genome.fa.s3326.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003326.1 Hibiscus syriacus cultivar Beakdansim tig00007007_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  139053

Tables:   1   

This is table  1  of  1  ( 42 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2488--2522	3	11.7	3	93	0	61	34	2	0	62	1.10
3307--5194	944	2.0	934	91	5	3087	38	13	17	31	1.88
7486--7524	20	2.0	20	100	0	78	48	10	30	10	1.70
9061--9111	22	2.3	22	93	0	84	27	19	37	15	1.92
9128--9171	23	1.9	23	95	0	79	9	25	38	27	1.86
9129--9178	23	2.2	23	88	0	73	12	24	38	26	1.90
9630--9986	171	2.1	173	89	2	551	39	5	18	36	1.74
13138--13178	18	2.3	18	100	0	82	26	34	14	24	1.94
13432--13691	109	2.4	109	92	5	454	27	27	27	17	1.98
20870--20936	26	2.5	28	83	11	86	29	4	8	56	1.50
33672--34468	157	5.0	160	91	1	1252	29	20	15	34	1.94
33672--34468	317	2.5	315	90	2	1256	29	20	15	34	1.94
34544--34595	18	2.9	18	82	0	68	7	40	25	26	1.82
39445--39549	30	3.6	29	80	11	117	43	10	5	40	1.63
43562--43639	23	3.3	23	81	10	95	8	15	19	56	1.65
43562--43688	24	5.4	23	76	6	112	10	14	18	56	1.66
44423--44467	22	2.0	22	95	0	81	44	17	8	28	1.79
55683--55715	16	2.1	16	88	11	50	51	0	0	48	1.00
56289--56322	2	17.0	2	100	0	68	50	0	0	50	1.00
59926--59955	2	15.0	2	100	0	60	50	0	0	50	1.00
60507--60537	16	1.9	16	93	0	53	51	6	0	41	1.27
73865--73898	14	2.6	14	90	9	54	17	5	5	70	1.28
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
74941--74975	14	2.5	14	95	0	61	14	25	17	42	1.86
83027--83082	22	2.4	23	82	5	78	23	25	14	37	1.92
88738--88888	63	2.4	63	84	4	189	29	17	22	29	1.97
94003--94042	21	1.9	21	90	10	64	37	10	0	52	1.35
94495--94526	6	5.3	6	96	0	55	0	43	0	56	0.99
95981--96138	63	2.5	63	85	4	203	29	16	23	30	1.96
96224--96255	16	2.0	16	100	0	64	43	6	6	43	1.54
98161--98322	40	4.1	40	94	3	290	22	17	27	32	1.96
98848--98908	30	2.0	30	93	0	104	24	22	26	26	2.00
107005--107063	20	2.9	20	90	7	84	18	32	27	22	1.97
107578--107640	24	2.6	24	100	0	126	33	0	42	23	1.55
107981--108092	20	5.5	20	81	4	134	20	35	26	16	1.94
107994--108092	42	2.4	40	91	3	153	20	36	28	15	1.92
109173--109199	14	1.9	14	100	0	54	37	22	25	14	1.93
109615--109670	22	2.5	22	100	0	112	17	41	23	17	1.90
115147--115208	23	2.9	21	85	7	81	20	35	25	17	1.95
124081--124161	42	1.9	42	92	0	135	11	23	9	55	1.64
124817--124843	2	13.5	2	100	0	54	51	0	0	48	1.00
132204--132260	28	2.0	28	93	0	96	40	8	21	29	1.83
138409--138452	2	22.0	2	100	0	88	50	0	0	50	1.00

Tables:   1

The End!