAAGGAT
69156 AGATACTTTACAATATAAGCACTACCTATTACATTATATAAACGCTACCTATTACATTATATAAG
390 AGATACTTTACAATATAAGCACTACCTATTACATTATATAAACGCTACCTATTACATTATATAAG
* * *
69221 CGCTACCTATTACATCATATTTTTACCCATTATATTGAAAGTGTCTATACTTTTTATAAAAAGGA
455 CGATACCTATTACATCATATTTTTACCTATTATATTGAAAGTGTCCATACTTTTTATAAAAAGGA
69286 TCGATACTTTTTTTAAAAGTTATGTAATTTATGTTTCAATTTTTTTTAACAGTGTTTCATGTTTT
520 TCGATACTTTTTTT-AAAGTTATGTAATTTATGTTTCAA-TTTTTTTAACAGTGTTTCATGTTTT
69351 CCACCTACAATATTAATTTAATAATTTCATTTACACAAAAAATTATTTGATTGTTTTGATATTTT
583 CCACCTACAATATTAATTTAATAATTTCATTTACACAAAAAATTATTTGATTGTTTTGATATTTT
*
69416 ATAAAATATTATTTAGTATTTAAATTTAACAATATTAACCAAAGATAATAATAAATATGTAATAT
648 ATAAAATATTATTTAGAATTTAAATTTAACAATATTAACCAAAGATAATAATAAATATGTAATAT
* *
69481 ATAT-TTTATTGTTTTTAATTTAATAATAATATATACTGTAACGTAAAAAATAAATCATTAGACG
713 ATATGTTTATTGTTTTTAATTT-ATAATAATATATACCGCAACGTAAAAAATAAATCATTAGACG
* * *
69545 CT-TATAATTACTAAATTAATATCTTAAAACTCACACAAAAGATAACCTTAAATTAATATTTCCC
777 -TATATAATTACTAAATTAATATCTTAAAACTCACTCAAAAGATAACCTTAAATTAATGTTTTCC
69609 ACAGTGAAAAAAGTATGGACACTTTTATAAAAAGGATAGATACTTTACAATATAA
841 ACAGTGAAAAAAGTATGGACACTTTTATAAAAAGGATAGATACTTTACAATATAA
69664 CATGTAAAAA
Statistics
Matches: 2676, Mismatches: 100, Indels: 63
0.94 0.04 0.02
Matches are distributed among these distances:
946 2 0.00
947 128 0.05
948 219 0.08
949 78 0.03
950 455 0.17
951 154 0.06
952 118 0.04
953 297 0.11
954 62 0.02
955 282 0.11
961 1 0.00
971 2 0.00
972 155 0.06
973 190 0.07
974 18 0.01
975 4 0.00
976 78 0.03
977 209 0.08
978 224 0.08
ACGTcount: A:0.41, C:0.11, G:0.07, T:0.41
Consensus pattern (953 bp):
TTGAAAGTGTCCATACTTTTTATAAAAAAGATCGATACTTTTTTTAAAGTTATGTAATTTATGTT
TCAATTTTTTTAATAGTGTTTCATGTTTTCCACCTACAATATTAATTTAATAATTTCATTTACAC
AAAAAATTATTTGATTGTTTTGATATTTTATAAAATATTATTTAGAATTTAAATTTAACAATATT
AACCAAAGATAATAATAAATATGTAATATATATGTTTATTGTTTTTAATTTAATAATAATATATA
CCGTAACTAAAAAATAAATCATTAGACGCCTATAATTACTAAATTAATATCTTAAAACTCACTCA
AAAGATAACCTTAAATTAATGTTTTCCACAGTGAAAAAAGTATGGACACTTTTATAAAAAGGATA
GATACTTTACAATATAAGCACTACCTATTACATTATATAAACGCTACCTATTACATTATATAAGC
GATACCTATTACATCATATTTTTACCTATTATATTGAAAGTGTCCATACTTTTTATAAAAAGGAT
CGATACTTTTTTTAAAGTTATGTAATTTATGTTTCAATTTTTTTAACAGTGTTTCATGTTTTCCA
CCTACAATATTAATTTAATAATTTCATTTACACAAAAAATTATTTGATTGTTTTGATATTTTATA
AAATATTATTTAGAATTTAAATTTAACAATATTAACCAAAGATAATAATAAATATGTAATATATA
TGTTTATTGTTTTTAATTTATAATAATATATACCGCAACGTAAAAAATAAATCATTAGACGTATA
TAATTACTAAATTAATATCTTAAAACTCACTCAAAAGATAACCTTAAATTAATGTTTTCCACAGT
GAAAAAAGTATGGACACTTTTATAAAAAGGATAGATACTTTACAATATAAGCACTACCTATTACA
TTATATAAGCGATACCTATTACATCATATTTTTACCTATTATA
Found at i:68733 original size:23 final size:23
Alignment explanation
Indices: 68703--68752 Score: 82
Period size: 23 Copynumber: 2.2 Consensus size: 23
68693 ATACTTTACA
*
68703 ATATAAACACTACCTATTACATT
1 ATATAAACACTACCTATTACATC
*
68726 ATATAAACGCTACCTATTACATC
1 ATATAAACACTACCTATTACATC
68749 ATAT
1 ATAT
68753 TTTTACCTAT
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
23 25 1.00
ACGTcount: A:0.42, C:0.22, G:0.02, T:0.34
Consensus pattern (23 bp):
ATATAAACACTACCTATTACATC
Found at i:69203 original size:23 final size:23
Alignment explanation
Indices: 69168--69240 Score: 119
Period size: 23 Copynumber: 3.2 Consensus size: 23
69158 ATACTTTACA
*
69168 ATATAAGCACTACCTATTACATT
1 ATATAAGCGCTACCTATTACATT
*
69191 ATATAAACGCTACCTATTACATT
1 ATATAAGCGCTACCTATTACATT
*
69214 ATATAAGCGCTACCTATTACATC
1 ATATAAGCGCTACCTATTACATT
69237 ATAT
1 ATAT
69241 TTTTACCCAT
Statistics
Matches: 46, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
23 46 1.00
ACGTcount: A:0.38, C:0.22, G:0.05, T:0.34
Consensus pattern (23 bp):
ATATAAGCGCTACCTATTACATT
Found at i:72553 original size:21 final size:21
Alignment explanation
Indices: 72483--72562 Score: 67
Period size: 21 Copynumber: 3.7 Consensus size: 21
72473 ATAATTTACA
72483 CCGAAGTG-CCACATAATTGTC
1 CCGAAG-GACCACATAATTGTC
* * *
72504 CCAAAGGACCATATAGGTT-TGC
1 CCGAAGGACCACATA-ATTGT-C
72526 ACCGAAGTG-CCACATAATTGTC
1 -CCGAAG-GACCACATAATTGTC
72548 CCGAAGGACCACATA
1 CCGAAGGACCACATA
72563 GAACCCTCGA
Statistics
Matches: 46, Mismatches: 6, Indels: 14
0.70 0.09 0.21
Matches are distributed among these distances:
20 2 0.04
21 25 0.54
22 6 0.13
23 12 0.26
24 1 0.02
ACGTcount: A:0.33, C:0.28, G:0.20, T:0.20
Consensus pattern (21 bp):
CCGAAGGACCACATAATTGTC
Found at i:77457 original size:24 final size:24
Alignment explanation
Indices: 77425--77477 Score: 106
Period size: 24 Copynumber: 2.2 Consensus size: 24
77415 TTATACACTC
77425 GAGCGGTGTAGCGCACTTCAGGTT
1 GAGCGGTGTAGCGCACTTCAGGTT
77449 GAGCGGTGTAGCGCACTTCAGGTT
1 GAGCGGTGTAGCGCACTTCAGGTT
77473 GAGCG
1 GAGCG
77478 ATCGACTCAG
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 29 1.00
ACGTcount: A:0.17, C:0.21, G:0.40, T:0.23
Consensus pattern (24 bp):
GAGCGGTGTAGCGCACTTCAGGTT
Found at i:79364 original size:23 final size:23
Alignment explanation
Indices: 79302--79389 Score: 85
Period size: 23 Copynumber: 3.9 Consensus size: 23
79292 GCTCACATAA
79302 TTTGCACCGAAGTGCCACATA--
1 TTTGCACCGAAGTGCCACATAGG
* *
79323 ATTGTC-CTGAAG-GACCACATAGG
1 TTTG-CACCGAAGTG-CCACATAGG
* *
79346 TTTGCACCGAAGTGTCACAAAGG
1 TTTGCACCGAAGTGCCACATAGG
*
79369 TTTGCATCGAAGTGCCACATA
1 TTTGCACCGAAGTGCCACATA
79390 ATTGTCCTGA
Statistics
Matches: 52, Mismatches: 9, Indels: 10
0.73 0.13 0.14
Matches are distributed among these distances:
20 1 0.02
21 15 0.29
22 2 0.04
23 33 0.63
24 1 0.02
ACGTcount: A:0.30, C:0.24, G:0.23, T:0.24
Consensus pattern (23 bp):
TTTGCACCGAAGTGCCACATAGG
Found at i:82169 original size:38 final size:38
Alignment explanation
Indices: 82127--82206 Score: 110
Period size: 38 Copynumber: 2.1 Consensus size: 38
82117 ATCCATGATG
82127 AAAAAAAAG-GAATAAAAAGAATAAGAAAA-AAAAGAAAA
1 AAAAAAAAGTGAA-AAAAAGAA-AAGAAAAGAAAAGAAAA
* *
82165 AAAAAAGAGTGAAAAAAAGAAAAGAAAAGAAAAGAAAC
1 AAAAAAAAGTGAAAAAAAGAAAAGAAAAGAAAAGAAAA
82203 AAAA
1 AAAA
82207 GGTGAGTTTA
Statistics
Matches: 38, Mismatches: 2, Indels: 4
0.86 0.05 0.09
Matches are distributed among these distances:
37 7 0.18
38 28 0.74
39 3 0.08
ACGTcount: A:0.80, C:0.01, G:0.15, T:0.04
Consensus pattern (38 bp):
AAAAAAAAGTGAAAAAAAGAAAAGAAAAGAAAAGAAAA
Found at i:82198 original size:10 final size:10
Alignment explanation
Indices: 82141--82201 Score: 58
Period size: 10 Copynumber: 6.3 Consensus size: 10
82131 AAAAGGAATA
82141 AAAAGAATAAG
1 AAAAGAA-AAG
82152 AAAA-AAAAG
1 AAAAGAAAAG
82161 AAAA-AAAA-
1 AAAAGAAAAG
* *
82169 AAGAGTGAAA-
1 AAAAG-AAAAG
82179 AAAAGAAAAG
1 AAAAGAAAAG
82189 AAAAGAAAAG
1 AAAAGAAAAG
82199 AAA
1 AAA
82202 CAAAAGGTGA
Statistics
Matches: 43, Mismatches: 4, Indels: 7
0.80 0.07 0.13
Matches are distributed among these distances:
8 3 0.07
9 14 0.33
10 22 0.51
11 4 0.09
ACGTcount: A:0.80, C:0.00, G:0.16, T:0.03
Consensus pattern (10 bp):
AAAAGAAAAG
Found at i:82201 original size:15 final size:13
Alignment explanation
Indices: 82140--82197 Score: 53
Period size: 15 Copynumber: 4.1 Consensus size: 13
82130 AAAAAGGAAT
82140 AAAAAGAATAAGAAA
1 AAAAAGAA-AA-AAA
82155 AAAAAGAAAAAAA
1 AAAAAGAAAAAAA
*
82168 AAAGAGTGAAAAAAA
1 AAA-A-AGAAAAAAA
*
82183 GAAAAGAAAAGAAA
1 AAAAAGAAAA-AAA
82197 A
1 A
82198 GAAACAAAAG
Statistics
Matches: 36, Mismatches: 4, Indels: 7
0.77 0.09 0.15
Matches are distributed among these distances:
13 11 0.31
14 7 0.19
15 18 0.50
ACGTcount: A:0.81, C:0.00, G:0.16, T:0.03
Consensus pattern (13 bp):
AAAAAGAAAAAAA
Found at i:85194 original size:14 final size:14
Alignment explanation
Indices: 85175--85216 Score: 57
Period size: 14 Copynumber: 2.9 Consensus size: 14
85165 ACCTTATTCT
85175 TTTTCTTGTTCTTC
1 TTTTCTTGTTCTTC
**
85189 TTTTCTTCATCTTC
1 TTTTCTTGTTCTTC
85203 TTTTCTTTGTTCTT
1 TTTTC-TTGTTCTT
85217 TATCTTTTAC
Statistics
Matches: 23, Mismatches: 4, Indels: 1
0.82 0.14 0.04
Matches are distributed among these distances:
14 17 0.74
15 6 0.26
ACGTcount: A:0.02, C:0.21, G:0.05, T:0.71
Consensus pattern (14 bp):
TTTTCTTGTTCTTC
Found at i:87954 original size:3 final size:3
Alignment explanation
Indices: 87946--87981 Score: 54
Period size: 3 Copynumber: 11.7 Consensus size: 3
87936 ATATATAAAT
*
87946 TAA TAA TAA TAA TAA TAA TAAA TAC TAA TAA TAA TA
1 TAA TAA TAA TAA TAA TAA T-AA TAA TAA TAA TAA TA
87982 TAGACTATAT
Statistics
Matches: 30, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
3 27 0.90
4 3 0.10
ACGTcount: A:0.64, C:0.03, G:0.00, T:0.33
Consensus pattern (3 bp):
TAA
Found at i:87998 original size:16 final size:16
Alignment explanation
Indices: 87955--88001 Score: 58
Period size: 16 Copynumber: 2.8 Consensus size: 16
87945 TTAATAATAA
* *
87955 TAATAATAATAAATAC
1 TAATAATAATATAGAC
87971 TAATAATAATATAGAC
1 TAATAATAATATAGAC
87987 TATATAATATATATA
1 TA-ATAATA-ATATA
88002 TTTCAAAAAA
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
16 16 0.59
17 6 0.22
18 5 0.19
ACGTcount: A:0.57, C:0.04, G:0.02, T:0.36
Consensus pattern (16 bp):
TAATAATAATATAGAC
Found at i:88099 original size:32 final size:30
Alignment explanation
Indices: 88060--88216 Score: 124
Period size: 32 Copynumber: 5.0 Consensus size: 30
88050 TCAAAACTAT
88060 ATATTATATAGTTTTCAAAAATGATTTTAAAA
1 ATATTATATA-TTTTC-AAAATGATTTTAAAA
**
88092 ATATTATATAAGTTTTCAAAAATTTTTTTAAAA
1 ATATTATAT-A-TTTTC-AAAATGATTTTAAAA
* *
88125 CTATATTATAT-TTTTCTAAAATGCTTTT-TAA
1 --ATATTATATATTTTC-AAAATGATTTTAAAA
* *
88156 A-ACTATATATTTTCAAAATGATTTCAAAA
1 ATATTATATATTTTCAAAATGATTTTAAAA
*
88185 CTATATATTATAATTTTCAAAATG-TTTTAAAA
1 ATAT-TA-TAT-ATTTTCAAAATGATTTTAAAA
88217 CCTATATATT
Statistics
Matches: 103, Mismatches: 13, Indels: 18
0.77 0.10 0.13
Matches are distributed among these distances:
28 15 0.15
29 8 0.08
30 1 0.01
31 4 0.04
32 33 0.32
33 33 0.32
35 9 0.09
ACGTcount: A:0.43, C:0.06, G:0.04, T:0.46
Consensus pattern (30 bp):
ATATTATATATTTTCAAAATGATTTTAAAA
Found at i:88191 original size:27 final size:29
Alignment explanation
Indices: 88131--88193 Score: 87
Period size: 27 Copynumber: 2.3 Consensus size: 29
88121 AAAACTATAT
* *
88131 TATAT-TTTTCTAAAATGCTTTTTAAAAC
1 TATATATTTTCTAAAATGCATTTCAAAAC
88159 TATATATTTTC-AAAATG-ATTTCAAAAC
1 TATATATTTTCTAAAATGCATTTCAAAAC
88186 TATATATT
1 TATATATT
88194 ATAATTTTCA
Statistics
Matches: 32, Mismatches: 2, Indels: 3
0.86 0.05 0.08
Matches are distributed among these distances:
27 16 0.50
28 11 0.34
29 5 0.16
ACGTcount: A:0.40, C:0.10, G:0.03, T:0.48
Consensus pattern (29 bp):
TATATATTTTCTAAAATGCATTTCAAAAC
Found at i:88222 original size:33 final size:33
Alignment explanation
Indices: 88023--88320 Score: 214
Period size: 33 Copynumber: 8.9 Consensus size: 33
88013 ATATTTTTTT
*
88023 AACTATATATTAT-ATTTT--AAAAGGTTTTCAA
1 AACTATATATTATAATTTTCAAAAATGTTTT-AA
88054 AACTATATATTATATAGTTTTCAAAAATGATTTTAA
1 AACTATATATTATA-A-TTTTCAAAAATG-TTTTAA
* *
88090 AAATAT-TA-TATAAGTTTTCAAAAATTTTTTTAA
1 AACTATATATTATAA-TTTTCAAAAA-TGTTTTAA
* *
88123 AAC--TATATTATATTTTTCTAAAATGCTTTTTAA
1 AACTATATATTATAATTTTCAAAAATG--TTTTAA
*
88156 AAC----TA-TAT-ATTTTC-AAAATGATTTCAA
1 AACTATATATTATAATTTTCAAAAATG-TTTTAA
88183 AACTATATATTATAATTTTC-AAAATGTTTTAA
1 AACTATATATTATAATTTTCAAAAATGTTTTAA
88215 AACCTATATATTATATAAGTTTTCAAAACAT-TTTTAAA
1 AA-CTATATA-T-TATAA-TTTTCAAAA-ATGTTTT-AA
* * *
88253 AACTATATAATATATATTTTCGGAAACCATTTTTTAA
1 AACTATATATTATA-ATTTTC--AAA-AATGTTTTAA
* *
88290 AACTATATATTATATTTTTCAAAAATATTTT
1 AACTATATATTATAATTTTCAAAAATGTTTT
88321 TCAAAAATTA
Statistics
Matches: 221, Mismatches: 17, Indels: 56
0.75 0.06 0.19
Matches are distributed among these distances:
27 8 0.04
28 6 0.03
29 5 0.02
30 3 0.01
31 19 0.09
32 21 0.10
33 59 0.27
34 13 0.06
35 16 0.07
36 23 0.10
37 38 0.17
38 10 0.05
ACGTcount: A:0.43, C:0.08, G:0.04, T:0.46
Consensus pattern (33 bp):
AACTATATATTATAATTTTCAAAAATGTTTTAA
Found at i:88259 original size:37 final size:36
Alignment explanation
Indices: 88181--88332 Score: 147
Period size: 37 Copynumber: 4.2 Consensus size: 36
88171 AAATGATTTC
88181 AAAACTATATA-T-TATAATTTTC-AAA-ATGTTTTA
1 AAAACTATATATTATATAATTTTCAAAACAT-TTTTA
*
88214 AAACCTATATATTATATAAGTTTTCAAAACATTTTTA
1 AAAACTATATATTATATAA-TTTTCAAAACATTTTTA
* * *
88251 AAAACTATATAATATAT-ATTTTCGGAAACCATTTTTT
1 AAAACTATATATTATATAATTTTC--AAAACATTTTTA
*
88288 AAAACTATATATTATAT--TTTTCAAAAATATTTTTCA
1 AAAACTATATATTATATAATTTTC-AAAACATTTTT-A
*
88324 AAAATTATA
1 AAAACTATA
88333 CTATATTATT
Statistics
Matches: 100, Mismatches: 11, Indels: 13
0.81 0.09 0.10
Matches are distributed among these distances:
33 10 0.10
34 1 0.01
35 19 0.19
36 19 0.19
37 49 0.49
38 2 0.02
ACGTcount: A:0.45, C:0.09, G:0.03, T:0.44
Consensus pattern (36 bp):
AAAACTATATATTATATAATTTTCAAAACATTTTTA
Found at i:88319 original size:13 final size:13
Alignment explanation
Indices: 88301--88328 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
88291 ACTATATATT
88301 ATATTTTTCAAAA
1 ATATTTTTCAAAA
88314 ATATTTTTCAAAA
1 ATATTTTTCAAAA
88327 AT
1 AT
88329 TATACTATAT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.46, C:0.07, G:0.00, T:0.46
Consensus pattern (13 bp):
ATATTTTTCAAAA
Found at i:89545 original size:41 final size:41
Alignment explanation
Indices: 89500--89606 Score: 124
Period size: 41 Copynumber: 2.6 Consensus size: 41
89490 AGGCTATAAG
* * *
89500 TAAGTATTTTGAGCATGATGTTAAGACCTTCAAACCATCAA
1 TAAGTCTTTCGAGCATGATGTTAAGACATTCAAACCATCAA
* * * * * *
89541 TAAGTCTATCGAACATGATGTTAAGACATTCGAGCCATTAT
1 TAAGTCTTTCGAGCATGATGTTAAGACATTCAAACCATCAA
*
89582 TAAGTCTTTCAAGCATGATGTTAAG
1 TAAGTCTTTCGAGCATGATGTTAAG
89607 TCGTTCGGGC
Statistics
Matches: 54, Mismatches: 12, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
41 54 1.00
ACGTcount: A:0.35, C:0.16, G:0.17, T:0.33
Consensus pattern (41 bp):
TAAGTCTTTCGAGCATGATGTTAAGACATTCAAACCATCAA
Found at i:98610 original size:25 final size:26
Alignment explanation
Indices: 98563--98612 Score: 68
Period size: 25 Copynumber: 2.0 Consensus size: 26
98553 ATAACCTATA
*
98563 AAATTAATTTATTTTTATAATTTTTG
1 AAATTAATTTATTATTATAATTTTTG
98589 AAATT-ATTTATGTATTAT-ATTTTT
1 AAATTAATTTAT-TATTATAATTTTT
98613 ATTGTATTGA
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
25 12 0.55
26 10 0.45
ACGTcount: A:0.34, C:0.00, G:0.04, T:0.62
Consensus pattern (26 bp):
AAATTAATTTATTATTATAATTTTTG
Done.