Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003324.1 Hibiscus syriacus cultivar Beakdansim tig00007002_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  60362

Tables:   1   

This is table  1  of  1  ( 44 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
8215--8239
2
12.5
2
100
0
50
52
0
0
48
1.00
8370--8443
24
3.1
23
78
16
62
28
22
25
22
1.99
8544--8604
30
2.0
30
87
0
86
37
18
4
39
1.72
8544--8592
15
3.3
15
73
0
53
40
18
6
34
1.75
13348--13448
31
3.0
34
82
7
118
39
4
10
44
1.61
13477--13518
22
1.9
22
90
0
66
21
4
2
71
1.16
13475--13512
18
2.2
17
90
4
58
23
2
2
71
1.12
13477--13517
14
2.7
16
81
14
59
21
4
2
70
1.18
14619--14657
18
2.2
18
95
0
69
17
5
0
76
0.96
14693--14749
20
3.0
20
73
16
59
24
5
0
70
1.08
14723--14759
16
2.3
16
90
9
58
27
0
0
72
0.84
15138--15229
5
17.4
5
71
22
55
16
7
1
75
1.09
15133--15229
21
5.3
17
73
21
72
16
7
1
75
1.08
15132--15229
37
2.6
37
93
3
160
16
7
1
75
1.07
15182--15244
27
2.3
27
94
0
108
17
7
0
74
1.05
15155--15244
16
6.7
14
74
25
56
16
10
0
73
1.09
15145--15304
64
2.5
63
82
8
166
17
10
0
71
1.16
15210--15351
64
2.2
64
80
10
150
23
8
0
67
1.22
23409--23451
18
2.4
18
92
0
68
20
6
0
72
1.08
23858--23888
16
1.9
16
100
0
62
19
19
22
38
1.93
23909--23965
26
2.2
26
87
3
89
17
14
0
68
1.21
23947--23980
5
6.8
5
90
9
52
14
0
0
85
0.60
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
25642--25699
24
2.4
23
82
5
71
29
24
24
22
1.99
25800--25862
30
2.1
30
87
0
90
38
17
4
39
1.71
25800--25848
15
3.3
15
73
0
53
40
18
6
34
1.75
35405--35450
21
2.2
21
92
0
74
34
15
8
41
1.78
40418--40471
2
27.0
2
100
0
108
50
0
0
50
1.00
40825--40875
21
2.5
20
81
12
59
31
17
17
33
1.94
45053--45110
19
3.2
19
68
22
52
15
8
17
58
1.61
45310--45343
15
2.5
13
82
17
50
38
5
11
44
1.65
45314--45350
15
2.4
16
95
4
67
43
5
13
37
1.67
45405--45443
15
2.4
16
91
8
62
20
2
23
53
1.57
46300--46510
93
2.2
96
85
5
286
33
16
23
26
1.96
46834--47210
55
6.9
55
91
0
594
28
20
20
30
1.98
53357--53540
94
1.9
95
87
4
273
31
16
22
28
1.96
53592--53657
29
2.3
29
91
0
105
42
1
21
34
1.62
53941--54269
55
6.0
55
90
0
496
28
19
20
31
1.97
53939--54316
166
2.3
166
87
2
539
28
18
20
32
1.96
55496--55545
21
2.4
21
86
6
66
50
4
30
16
1.63
55828--55871
3
14.7
3
85
0
61
38
0
0
61
0.96
55828--55876
18
2.7
18
90
0
80
40
0
0
59
0.98
57422--57457
3
12.0
3
93
0
63
33
2
0
63
1.08
57758--57821
28
2.3
28
81
5
76
59
1
1
37
1.16
58102--58136
12
3.0
12
95
4
63
51
8
0
40
1.33

Tables:   1

The End!