genome.fa.s3318.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003318.1 Hibiscus syriacus cultivar Beakdansim tig00006989_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  62314

Tables:   1   

This is table  1  of  1  ( 44 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1083--1120	20	1.9	20	84	10	51	28	5	15	50	1.66
1448--1511	29	2.2	28	86	5	83	48	4	7	39	1.53
5025--5566	12	44.2	12	62	17	96	40	17	17	24	1.90
5016--5110	36	2.6	36	81	3	109	44	11	16	27	1.83
5125--5219	28	3.5	27	79	9	88	44	15	15	24	1.86
5121--5622	24	20.2	24	76	8	233	40	17	18	23	1.90
5374--5454	28	2.9	28	79	0	90	40	18	17	23	1.91
9611--9670	27	2.1	29	90	9	97	56	3	1	38	1.26
10641--10708	11	6.2	11	76	17	70	45	7	2	44	1.46
10677--10702	13	2.0	13	100	0	52	46	7	0	46	1.31
11302--11417	21	5.6	21	69	10	60	32	27	18	21	1.96
11405--11517	20	5.7	20	86	5	72	35	27	19	17	1.94
11405--11517	40	2.8	39	84	4	136	35	27	19	17	1.94
11895--11962	33	2.1	33	94	0	118	10	23	17	48	1.78
12044--12152	21	5.7	20	73	17	88	46	18	21	13	1.83
12119--12162	19	2.4	19	88	3	63	45	27	18	9	1.79
12158--12285	19	7.1	19	70	19	78	11	25	17	45	1.82
12180--12236	14	3.7	14	72	20	51	10	24	21	43	1.83
12163--12285	33	3.5	33	85	10	156	11	24	17	46	1.81
12221--12285	21	3.1	21	82	4	96	10	26	15	47	1.78
13959--14734	92	8.4	93	97	1	1483	22	13	18	45	1.84
14867--14925	14	3.9	14	76	20	64	47	28	16	6	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14848--14941	33	2.8	33	93	0	161	47	27	17	7	1.74
14832--14941	19	6.3	19	73	20	96	46	28	16	9	1.77
14937--15077	19	7.6	19	79	10	139	9	19	24	46	1.80
14937--15077	58	2.5	55	83	10	164	9	19	24	46	1.80
14937--15061	39	3.4	39	81	8	129	8	20	24	47	1.78
14973--15077	39	2.7	39	83	4	124	9	18	25	46	1.79
16991--17029	14	2.7	14	92	4	60	35	0	23	41	1.55
17116--17203	19	4.8	19	82	14	123	47	15	22	13	1.81
17116--17222	53	2.0	53	98	1	207	45	16	24	13	1.83
17212--17398	19	10.7	19	76	18	185	14	21	18	45	1.85
17218--17398	52	3.5	52	92	3	303	13	21	18	46	1.83
17236--17431	85	2.3	82	83	11	236	13	21	19	45	1.84
17236--17412	33	5.2	32	76	15	146	12	22	18	46	1.83
20621--20829	20	10.4	20	83	5	208	20	17	25	36	1.94
22280--22434	75	2.1	75	93	0	265	41	12	24	21	1.87
23165--23366	84	2.4	85	85	5	266	30	11	15	42	1.82
35034--35934	464	1.9	458	82	8	1124	30	14	17	36	1.91
42368--42422	22	2.5	23	82	8	62	60	1	3	34	1.25
42371--42422	21	2.5	21	81	9	61	59	1	3	34	1.27
51814--51895	38	2.2	37	80	6	94	58	1	3	36	1.24
57534--57576	18	2.3	19	84	4	52	44	2	9	44	1.49
57443--57645	91	2.3	86	90	4	307	40	2	10	46	1.51

Tables:   1

The End!