Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003317.1 Hibiscus syriacus cultivar Beakdansim tig00006988_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  74691

Tables:   1   

This is table  1  of  1  ( 23 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
598--651
28
1.9
28
92
0
90
31
3
24
40
1.72
3145--3203
29
2.0
29
83
6
75
57
10
15
16
1.64
4102--4141
20
1.9
20
85
10
53
45
20
27
7
1.78
5038--5091
24
2.3
23
90
6
83
14
31
3
50
1.61
24909--24998
44
2.0
44
83
8
112
32
22
14
31
1.94
25072--25251
80
2.3
79
86
0
234
36
17
18
27
1.93
24981--25442
198
2.3
197
88
2
658
35
16
20
27
1.94
25266--25483
79
2.7
79
85
0
292
36
16
19
27
1.93
25151--25369
118
1.8
119
86
2
316
36
15
21
26
1.93
25616--25876
116
2.2
116
79
7
264
36
15
20
27
1.93
28193--28273
34
2.4
34
95
0
144
40
0
19
39
1.52
48636--48792
78
2.0
78
93
0
269
26
22
17
33
1.96
50073--50115
22
1.9
23
86
13
63
46
16
6
30
1.73
51601--51646
22
2.1
22
92
8
76
34
19
4
41
1.71
52760--52840
29
2.8
29
74
7
74
33
18
7
40
1.78
58155--58207
23
2.3
23
93
0
88
32
0
33
33
1.58
59714--59838
44
2.8
44
81
6
164
28
20
25
25
1.99
59814--59972
83
1.9
83
88
0
237
25
20
18
34
1.96
59903--60229
115
2.8
115
80
2
372
26
23
15
34
1.94
63694--63748
24
2.3
24
96
3
103
50
0
10
38
1.37
65712--65752
17
2.3
18
83
12
57
39
0
7
53
1.29
65712--65758
17
2.5
19
76
16
53
38
0
6
55
1.26
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
72999--73029
15
2.1
15
93
0
53
54
0
0
45
0.99

Tables:   1

The End!