Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003327.1 Hibiscus syriacus cultivar Beakdansim tig00007008_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  65364

Tables:   1   

This is table  1  of  1  ( 29 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
534--608
6
12.5
6
88
0
96
8
12
46
33
1.70
539--614
24
3.2
24
96
0
134
10
10
44
34
1.73
534--622
30
3.0
30
88
1
135
12
10
43
33
1.76
557--614
12
4.8
12
82
0
80
10
10
44
34
1.73
724--774
21
2.4
21
100
0
102
33
29
19
17
1.95
5301--5362
31
2.0
31
83
0
79
38
16
11
33
1.84
5731--5772
12
3.6
12
84
9
52
76
2
9
11
1.12
7677--7795
60
2.0
60
83
3
150
36
14
16
32
1.89
19818--20001
92
2.0
92
96
0
341
30
19
19
30
1.96
28068--28189
60
2.1
59
84
1
154
32
14
17
35
1.90
32067--32137
38
1.9
36
91
5
115
47
2
1
47
1.25
33117--33152
2
18.5
2
94
5
65
50
0
0
50
1.00
35274--35435
29
5.5
30
74
8
95
41
6
1
50
1.37
35364--35462
30
3.5
30
74
16
111
42
10
1
46
1.44
35507--35576
29
2.4
29
83
6
81
48
4
7
40
1.50
35527--35584
29
2.0
30
93
3
100
48
1
8
41
1.44
38187--38226
18
2.2
18
86
0
53
35
5
42
17
1.71
39338--39392
28
2.0
28
85
0
74
20
29
20
30
1.97
39355--39403
23
2.1
24
85
11
66
16
28
20
34
1.94
39394--39419
13
2.0
13
100
0
52
7
23
15
53
1.67
40004--40101
30
3.3
30
89
0
142
26
21
18
33
1.96
40280--40369
26
3.3
26
66
19
67
27
4
10
57
1.50
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
40264--40372
55
2.0
55
96
0
200
31
4
10
54
1.54
41851--41915
23
2.8
23
82
13
80
24
27
20
27
1.99
42509--42584
30
2.5
30
86
2
107
26
18
18
36
1.94
53325--53372
22
2.2
22
88
7
71
41
4
0
54
1.20
58129--58193
2
32.5
2
90
0
103
50
4
0
44
1.22
58281--58314
9
3.7
9
88
7
50
73
0
0
26
0.83
58418--58461
3
14.7
3
100
0
88
68
0
0
31
0.90

Tables:   1

The End!