genome.fa.s3319.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003319.1 Hibiscus syriacus cultivar Beakdansim tig00006991_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  191021

Tables:   1   

This is table  1  of  1  ( 74 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3552--3583	15	2.1	16	94	5	57	12	25	25	37	1.91
4440--4475	15	2.3	16	95	4	65	13	25	25	36	1.93
3485--5269	890	2.0	888	96	0	3331	26	23	15	34	1.94
18790--18869	23	3.7	22	83	6	92	23	28	22	25	1.99
20945--20969	13	1.9	13	100	0	50	40	0	16	44	1.47
23246--23286	12	3.4	12	93	0	64	19	48	4	26	1.69
26388--26437	24	2.2	23	85	7	66	54	0	6	40	1.25
26432--26531	24	3.8	26	80	15	91	59	0	3	38	1.13
26394--26639	30	8.3	30	75	15	156	54	0	6	38	1.31
26389--26560	85	2.0	85	85	2	229	54	0	5	39	1.24
26432--26609	55	3.2	56	74	16	154	56	0	6	37	1.29
27941--28039	10	10.3	9	77	12	81	16	27	27	29	1.97
27942--28039	19	5.1	19	78	14	78	15	27	27	29	1.96
27940--28039	29	3.4	30	83	9	118	17	27	27	29	1.97
35205--35309	10	10.8	9	74	15	84	18	25	25	30	1.98
35205--35283	20	3.9	21	90	5	119	18	26	22	31	1.97
35246--35313	19	3.5	20	86	9	81	16	26	29	27	1.97
35312--35369	5	10.8	5	75	14	53	20	51	20	6	1.70
35312--35376	22	3.0	22	97	0	121	20	49	21	9	1.76
37372--37449	26	3.0	26	68	17	63	44	2	1	51	1.23
38892--38921	15	1.9	16	93	6	53	40	10	3	46	1.54
40789--40834	23	2.0	23	91	0	74	10	26	28	34	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42976--43079	27	3.9	27	72	13	72	44	4	0	50	1.23
42995--43093	51	2.0	48	81	15	112	40	3	0	56	1.15
43021--43059	14	3.1	14	75	24	50	41	0	0	58	0.98
43247--43313	31	2.2	31	89	7	102	49	10	8	31	1.68
58675--58833	86	1.9	81	85	3	194	28	20	18	32	1.96
61935--61965	7	4.4	7	91	0	53	58	0	0	41	0.98
65082--65114	16	2.1	16	94	0	57	21	6	27	45	1.75
65302--65326	13	1.9	13	100	0	50	36	8	16	40	1.77
65628--65667	21	1.9	21	85	10	55	65	10	17	7	1.46
73845--73884	20	2.0	20	95	0	71	40	7	15	37	1.75
76577--76666	43	2.1	43	97	0	171	25	21	10	43	1.83
88465--88503	12	3.3	12	92	3	62	25	0	0	74	0.82
88480--88514	16	2.1	17	94	5	63	28	0	0	71	0.86
90836--90890	16	3.5	15	82	9	65	23	1	0	74	0.91
90846--90890	13	3.5	13	87	6	74	24	0	0	75	0.80
92481--92518	14	2.7	14	87	0	58	28	13	0	57	1.36
95714--95767	27	2.0	27	96	3	101	70	11	14	3	1.29
95751--95828	1	78.0	1	74	0	57	85	1	12	0	0.65
95747--95828	9	9.2	9	80	11	89	85	1	13	0	0.66
95725--95828	43	2.4	41	79	17	106	81	3	13	0	0.87
98024--98249	114	2.0	114	98	0	434	34	15	19	30	1.93
100311--100422	54	2.1	54	91	0	179	37	17	24	20	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
100776--100830	22	2.5	22	87	0	83	34	14	14	36	1.87
101267--101674	113	3.7	112	91	4	600	36	16	19	27	1.93
102111--102158	6	8.0	6	79	9	53	25	0	0	75	0.81
102113--102158	12	3.8	12	88	8	67	26	0	0	73	0.83
102111--102158	18	2.7	17	83	6	60	25	0	0	75	0.81
102176--102224	17	2.9	17	84	3	55	34	38	10	16	1.82
118787--118842	10	5.6	10	78	18	55	78	0	8	12	0.96
118786--118841	9	5.9	9	82	17	53	76	0	10	12	1.01
118851--118891	18	2.2	19	83	12	50	70	0	19	9	1.14
120143--120664	51	9.9	51	84	8	584	28	15	26	29	1.96
130353--130477	31	4.0	31	80	9	146	29	19	20	31	1.97
130885--130918	17	1.9	18	88	5	52	23	5	17	52	1.66
136634--136667	17	2.0	17	88	0	50	52	32	0	14	1.42
137924--137960	15	2.5	15	100	0	74	21	0	54	24	1.45
138656--138695	21	1.9	21	89	0	62	10	25	40	25	1.86
138678--138738	20	2.9	21	87	7	79	18	26	34	21	1.96
142545--142584	21	1.9	21	85	10	55	35	10	2	52	1.48
155542--155579	20	1.9	20	88	0	58	10	13	7	68	1.39
164424--164588	83	2.0	83	97	0	312	36	15	18	29	1.91
164867--164926	20	2.8	21	80	7	68	26	30	26	16	1.97
166906--166939	17	2.0	17	88	0	50	14	2	29	52	1.56
186534--186601	27	2.5	27	97	0	127	5	20	29	44	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
188333--188442	3	36.7	3	82	10	82	0	20	35	42	1.59
188323--188370	21	2.3	21	92	0	78	0	20	41	37	1.53
188331--188487	21	7.8	20	78	9	124	0	17	35	46	1.53
188331--188487	42	3.7	43	79	11	162	0	17	35	46	1.53
188384--188484	15	6.7	15	78	11	91	0	16	33	49	1.46
188441--188472	3	10.7	3	93	0	55	0	3	34	62	1.11
188331--188487	12	13.6	12	78	7	137	0	17	35	46	1.53
188366--188487	6	20.8	6	80	8	90	0	17	33	48	1.53

Tables:   1

The End!