Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003322.1 Hibiscus syriacus cultivar Beakdansim tig00006994_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  54880

Tables:   1   

This is table  1  of  1  ( 28 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2337--2370
3
11.7
3
93
6
61
35
0
0
64
0.94
2857--2887
6
5.2
6
100
0
62
48
0
0
51
1.00
4073--4197
60
2.1
60
84
3
162
40
12
2
44
1.56
16617--16721
50
2.1
51
81
1
122
35
8
20
36
1.83
17488--17515
5
5.6
5
100
0
56
0
17
0
82
0.68
18886--18920
18
1.9
18
88
0
52
60
0
14
25
1.35
20219--20444
118
1.9
118
89
3
348
28
12
6
53
1.62
23364--23388
7
3.6
7
100
0
50
56
0
16
28
1.41
25270--25338
31
2.2
31
86
2
93
43
5
15
34
1.71
25278--25338
31
2.0
31
90
0
95
42
4
18
34
1.71
25337--25680
94
3.8
92
83
11
419
38
15
7
38
1.76
25365--25680
175
1.8
173
88
5
485
37
15
7
38
1.76
25459--25626
81
2.1
80
90
1
264
36
17
7
39
1.77
25587--25830
66
3.7
66
76
5
276
39
16
7
36
1.78
25591--25882
134
2.2
137
83
4
378
38
16
8
37
1.78
26718--26809
30
3.1
30
78
12
91
61
5
14
18
1.51
27150--27198
2
24.0
2
82
12
55
51
2
4
42
1.32
27150--27205
14
3.9
15
81
9
73
50
1
5
42
1.35
27607--27645
18
2.2
18
85
0
51
58
5
2
33
1.33
27926--27981
20
2.9
20
92
5
89
21
12
26
39
1.89
31452--31517
23
2.9
23
93
0
105
36
16
21
25
1.94
34523--34555
2
16.5
2
100
0
66
48
0
0
51
1.00
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
35298--35333
18
2.0
18
94
0
63
25
22
30
22
1.99
37251--37301
13
4.0
12
82
10
57
47
0
13
39
1.43
38532--38577
2
23.0
2
95
0
83
47
2
0
50
1.13
38712--38752
2
20.5
2
100
0
82
51
0
0
48
1.00
45128--45153
2
13.0
2
100
0
52
0
50
0
50
1.00
53071--53137
15
4.3
15
74
7
53
41
0
1
56
1.08

Tables:   1

The End!