Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003321.1 Hibiscus syriacus cultivar Beakdansim tig00006993_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  59889

Tables:   1   

This is table  1  of  1  ( 40 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
13825--13868
18
2.4
18
80
0
52
11
43
0
45
1.40
18025--18062
15
2.7
15
84
8
53
81
2
10
5
0.94
18024--18061
20
1.9
19
89
5
58
81
5
10
2
0.94
24843--24895
21
2.5
21
87
0
79
18
24
20
35
1.95
24885--24937
20
2.7
20
90
0
88
37
20
20
20
1.94
24924--25010
20
4.3
20
92
0
138
29
26
19
24
1.98
25847--25893
24
2.0
24
95
0
85
27
21
17
34
1.95
28312--28394
20
4.2
20
87
6
116
34
24
21
19
1.96
28400--28495
33
2.9
34
88
3
149
13
22
19
43
1.86
28601--28637
14
2.6
14
86
0
56
48
21
0
29
1.50
30081--30120
21
2.0
20
86
13
57
27
15
32
25
1.95
30607--30639
14
2.4
14
100
0
66
48
24
18
9
1.76
30624--30732
20
5.4
20
93
0
164
34
23
20
21
1.96
30775--30933
20
8.6
20
71
18
94
21
18
18
40
1.91
32807--32896
20
4.6
20
85
1
101
46
23
15
14
1.82
33204--33257
22
2.5
22
81
0
63
22
18
37
22
1.95
33424--33554
20
6.6
20
90
3
194
21
20
19
38
1.94
33551--33596
21
2.2
21
92
0
74
39
17
26
17
1.91
35217--35272
20
2.8
20
91
2
96
53
10
16
19
1.71
35962--36005
21
2.1
21
95
0
79
25
29
20
25
1.99
39008--39047
11
3.6
11
82
0
53
75
0
0
25
0.81
39338--39516
84
2.1
84
87
1
259
22
19
26
31
1.98
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
39557--39670
37
3.0
37
79
5
111
42
13
21
23
1.88
39568--39666
37
2.6
38
80
4
119
44
14
21
20
1.86
39557--39947
144
2.8
138
85
7
507
40
13
19
26
1.88
39848--39951
36
2.9
36
95
0
190
43
13
19
24
1.86
42946--42984
16
2.4
17
87
12
55
74
2
12
10
1.17
42934--42982
25
2.0
25
88
8
73
71
4
10
14
1.27
44165--44189
13
1.9
13
100
0
50
48
0
0
52
1.00
43926--44298
186
2.0
180
90
4
586
42
2
9
46
1.50
46392--46475
31
2.7
30
76
8
89
28
33
26
11
1.92
47384--47557
56
3.1
56
88
2
233
45
14
2
37
1.57
47474--47523
16
3.4
16
68
21
54
48
16
0
36
1.46
47384--47568
84
2.2
85
87
2
266
45
15
2
36
1.60
47384--47536
28
5.5
28
92
1
227
47
15
1
35
1.56
47549--47615
29
2.3
29
86
0
98
40
17
4
37
1.70
47592--47641
25
2.0
25
100
0
100
40
12
0
48
1.40
48189--48239
20
2.6
21
84
9
63
27
5
7
58
1.49
56892--56934
20
2.1
21
87
8
63
18
13
0
67
1.23
56891--56940
20
2.5
20
75
15
59
18
18
0
64
1.30

Tables:   1

The End!