genome.fa.s3313.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003313.1 Hibiscus syriacus cultivar Beakdansim tig00006975_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  86139

Tables:   1   

This is table  1  of  1  ( 45 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
959--997	3	13.0	3	94	0	69	33	2	0	64	1.08
3464--3655	85	2.3	85	82	5	219	29	20	20	29	1.97
3675--3716	2	21.5	2	95	4	77	47	0	0	52	1.00
9324--9363	3	13.0	3	94	5	71	32	0	0	67	0.91
10507--10545	10	3.9	10	93	0	60	69	0	5	25	1.09
11904--12070	34	4.9	35	71	17	95	44	6	2	45	1.45
11992--12084	38	2.5	36	86	10	118	41	6	6	45	1.55
12111--12311	37	5.4	36	80	13	205	43	6	4	45	1.51
12111--12314	75	2.7	71	81	9	219	43	6	4	45	1.50
12752--14718	165	11.9	164	80	5	1604	25	19	23	30	1.98
12791--14694	85	22.9	85	77	6	1582	25	19	23	30	1.98
12752--14664	250	7.7	249	84	4	2223	25	19	23	30	1.98
12794--14745	84	23.5	84	77	6	1597	25	19	23	30	1.98
15852--16075	95	2.5	85	76	16	222	32	18	18	29	1.95
15910--16091	95	1.9	95	90	2	294	29	17	19	33	1.95
19406--19432	12	2.2	12	100	0	54	70	0	0	29	0.88
19626--19659	16	2.2	16	89	5	52	76	5	17	0	0.98
20710--20773	33	1.9	33	90	0	101	17	26	32	23	1.96
21005--21154	34	4.4	35	72	18	118	44	4	3	48	1.38
24951--25006	26	2.3	25	81	9	62	58	12	5	23	1.54
26227--26277	21	2.4	21	71	12	50	45	0	0	54	0.99
28734--28782	21	2.3	21	82	0	62	36	10	4	48	1.56
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36404--36438	18	1.9	18	100	0	70	45	14	0	40	1.45
36577--36668	38	2.4	39	85	5	132	33	15	4	46	1.65
41633--41673	12	3.3	12	89	3	55	41	2	2	53	1.27
41638--41674	13	2.9	13	92	4	58	37	2	5	54	1.38
52361--52471	25	4.4	25	97	0	204	24	24	20	30	1.99
54889--54932	13	3.4	13	90	0	70	15	45	18	20	1.85
54919--54962	15	2.9	15	96	3	79	13	36	27	22	1.92
54922--54971	23	2.1	24	92	7	84	12	36	28	24	1.91
54919--54981	8	7.5	8	87	10	83	14	34	26	23	1.93
56269--56303	18	1.9	18	88	0	52	54	0	17	28	1.43
57412--57526	24	4.8	24	88	5	153	22	19	18	40	1.92
59604--59648	13	3.5	13	100	0	90	15	46	17	20	1.84
59626--59680	18	2.9	18	83	8	65	16	45	20	18	1.86
59613--59674	31	2.0	31	90	0	97	16	46	19	17	1.84
59598--59674	13	5.5	13	78	14	73	15	44	19	20	1.87
59598--59674	31	2.8	26	73	17	73	15	44	19	20	1.87
59664--59696	15	2.2	15	100	0	66	12	36	27	24	1.91
59661--59705	8	5.5	8	89	10	65	13	35	28	22	1.92
60999--61036	18	2.1	18	90	0	58	52	0	18	28	1.45
62144--62261	24	5.0	24	85	6	150	23	17	18	39	1.92
64584--64617	18	1.9	17	88	5	50	11	17	20	50	1.77
64940--64964	2	12.5	2	100	0	50	48	0	0	52	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
68685--68746	2	31.0	2	100	0	124	50	0	0	50	1.00

Tables:   1

The End!