Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000332.1 Hibiscus syriacus cultivar Beakdansim tig00000616_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  47000

Tables:   1   

This is table  1  of  1  ( 34 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1--220
4
56.2
4
90
6
353
49
25
0
24
1.54
1114--1255
64
2.2
64
81
5
162
25
22
16
35
1.95
5656--5680
3
8.3
3
100
0
50
0
68
32
0
0.90
8403--8533
39
3.4
39
82
2
165
24
29
27
19
1.98
18162--18189
6
4.7
6
100
0
56
0
17
17
64
1.30
18474--18509
2
18.0
2
100
0
72
50
0
0
50
1.00
18509--18536
2
14.0
2
100
0
56
50
0
50
0
1.00
19936--19974
16
2.3
17
82
13
53
56
7
5
30
1.49
20391--20434
22
2.0
22
81
0
52
52
15
4
27
1.63
22504--22565
3
20.7
3
74
12
56
62
3
3
30
1.26
22504--22567
24
2.7
23
83
11
76
64
3
3
29
1.24
22718--22961
40
5.7
42
68
12
104
24
18
31
26
1.97
22800--23051
46
5.8
45
72
13
168
24
18
30
26
1.98
22849--23051
43
4.7
43
72
12
157
22
18
31
27
1.97
22758--23080
129
2.5
129
93
0
547
24
18
31
26
1.97
22763--23081
40
7.5
41
70
11
200
24
18
31
26
1.98
23108--23204
28
3.4
28
80
15
83
46
12
15
25
1.81
23128--23204
28
2.6
28
82
17
95
46
11
15
25
1.80
23206--23395
66
2.9
64
73
7
159
37
14
18
28
1.91
23593--23645
27
2.0
27
82
10
65
45
16
9
28
1.79
24263--24366
36
3.0
36
83
4
133
36
11
19
32
1.87
24264--24382
36
3.4
36
80
6
120
36
12
20
30
1.90
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
24334--24566
105
2.3
101
85
8
292
37
12
19
30
1.89
30382--30425
22
2.0
22
81
0
52
52
15
4
27
1.63
32484--32548
3
21.7
3
75
12
62
63
3
3
30
1.25
32485--32550
24
2.8
23
82
11
80
63
3
3
30
1.24
36382--36411
15
2.0
15
100
0
60
53
13
20
13
1.72
37110--37167
16
3.7
16
72
21
59
43
6
5
44
1.53
38849--38909
30
2.0
30
87
6
88
60
8
14
16
1.57
38956--39034
30
2.7
29
86
7
106
56
8
18
15
1.64
38977--39064
30
2.9
30
83
3
88
55
10
19
14
1.67
39907--39956
25
2.0
24
88
3
73
26
2
14
58
1.47
43140--43177
13
2.9
13
88
7
51
7
5
7
78
1.07
45427--45476
24
2.1
24
88
7
75
26
2
14
58
1.47

Tables:   1

The End!