genome.fa.s3312.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003312.1 Hibiscus syriacus cultivar Beakdansim tig00006971_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  51987

Tables:   1   

This is table  1  of  1  ( 56 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1415--1538	42	3.0	42	87	5	166	26	36	12	25	1.91
1425--1538	39	2.8	41	88	4	160	27	36	11	24	1.90
1631--1724	21	4.5	21	86	5	127	22	9	34	34	1.87
1645--1732	42	2.1	42	93	0	149	21	9	34	35	1.85
1666--1773	21	4.8	21	77	16	110	22	10	32	35	1.87
1706--1760	28	2.0	28	92	0	92	21	7	34	36	1.81
2122--2173	21	2.5	21	80	0	59	21	34	11	32	1.89
3596--3624	13	2.2	13	100	0	58	51	6	6	34	1.55
5756--5836	23	3.7	23	80	8	105	23	23	25	27	2.00
5735--5855	43	2.8	42	77	11	129	22	21	28	28	1.99
5761--5855	21	4.4	21	79	9	95	24	21	26	28	1.99
6476--6534	28	2.1	27	87	3	82	37	15	10	37	1.81
7699--7773	30	2.4	30	84	15	98	36	6	14	42	1.72
7708--7767	30	2.0	30	93	6	104	35	6	15	43	1.72
7945--8018	20	3.7	20	83	3	94	20	28	22	28	1.99
7963--8027	21	3.1	21	80	8	80	20	27	27	24	1.99
7945--8027	41	2.0	41	88	4	123	20	27	25	26	1.99
10347--10409	24	2.5	25	92	5	101	19	11	1	68	1.28
24600--24687	45	2.0	45	93	0	149	27	19	26	27	1.99
28482--28527	3	15.3	3	100	0	92	0	34	0	65	0.93
28770--28823	24	2.2	24	86	0	72	42	14	16	25	1.87
29779--29868	41	2.2	40	84	5	117	50	18	12	18	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29807--29867	20	3.0	20	80	4	86	49	18	13	19	1.79
29800--29858	21	2.9	21	82	2	75	54	18	10	16	1.70
29853--29978	20	6.2	20	69	1	90	38	11	22	27	1.89
29854--29956	40	2.6	40	82	0	116	37	10	23	28	1.88
29928--29978	22	2.5	20	80	6	57	39	11	23	25	1.89
29962--30021	20	3.0	20	73	7	59	28	20	18	33	1.96
30527--30564	17	2.2	17	86	9	51	44	7	2	44	1.47
30679--30718	21	1.9	21	89	0	62	37	2	10	50	1.50
36011--36168	79	2.0	79	92	2	264	34	13	8	43	1.75
40478--40595	20	5.8	20	72	14	80	37	22	19	21	1.95
40541--40816	20	13.6	20	74	8	200	37	23	18	20	1.94
40541--40816	81	3.4	81	80	7	292	37	23	18	20	1.94
40606--40813	41	5.1	41	88	1	303	37	23	18	20	1.95
41673--41726	24	2.2	24	93	0	90	20	18	20	40	1.91
44157--44245	20	4.4	20	85	2	126	34	23	22	19	1.96
44217--44312	33	2.8	33	88	3	129	42	19	23	13	1.87
44491--44527	14	2.6	14	86	0	56	48	21	0	29	1.50
46455--46541	20	4.3	20	94	2	140	39	21	18	20	1.93
46576--46619	19	2.3	19	92	0	70	11	15	29	43	1.82
46585--46670	19	4.8	19	79	13	101	6	16	27	48	1.71
46610--46636	14	1.9	14	100	0	54	7	14	29	48	1.71
46591--46654	33	1.9	33	96	0	119	6	14	29	50	1.67
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46758--47137	94	4.1	94	93	2	622	46	18	12	21	1.82
48832--48887	20	2.8	20	77	20	71	41	19	23	16	1.90
48872--48927	14	3.6	14	74	21	58	44	23	23	8	1.81
48872--48946	33	2.3	33	95	0	132	45	22	21	10	1.82
48823--48968	19	8.1	19	70	19	98	45	19	21	13	1.84
48988--49065	21	3.8	20	80	9	79	11	17	17	52	1.74
49016--49062	19	2.4	19	85	3	58	14	14	23	46	1.82
49396--49448	22	2.4	22	75	6	54	24	13	41	20	1.88
49601--49882	20	13.9	19	73	14	174	18	16	25	38	1.92
49600--49793	40	4.8	41	88	1	293	18	17	25	39	1.92
49703--49933	102	2.3	99	93	3	392	19	16	27	37	1.92
49982--50036	20	2.7	19	72	10	56	16	18	30	34	1.93

Tables:   1

The End!