genome.fa.s3311.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003311.1 Hibiscus syriacus cultivar Beakdansim tig00006968_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  100982

Tables:   1   

This is table  1  of  1  ( 76 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
710--736	2	13.5	2	100	0	54	48	0	0	51	1.00
3918--3951	16	2.1	16	100	0	68	41	11	0	47	1.40
6558--6613	29	2.0	29	85	3	78	33	7	14	44	1.72
12173--12197	12	2.1	12	100	0	50	44	0	16	40	1.47
13739--13787	20	2.5	19	86	3	62	38	16	6	38	1.73
14778--15087	39	7.8	40	73	15	243	43	11	8	36	1.71
14838--15074	127	1.9	126	85	2	332	44	11	7	36	1.70
15132--15159	14	2.0	14	100	0	56	14	14	0	71	1.15
15036--15252	110	2.0	111	82	4	269	37	11	7	42	1.71
15290--15647	116	3.1	115	79	7	296	44	11	8	36	1.70
15349--15637	58	5.0	57	80	8	239	44	10	7	37	1.68
15801--15914	45	2.5	45	75	8	124	38	14	12	35	1.83
16861--16887	13	2.1	13	100	0	54	55	7	14	22	1.64
22624--22697	20	3.5	22	76	10	73	40	0	1	58	1.07
22654--22726	37	2.1	33	87	10	101	43	0	0	56	0.99
22678--22712	14	2.5	14	85	0	52	48	0	0	51	1.00
22635--22719	20	4.4	20	69	27	67	43	0	0	56	0.99
22802--22844	16	2.5	17	82	17	54	55	2	2	39	1.25
22811--22864	23	2.4	23	81	3	65	55	1	1	40	1.21
24692--24730	2	19.5	2	94	0	69	51	0	0	48	1.00
26235--26265	2	15.5	2	100	0	62	51	0	0	48	1.00
27575--27613	14	2.8	14	85	11	53	58	7	17	15	1.59
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29644--29691	14	3.4	14	81	18	55	77	0	2	20	0.88
29646--29691	18	2.6	17	83	10	56	76	0	2	21	0.90
30135--30170	17	2.3	15	90	9	54	36	2	0	61	1.11
30393--30425	15	2.3	15	89	5	50	57	0	0	42	0.98
30482--30525	19	2.2	19	84	12	52	65	0	4	29	1.12
31834--31903	25	2.8	25	79	12	81	55	0	0	44	0.99
34564--34842	59	4.7	59	81	3	312	40	16	14	28	1.88
39647--39687	20	2.0	20	86	9	57	39	9	7	43	1.65
39906--39941	15	2.4	15	95	0	63	33	33	19	13	1.91
40547--40587	22	1.9	21	90	5	64	24	34	26	14	1.94
45287--45327	20	2.0	20	86	9	57	39	9	7	43	1.65
45545--45578	15	2.3	15	89	0	50	35	29	14	20	1.93
46184--46224	22	1.9	21	90	5	64	26	34	26	12	1.92
53892--53934	21	2.0	22	86	9	61	53	0	2	44	1.13
53904--54034	64	2.0	64	91	2	210	55	0	0	43	1.05
53967--54053	28	3.2	26	70	20	77	55	2	0	42	1.12
53925--54009	40	2.2	37	85	12	109	55	1	0	43	1.07
53904--54053	64	2.5	61	87	8	200	55	1	0	43	1.08
54859--54906	23	2.1	23	88	0	69	35	12	18	33	1.89
55377--55449	23	3.2	23	80	0	83	36	19	8	35	1.81
55866--55935	23	3.2	21	82	13	63	40	18	5	35	1.75
55878--55935	23	2.5	23	91	0	89	37	18	5	37	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56349--56421	23	3.2	23	92	0	119	38	21	5	34	1.77
54980--56764	489	3.7	489	95	1	3155	40	10	7	41	1.68
56768--56859	25	3.8	25	72	8	100	38	10	9	41	1.73
59269--61851	183	14.1	183	95	0	4594	33	16	15	35	1.90
63060--63128	3	23.0	3	87	0	102	27	33	2	36	1.72
64946--65000	21	2.6	21	100	0	110	27	16	16	40	1.89
64638--65807	200	5.8	196	84	9	1337	30	17	15	36	1.91
64746--65200	221	2.1	221	98	0	883	30	18	15	35	1.92
64619--65821	400	3.0	400	92	3	1899	30	18	15	35	1.91
64967--65822	200	4.3	200	95	0	1525	30	18	15	35	1.92
65923--65983	19	3.3	18	88	2	59	52	11	1	34	1.47
65935--65983	19	2.6	19	96	0	89	55	10	2	32	1.45
67863--67927	21	3.1	21	93	0	103	16	30	10	41	1.83
70121--70594	182	2.6	182	89	0	698	26	16	13	42	1.86
82168--82220	27	2.0	27	88	0	79	3	37	3	54	1.36
82179--82235	27	2.1	27	83	0	69	3	35	5	56	1.39
85884--85923	18	2.2	18	95	0	71	30	2	5	62	1.29
86932--87003	23	3.2	23	88	4	110	33	5	22	38	1.77
87420--87492	23	3.2	23	92	0	110	34	4	23	38	1.74
86509--89354	489	5.8	489	96	0	4992	40	7	10	40	1.68
87909--87981	23	3.2	23	92	0	119	34	5	21	38	1.77
88397--88469	23	3.2	23	81	11	87	36	5	17	39	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
88885--88957	23	3.2	23	94	0	119	34	4	21	39	1.73
89719--89755	4	8.8	4	91	5	56	72	2	2	21	1.09
90652--91104	182	2.5	182	91	0	699	28	15	12	43	1.83
92500--92582	32	2.6	31	88	1	121	25	9	21	43	1.83
97884--97908	11	2.3	11	100	0	50	32	8	24	36	1.84
98062--98534	181	2.6	182	88	1	680	43	12	15	27	1.84
98466--98506	20	2.2	19	83	12	50	51	14	17	17	1.77
100677--100728	21	2.6	20	91	8	88	44	9	30	15	1.78
100678--100740	19	3.2	19	90	4	90	41	11	30	17	1.84
100772--100834	33	2.0	30	84	9	81	28	0	49	22	1.50

Tables:   1

The End!