genome.fa.s3325.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003325.1 Hibiscus syriacus cultivar Beakdansim tig00007004_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  88622

Tables:   1   

This is table  1  of  1  ( 63 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7654--7704	21	2.5	20	81	9	59	33	23	15	27	1.95
10583--10625	20	2.2	20	86	0	59	34	16	11	37	1.85
11087--11129	20	2.2	20	100	0	86	41	18	4	34	1.71
19290--19332	20	2.2	20	91	0	68	34	20	11	32	1.89
25038--25114	3	25.3	3	81	7	77	57	0	0	42	0.99
25026--25118	15	6.0	15	74	23	77	55	0	0	44	0.99
25026--25114	18	5.2	18	77	18	77	56	0	0	43	0.99
25294--26033	75	9.8	75	98	1	1394	36	21	19	22	1.95
26710--26765	23	2.5	22	80	5	67	35	12	14	37	1.84
29200--29413	114	1.9	114	89	0	329	30	19	15	34	1.93
31968--32007	2	20.0	2	100	0	80	50	0	0	50	1.00
37822--37847	13	2.0	13	100	0	52	7	61	30	0	1.24
38540--38613	3	25.3	3	76	15	75	59	0	0	40	0.97
41014--41052	20	2.0	20	94	0	69	17	15	23	43	1.87
45272--45775	252	2.0	253	97	0	956	37	13	15	34	1.86
49612--50001	146	2.7	146	88	0	548	32	20	26	21	1.97
52310--52426	47	2.5	47	91	1	182	31	15	22	30	1.95
53175--53217	6	7.2	6	89	10	70	16	16	18	48	1.81
53175--53217	19	2.4	18	92	7	70	16	16	18	48	1.81
55890--56070	96	1.9	96	90	0	290	35	17	25	21	1.95
55977--56243	122	2.2	123	88	3	385	34	14	26	23	1.94
57416--57492	36	2.1	36	82	0	100	41	23	14	20	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
57906--58651	54	13.9	54	87	3	981	33	19	26	21	1.97
58602--59085	55	8.8	55	87	4	631	29	14	26	29	1.95
57907--59256	108	12.5	105	81	7	826	32	17	26	24	1.97
57907--59269	54	25.2	54	83	6	503	32	17	26	24	1.97
59815--60206	146	2.7	146	89	1	581	31	20	27	20	1.97
62553--62597	21	2.1	21	84	8	56	20	28	22	28	1.98
62641--62714	20	3.7	20	81	3	94	28	22	28	20	1.99
62633--62714	41	2.0	41	90	4	130	26	24	28	20	1.99
62749--62791	22	1.9	23	90	4	70	20	20	32	25	1.97
62881--62949	29	2.3	30	82	9	88	46	14	7	31	1.72
62887--62943	30	1.9	30	89	7	89	45	12	8	33	1.72
64216--64276	19	3.2	19	95	2	104	39	11	4	44	1.62
66203--66275	20	3.6	21	79	3	87	30	17	27	24	1.97
66195--66275	41	2.0	41	85	9	112	28	19	27	24	1.99
66421--66483	30	2.1	29	85	11	83	49	12	6	31	1.66
66432--66491	29	2.0	29	90	6	93	43	15	6	35	1.72
72204--72287	32	2.6	32	86	0	114	32	22	13	32	1.92
71641--72386	393	1.9	380	87	4	1082	29	20	15	33	1.94
73858--73901	23	1.9	23	81	9	54	25	4	2	68	1.20
75326--75361	13	2.6	14	86	8	56	47	0	2	50	1.15
75335--75383	21	2.4	19	78	15	53	48	2	8	40	1.44
77152--77190	2	20.5	2	84	10	55	51	0	0	48	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
77137--77190	20	2.8	19	83	10	58	51	0	0	48	1.00
77731--77808	22	3.5	22	70	16	70	37	6	0	56	1.25
77728--77808	23	3.5	24	68	21	75	37	6	0	56	1.24
77732--77797	20	3.0	21	71	16	71	37	7	0	54	1.29
79515--79734	76	2.9	75	84	2	280	35	10	18	35	1.85
79674--80283	183	3.3	184	90	2	888	40	9	16	34	1.80
80067--80885	260	3.1	259	79	5	912	40	9	16	34	1.80
80075--80801	263	2.8	260	81	4	797	40	9	15	33	1.80
81106--81493	75	5.1	76	80	8	355	37	18	7	36	1.80
81113--81493	151	2.5	148	82	7	421	37	17	8	36	1.80
81227--81493	37	7.1	37	65	11	98	35	17	10	36	1.84
81379--81604	124	1.8	121	84	4	310	33	15	12	38	1.85
81500--81694	77	2.5	76	87	4	275	32	14	12	40	1.84
84104--84377	34	8.3	32	72	16	172	44	2	8	44	1.47
84204--84419	34	6.1	34	81	8	227	48	2	7	41	1.46
84106--84337	128	1.8	126	80	9	283	43	2	9	44	1.48
84106--84343	129	1.9	126	80	9	277	43	2	9	44	1.48
84790--84825	18	2.0	18	88	0	54	36	33	11	19	1.87
86637--86698	24	2.5	24	72	15	56	20	4	6	67	1.32

Tables:   1

The End!