Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01003328.1 Hibiscus syriacus cultivar Beakdansim tig00007009_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 121573
ACGTcount: A:0.33, C:0.16, G:0.18, T:0.33
Found at i:1962 original size:22 final size:21
Alignment explanation
Indices: 1918--1962 Score: 54
Period size: 22 Copynumber: 2.1 Consensus size: 21
1908 AATGAGAAAT
* * *
1918 AATAAAAAATTACAATTACAA
1 AATAAAAAAATACAAATAAAA
1939 AATAAAATAAATACAAATAAAA
1 AATAAAA-AAATACAAATAAAA
1961 AA
1 AA
1963 ATCTATCGAT
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
21 7 0.35
22 13 0.65
ACGTcount: A:0.73, C:0.07, G:0.00, T:0.20
Consensus pattern (21 bp):
AATAAAAAAATACAAATAAAA
Found at i:12078 original size:21 final size:20
Alignment explanation
Indices: 12048--12109 Score: 54
Period size: 20 Copynumber: 3.0 Consensus size: 20
12038 CAGAACCCTA
*
12048 GGGGGTATCGATTCCCCTGT
1 GGGGGGATCGATTCCCCTGT
* **
12068 GGGGGGAATCGGTT-CCCTCAA
1 GGGGGG-ATCGATTCCCCT-GT
12089 GGGGGGATCGATTCCCTCTGT
1 GGGGGGATCGATTCCC-CTGT
12110 ACCACAATGC
Statistics
Matches: 31, Mismatches: 7, Indels: 7
0.69 0.16 0.16
Matches are distributed among these distances:
20 15 0.48
21 14 0.45
22 2 0.06
ACGTcount: A:0.13, C:0.24, G:0.37, T:0.26
Consensus pattern (20 bp):
GGGGGGATCGATTCCCCTGT
Found at i:12092 original size:20 final size:20
Alignment explanation
Indices: 12069--12106 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
12059 TTCCCCTGTG
*
12069 GGGGGAATCGGTTCCCTCAA
1 GGGGGAATCGATTCCCTCAA
*
12089 GGGGGGATCGATTCCCTC
1 GGGGGAATCGATTCCCTC
12107 TGTACCACAA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.16, C:0.26, G:0.37, T:0.21
Consensus pattern (20 bp):
GGGGGAATCGATTCCCTCAA
Found at i:24002 original size:6 final size:6
Alignment explanation
Indices: 23991--24022 Score: 55
Period size: 6 Copynumber: 5.3 Consensus size: 6
23981 AAAAAAATAA
*
23991 ATTAAT ATTAAT ATTAAT ATTAAT ATTTAT AT
1 ATTAAT ATTAAT ATTAAT ATTAAT ATTAAT AT
24023 ATTGATTTTT
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
6 25 1.00
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (6 bp):
ATTAAT
Found at i:30269 original size:21 final size:21
Alignment explanation
Indices: 30243--30287 Score: 63
Period size: 21 Copynumber: 2.1 Consensus size: 21
30233 GATTTCTGGG
* *
30243 CAAGGGGAATCGGTACCCATT
1 CAAGGGGAACCGATACCCATT
*
30264 CAAGGGGAACCGATACCCCTT
1 CAAGGGGAACCGATACCCATT
30285 CAA
1 CAA
30288 ACGAACAAGA
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.31, C:0.29, G:0.24, T:0.16
Consensus pattern (21 bp):
CAAGGGGAACCGATACCCATT
Found at i:31994 original size:22 final size:22
Alignment explanation
Indices: 31921--31986 Score: 123
Period size: 22 Copynumber: 3.0 Consensus size: 22
31911 TATGGACATC
*
31921 ATTCTACGGGCACTACGGTGCA
1 ATTCTACGGGCACTTCGGTGCA
31943 ATTCTACGGGCACTTCGGTGCA
1 ATTCTACGGGCACTTCGGTGCA
31965 ATTCTACGGGCACTTCGGTGCA
1 ATTCTACGGGCACTTCGGTGCA
31987 TTTATACGAG
Statistics
Matches: 43, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
22 43 1.00
ACGTcount: A:0.20, C:0.27, G:0.27, T:0.26
Consensus pattern (22 bp):
ATTCTACGGGCACTTCGGTGCA
Found at i:35096 original size:21 final size:21
Alignment explanation
Indices: 35070--35114 Score: 63
Period size: 21 Copynumber: 2.1 Consensus size: 21
35060 GATTTCTGGG
* *
35070 CAAGGGGAATCGGTACCCATT
1 CAAGGGGAACCGATACCCATT
*
35091 CAAGGGGAACCGATACCCCTT
1 CAAGGGGAACCGATACCCATT
35112 CAA
1 CAA
35115 ACGAACAAGA
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.31, C:0.29, G:0.24, T:0.16
Consensus pattern (21 bp):
CAAGGGGAACCGATACCCATT
Found at i:36829 original size:22 final size:22
Alignment explanation
Indices: 36756--36821 Score: 123
Period size: 22 Copynumber: 3.0 Consensus size: 22
36746 TATGGACATC
*
36756 ATTCTACGGGCACTACGGTGCA
1 ATTCTACGGGCACTTCGGTGCA
36778 ATTCTACGGGCACTTCGGTGCA
1 ATTCTACGGGCACTTCGGTGCA
36800 ATTCTACGGGCACTTCGGTGCA
1 ATTCTACGGGCACTTCGGTGCA
36822 TTTATACGAG
Statistics
Matches: 43, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
22 43 1.00
ACGTcount: A:0.20, C:0.27, G:0.27, T:0.26
Consensus pattern (22 bp):
ATTCTACGGGCACTTCGGTGCA
Found at i:38685 original size:105 final size:105
Alignment explanation
Indices: 38491--38697 Score: 231
Period size: 105 Copynumber: 2.0 Consensus size: 105
38481 GGCCGTCTAT
* * * * * * *
38491 CAATGCACTATAGGTAACAACATTAGGTTCAATGCCTTGTTTTCTCATTGTGTCAACGATATCTT
1 CAATACACTATACGTAACAACATTAGGCTCAATGCCTTGCTTCCTCATTGTGTCAACCATATCAT
** * *
38556 CAGCTTTGGAAACCATTCCCTCCTTGCAATAGGTATCAAC
66 CAGCTTCAGAAACCATACCCTCCTTGCAATACGTATCAAC
* *
38596 CAATACACTATACGTGACAACATTAGGCTCAATTCCTTGCTTCCTCATTGTG-CGAACCATATCA
1 CAATACACTATACGTAACAACATTAGGCTCAATGCCTTGCTTCCTCATTGTGTC-AACCATATC-
* *
38660 AT-AGCTTCAGAAATCC-TACCGTCCTTGCACTACGTATC
64 ATCAGCTTCAGAAA-CCATACCCTCCTTGCAATACGTATC
38698 GATCAATGTA
Statistics
Matches: 84, Mismatches: 15, Indels: 6
0.80 0.14 0.06
Matches are distributed among these distances:
104 1 0.01
105 80 0.95
106 3 0.04
ACGTcount: A:0.28, C:0.27, G:0.14, T:0.31
Consensus pattern (105 bp):
CAATACACTATACGTAACAACATTAGGCTCAATGCCTTGCTTCCTCATTGTGTCAACCATATCAT
CAGCTTCAGAAACCATACCCTCCTTGCAATACGTATCAAC
Found at i:40335 original size:18 final size:19
Alignment explanation
Indices: 40312--40354 Score: 52
Period size: 20 Copynumber: 2.3 Consensus size: 19
40302 CAGTAATCCT
40312 ATTCC-CTGATAATCTTAC
1 ATTCCACTGATAATCTTAC
* *
40330 ATTCCCACTGGTAATCTTCC
1 ATT-CCACTGATAATCTTAC
40350 ATTCC
1 ATTCC
40355 GTGAACCAAA
Statistics
Matches: 21, Mismatches: 2, Indels: 3
0.81 0.08 0.12
Matches are distributed among these distances:
18 3 0.14
19 4 0.19
20 14 0.67
ACGTcount: A:0.23, C:0.33, G:0.07, T:0.37
Consensus pattern (19 bp):
ATTCCACTGATAATCTTAC
Found at i:41371 original size:14 final size:14
Alignment explanation
Indices: 41352--41378 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
41342 ATTTGAATAT
41352 TTTTTGATTAATTA
1 TTTTTGATTAATTA
41366 TTTTTGATTAATT
1 TTTTTGATTAATT
41379 GTTTAAACCT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.26, C:0.00, G:0.07, T:0.67
Consensus pattern (14 bp):
TTTTTGATTAATTA
Found at i:44335 original size:2 final size:2
Alignment explanation
Indices: 44328--44367 Score: 80
Period size: 2 Copynumber: 20.0 Consensus size: 2
44318 TTAGCGACCA
44328 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
44368 TAATGGTCAT
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 38 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:44870 original size:47 final size:47
Alignment explanation
Indices: 44801--44895 Score: 181
Period size: 47 Copynumber: 2.0 Consensus size: 47
44791 AATTATTTTC
*
44801 TTTGAGAAATTTGTAAAGATACATGACATGTGTAATATTTGGAGAAA
1 TTTGAGAAATTTGTAAAGATACAGGACATGTGTAATATTTGGAGAAA
44848 TTTGAGAAATTTGTAAAGATACAGGACATGTGTAATATTTGGAGAAA
1 TTTGAGAAATTTGTAAAGATACAGGACATGTGTAATATTTGGAGAAA
44895 T
1 T
44896 ATGGAGCTGG
Statistics
Matches: 47, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
47 47 1.00
ACGTcount: A:0.40, C:0.04, G:0.22, T:0.34
Consensus pattern (47 bp):
TTTGAGAAATTTGTAAAGATACAGGACATGTGTAATATTTGGAGAAA
Found at i:46780 original size:14 final size:14
Alignment explanation
Indices: 46761--46791 Score: 62
Period size: 14 Copynumber: 2.2 Consensus size: 14
46751 ATTTCTGAAT
46761 GAAGATCTAGATGA
1 GAAGATCTAGATGA
46775 GAAGATCTAGATGA
1 GAAGATCTAGATGA
46789 GAA
1 GAA
46792 CAATGGTACA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 17 1.00
ACGTcount: A:0.45, C:0.06, G:0.29, T:0.19
Consensus pattern (14 bp):
GAAGATCTAGATGA
Found at i:48183 original size:31 final size:31
Alignment explanation
Indices: 48147--48209 Score: 108
Period size: 31 Copynumber: 2.0 Consensus size: 31
48137 CCCAAGAGTT
48147 TGGGAGTTCCTAATGAGAAAGACATATTGAA
1 TGGGAGTTCCTAATGAGAAAGACATATTGAA
* *
48178 TGGGAGTTCCTAGTGAGAAGGACATATTGAA
1 TGGGAGTTCCTAATGAGAAAGACATATTGAA
48209 T
1 T
48210 TCACCGAACT
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.35, C:0.10, G:0.29, T:0.27
Consensus pattern (31 bp):
TGGGAGTTCCTAATGAGAAAGACATATTGAA
Found at i:55043 original size:78 final size:78
Alignment explanation
Indices: 54910--55060 Score: 203
Period size: 78 Copynumber: 1.9 Consensus size: 78
54900 AAGATAATGG
** * *
54910 TATATAAAATGAGTTTTGAGATGATACAACGAATATCATCTACAGCTGTTACCAAGGGAATTAAT
1 TATATAAAATGACCTTTGAGATGATACAACGAATATCATCCACAGCTGTTACCAAGGCAATTAAT
*
54975 GGTAGAGTCATTT
66 AGTAGAGTCATTT
* * * * * *
54988 TATATTAAATGACCTTTGAGATGATACAATGGATCTCATCCATAGCTGTTGCCAAGGCAATTAAT
1 TATATAAAATGACCTTTGAGATGATACAACGAATATCATCCACAGCTGTTACCAAGGCAATTAAT
55053 AGTAGAGT
66 AGTAGAGT
55061 TAGCGGCACA
Statistics
Matches: 62, Mismatches: 11, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
78 62 1.00
ACGTcount: A:0.36, C:0.13, G:0.19, T:0.32
Consensus pattern (78 bp):
TATATAAAATGACCTTTGAGATGATACAACGAATATCATCCACAGCTGTTACCAAGGCAATTAAT
AGTAGAGTCATTT
Found at i:58543 original size:29 final size:29
Alignment explanation
Indices: 58491--58650 Score: 218
Period size: 29 Copynumber: 5.6 Consensus size: 29
58481 CCCCGACCCA
*
58491 GTGACATTAT-GGAAAT-TTTGTGAAAAAG
1 GTGACATTCTGGGAAATATTT-TGAAAAAG
58519 GTGACATTCTGGGAAATATTTTGAAAAAG
1 GTGACATTCTGGGAAATATTTTGAAAAAG
58548 GTGACATTCTGGGAAATATTTTGAAAAAG
1 GTGACATTCTGGGAAATATTTTGAAAAAG
* * * *
58577 TTGACATTTTGAGAATTATTTTGAAAAAG
1 GTGACATTCTGGGAAATATTTTGAAAAAG
* *
58606 GTGACATGCTGGGAATTATTTTGAAAAAG
1 GTGACATTCTGGGAAATATTTTGAAAAAG
*
58635 GTGACATT-TTGGAAAT
1 GTGACATTCTGGGAAAT
58651 TTTCGAATAT
Statistics
Matches: 118, Mismatches: 12, Indels: 4
0.88 0.09 0.03
Matches are distributed among these distances:
28 15 0.13
29 100 0.85
30 3 0.03
ACGTcount: A:0.37, C:0.06, G:0.24, T:0.34
Consensus pattern (29 bp):
GTGACATTCTGGGAAATATTTTGAAAAAG
Found at i:61152 original size:32 final size:31
Alignment explanation
Indices: 61115--61175 Score: 79
Period size: 32 Copynumber: 1.9 Consensus size: 31
61105 TAACCGATGA
* *
61115 TGACGT-GACATTTCCATGTCATTATTTTATGC
1 TGACGTGGA-ATTTACATGTCA-GATTTTATGC
61147 TGACGTGGAATTTACATGTCAGATTTTAT
1 TGACGTGGAATTTACATGTCAGATTTTAT
61176 AATAAAATGT
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
31 7 0.27
32 17 0.65
33 2 0.08
ACGTcount: A:0.25, C:0.15, G:0.18, T:0.43
Consensus pattern (31 bp):
TGACGTGGAATTTACATGTCAGATTTTATGC
Found at i:65675 original size:63 final size:63
Alignment explanation
Indices: 65608--65740 Score: 203
Period size: 63 Copynumber: 2.1 Consensus size: 63
65598 CCTCACCAGT
**
65608 ACCCTCATCAAGATTAGCAACAACTACATTTTCAGCAACCCTCTCAGCAGCACAATCAGCAAC
1 ACCCTCATCAAGACCAGCAACAACTACATTTTCAGCAACCCTCTCAGCAGCACAATCAGCAAC
** * * *
65671 ACCCTCATCAAGACCATTAACAACTACATTTTCAGTAACCCTCTCAGCAGTACAATCAGCAAT
1 ACCCTCATCAAGACCAGCAACAACTACATTTTCAGCAACCCTCTCAGCAGCACAATCAGCAAC
65734 ACCCTCA
1 ACCCTCA
65741 GTAGTATAAT
Statistics
Matches: 63, Mismatches: 7, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
63 63 1.00
ACGTcount: A:0.36, C:0.35, G:0.08, T:0.21
Consensus pattern (63 bp):
ACCCTCATCAAGACCAGCAACAACTACATTTTCAGCAACCCTCTCAGCAGCACAATCAGCAAC
Found at i:67846 original size:45 final size:46
Alignment explanation
Indices: 67740--67857 Score: 134
Period size: 45 Copynumber: 2.5 Consensus size: 46
67730 GCATCGATGC
*
67740 ATGCACATACCATGCATCGATGCACTCAGGGTTTTATGAAAACATCGA
1 ATGCACAT--CATGCATCGATGCACTCAGGCTTTTATGAAAACATCGA
** *
67788 ATGCATTTTATGCATCGATGCACT-ATGGCTTGTT-TG-AAACATCGA
1 ATGCACATCATGCATCGATGCACTCA-GGCTT-TTATGAAAACATCGA
*
67833 ATGCACATCATGCATCGATGAACTC
1 ATGCACATCATGCATCGATGCACTC
67858 TTAATGCACC
Statistics
Matches: 59, Mismatches: 8, Indels: 8
0.79 0.11 0.11
Matches are distributed among these distances:
45 30 0.51
46 21 0.36
47 2 0.03
48 6 0.10
ACGTcount: A:0.31, C:0.22, G:0.19, T:0.29
Consensus pattern (46 bp):
ATGCACATCATGCATCGATGCACTCAGGCTTTTATGAAAACATCGA
Found at i:68101 original size:17 final size:17
Alignment explanation
Indices: 68079--68117 Score: 78
Period size: 17 Copynumber: 2.3 Consensus size: 17
68069 GATCAACAAT
68079 AAGAAACAACAATCAAC
1 AAGAAACAACAATCAAC
68096 AAGAAACAACAATCAAC
1 AAGAAACAACAATCAAC
68113 AAGAA
1 AAGAA
68118 TCAAGAGAGA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 22 1.00
ACGTcount: A:0.67, C:0.21, G:0.08, T:0.05
Consensus pattern (17 bp):
AAGAAACAACAATCAAC
Found at i:70039 original size:24 final size:24
Alignment explanation
Indices: 70007--70065 Score: 91
Period size: 24 Copynumber: 2.5 Consensus size: 24
69997 TTAAAGCTTC
*
70007 TTTTGATAAAGTTAGATCAAAATG
1 TTTTGATAAAGTTAGATCAAAACG
*
70031 TTTTGATAAAGTTGGATCAAAACG
1 TTTTGATAAAGTTAGATCAAAACG
*
70055 TTTTGAAAAAG
1 TTTTGATAAAG
70066 GAGAAAATTC
Statistics
Matches: 32, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
24 32 1.00
ACGTcount: A:0.41, C:0.05, G:0.19, T:0.36
Consensus pattern (24 bp):
TTTTGATAAAGTTAGATCAAAACG
Found at i:73772 original size:23 final size:23
Alignment explanation
Indices: 73719--73805 Score: 115
Period size: 23 Copynumber: 3.9 Consensus size: 23
73709 ATGAATCCCT
* *
73719 TTGAATGTGCATCGAT--ACACC
1 TTGAATGTGCACCGATGCACTCC
* *
73740 ATGAAGGTGCACCGATGCACTCC
1 TTGAATGTGCACCGATGCACTCC
73763 TTGAATGTGCACCGATGCACTCC
1 TTGAATGTGCACCGATGCACTCC
*
73786 TTGAATGTGCATCGATGCAC
1 TTGAATGTGCACCGATGCAC
73806 ACTGCCATGC
Statistics
Matches: 57, Mismatches: 7, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
21 13 0.23
23 44 0.77
ACGTcount: A:0.25, C:0.26, G:0.23, T:0.25
Consensus pattern (23 bp):
TTGAATGTGCACCGATGCACTCC
Found at i:73803 original size:46 final size:46
Alignment explanation
Indices: 73701--73805 Score: 117
Period size: 46 Copynumber: 2.3 Consensus size: 46
73691 ACACTTAACA
* *
73701 GTGCATCGATG-AATCCCTTTGAATGTGCATCGATACACCATGAAG
1 GTGCATCGATGCACTCCCTTTGAATGTGCACCGATACACCATGAAG
* * * *
73746 GTGCACCGATGCACT-CC-TTGAATGTGCACCGATGCACTCCTTGAAT
1 GTGCATCGATGCACTCCCTTTGAATGTGCACCGAT--ACACCATGAAG
73792 GTGCATCGATGCAC
1 GTGCATCGATGCAC
73806 ACTGCCATGC
Statistics
Matches: 50, Mismatches: 7, Indels: 5
0.81 0.11 0.08
Matches are distributed among these distances:
44 15 0.30
45 12 0.24
46 23 0.46
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.26
Consensus pattern (46 bp):
GTGCATCGATGCACTCCCTTTGAATGTGCACCGATACACCATGAAG
Found at i:75422 original size:21 final size:21
Alignment explanation
Indices: 75380--75423 Score: 52
Period size: 21 Copynumber: 2.1 Consensus size: 21
75370 ACTTAGGGAA
* *
75380 CTAGTTCTTCACGGGCTGCTC
1 CTAGCTCTTCACGGGCTCCTC
* *
75401 CTAGCTCTTCTCGTGCTCCTC
1 CTAGCTCTTCACGGGCTCCTC
75422 CT
1 CT
75424 CCGGCACCGG
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.07, C:0.39, G:0.18, T:0.36
Consensus pattern (21 bp):
CTAGCTCTTCACGGGCTCCTC
Found at i:83162 original size:5 final size:5
Alignment explanation
Indices: 83149--83188 Score: 71
Period size: 5 Copynumber: 8.0 Consensus size: 5
83139 TGATATAATC
*
83149 TAGAA TAGAT TAGAT TAGAT TAGAT TAGAT TAGAT TAGAT
1 TAGAT TAGAT TAGAT TAGAT TAGAT TAGAT TAGAT TAGAT
83189 AAATTCTAGT
Statistics
Matches: 34, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
5 34 1.00
ACGTcount: A:0.42, C:0.00, G:0.20, T:0.38
Consensus pattern (5 bp):
TAGAT
Found at i:84615 original size:2 final size:2
Alignment explanation
Indices: 84608--84636 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
84598 TTATAAAATA
84608 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
84637 ATTTTCATTT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:85224 original size:37 final size:37
Alignment explanation
Indices: 85153--85224 Score: 90
Period size: 37 Copynumber: 1.9 Consensus size: 37
85143 TTAGTTTTGA
** * *
85153 TTTAGACATTTATTTTTATAATTCGATTCAATTTTAG
1 TTTAGACATTTAACTTTATAATTAGATACAATTTTAG
* *
85190 TTTAGACATTTAACTTTATAGTTAGATACGATTTT
1 TTTAGACATTTAACTTTATAATTAGATACAATTTT
85225 GATTTTTTTC
Statistics
Matches: 29, Mismatches: 6, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
37 29 1.00
ACGTcount: A:0.31, C:0.08, G:0.10, T:0.51
Consensus pattern (37 bp):
TTTAGACATTTAACTTTATAATTAGATACAATTTTAG
Found at i:88576 original size:32 final size:31
Alignment explanation
Indices: 88535--88594 Score: 77
Period size: 32 Copynumber: 1.9 Consensus size: 31
88525 AAATAATAAT
88535 TTAAATTTATCAATATT-TTACAAAATAATCG
1 TTAAATTTATCAA-ATTGTTACAAAATAATCG
* *
88566 TTAAATTTTATTAAATTGTTATAAAATAA
1 TTAAA-TTTATCAAATTGTTACAAAATAA
88595 ATTTATAATT
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
31 8 0.32
32 17 0.68
ACGTcount: A:0.47, C:0.05, G:0.03, T:0.45
Consensus pattern (31 bp):
TTAAATTTATCAAATTGTTACAAAATAATCG
Found at i:92099 original size:18 final size:18
Alignment explanation
Indices: 92061--92155 Score: 68
Period size: 18 Copynumber: 5.3 Consensus size: 18
92051 AATGCATTAG
* * *
92061 GTAAGATTGAAGATGTGA
1 GTAAGCTTGGAGATTTGA
* *
92079 GTAGGCTTGGTGATTTGA
1 GTAAGCTTGGAGATTTGA
* *
92097 GTAATCTTGGAGATATGA
1 GTAAGCTTGGAGATTTGA
*
92115 GTAATG-TTGGGGATTTGA
1 GTAA-GCTTGGAGATTTGA
* *
92133 GTAAGTTTAGCAG-TTTGA
1 GTAAGCTT-GGAGATTTGA
92151 GTAAG
1 GTAAG
92156 ATTGATGCTC
Statistics
Matches: 60, Mismatches: 14, Indels: 6
0.75 0.17 0.08
Matches are distributed among these distances:
17 1 0.02
18 57 0.95
19 2 0.03
ACGTcount: A:0.28, C:0.03, G:0.34, T:0.35
Consensus pattern (18 bp):
GTAAGCTTGGAGATTTGA
Found at i:97574 original size:21 final size:21
Alignment explanation
Indices: 97548--97592 Score: 63
Period size: 21 Copynumber: 2.1 Consensus size: 21
97538 GATTTCTGGG
* *
97548 CAAGGGGAATCGGTACCCATT
1 CAAGGGGAACCGATACCCATT
*
97569 CAAGGGGAACCGATACCCCTT
1 CAAGGGGAACCGATACCCATT
97590 CAA
1 CAA
97593 ACGACAGAAT
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.31, C:0.29, G:0.24, T:0.16
Consensus pattern (21 bp):
CAAGGGGAACCGATACCCATT
Found at i:98464 original size:32 final size:32
Alignment explanation
Indices: 98423--98518 Score: 117
Period size: 32 Copynumber: 3.0 Consensus size: 32
98413 GAGTCGAGGG
98423 TTTACCTATGTTCTACGGAACATATGGACAGT
1 TTTACCTATGTTCTACGGAACATATGGACAGT
* *
98455 TTTACCTATG-TCTTTC-GAGATATATGGACAG-
1 TTTACCTATGTTC-TACGGA-ACATATGGACAGT
* *
98486 TATACCTATGTTCTAAGGAACATATGGACAGT
1 TTTACCTATGTTCTACGGAACATATGGACAGT
98518 T
1 T
98519 ACCGAGGATC
Statistics
Matches: 53, Mismatches: 6, Indels: 10
0.77 0.09 0.14
Matches are distributed among these distances:
31 25 0.47
32 28 0.53
ACGTcount: A:0.29, C:0.17, G:0.19, T:0.35
Consensus pattern (32 bp):
TTTACCTATGTTCTACGGAACATATGGACAGT
Found at i:98511 original size:31 final size:30
Alignment explanation
Indices: 98424--98521 Score: 108
Period size: 31 Copynumber: 3.2 Consensus size: 30
98414 AGTCGAGGGT
*
98424 TTACCTATGTTCTACGGAACATATGGACAG
1 TTACCTATGTTCTAAGGAACATATGGACAG
*** *
98454 TTTTACCTATG-TCTTTCGAGATATATGGACAG
1 --TTACCTATGTTCTAAGGA-ACATATGGACAG
98486 TATACCTATGTTCTAAGGAACATATGGACAG
1 T-TACCTATGTTCTAAGGAACATATGGACAG
98517 TTACC
1 TTACC
98522 GAGGATCTTT
Statistics
Matches: 55, Mismatches: 8, Indels: 8
0.77 0.11 0.11
Matches are distributed among these distances:
30 5 0.09
31 25 0.45
32 25 0.45
ACGTcount: A:0.30, C:0.18, G:0.18, T:0.34
Consensus pattern (30 bp):
TTACCTATGTTCTAAGGAACATATGGACAG
Found at i:98635 original size:29 final size:30
Alignment explanation
Indices: 98510--98632 Score: 212
Period size: 30 Copynumber: 4.1 Consensus size: 30
98500 AAGGAACATA
98510 TGGACAGTTACCGAGGATCTTTATGACCTC
1 TGGACAGTTACCGAGGATCTTTATGACCTC
98540 TGGACAGTTACCGAGGATCTTTATGACCTC
1 TGGACAGTTACCGAGGATCTTTATGACCTC
98570 TGGACAGTTACCGAGGATCTTTATGACCTC
1 TGGACAGTTACCGAGGATCTTTATGACCTC
* * *
98600 TGGATAGTTACC-AGGGTCTTTGTGACCTC
1 TGGACAGTTACCGAGGATCTTTATGACCTC
98629 TGGA
1 TGGA
98633 TAGGTCCTTC
Statistics
Matches: 90, Mismatches: 3, Indels: 1
0.96 0.03 0.01
Matches are distributed among these distances:
29 19 0.21
30 71 0.79
ACGTcount: A:0.22, C:0.22, G:0.25, T:0.31
Consensus pattern (30 bp):
TGGACAGTTACCGAGGATCTTTATGACCTC
Found at i:102482 original size:21 final size:21
Alignment explanation
Indices: 102456--102500 Score: 63
Period size: 21 Copynumber: 2.1 Consensus size: 21
102446 GATTTCTGGG
* *
102456 CAAGGGGAATCGGTACCCATT
1 CAAGGGGAACCGATACCCATT
*
102477 CAAGGGGAACCGATACCCCTT
1 CAAGGGGAACCGATACCCATT
102498 CAA
1 CAA
102501 ACGACAGAAT
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.31, C:0.29, G:0.24, T:0.16
Consensus pattern (21 bp):
CAAGGGGAACCGATACCCATT
Found at i:103373 original size:32 final size:32
Alignment explanation
Indices: 103332--103427 Score: 126
Period size: 32 Copynumber: 3.0 Consensus size: 32
103322 GAGTCGAGGG
103332 TTTACCTATGTTCTACGGAACATATGGACAGT
1 TTTACCTATGTTCTACGGAACATATGGACAGT
*
103364 TTTACCTATG-TCTTTC-GAGACATATGGACAG-
1 TTTACCTATGTTC-TACGGA-ACATATGGACAGT
* *
103395 TATACCTATGTTCTAAGGAACATATGGACAGT
1 TTTACCTATGTTCTACGGAACATATGGACAGT
103427 T
1 T
103428 ACCGAGGATC
Statistics
Matches: 55, Mismatches: 4, Indels: 10
0.80 0.06 0.14
Matches are distributed among these distances:
31 26 0.47
32 29 0.53
ACGTcount: A:0.29, C:0.18, G:0.19, T:0.34
Consensus pattern (32 bp):
TTTACCTATGTTCTACGGAACATATGGACAGT
Found at i:103455 original size:30 final size:30
Alignment explanation
Indices: 103419--103571 Score: 245
Period size: 30 Copynumber: 5.1 Consensus size: 30
103409 AAGGAACATA
103419 TGGACAGTTACCGAGGATCTTTATGACCTC
1 TGGACAGTTACCGAGGATCTTTATGACCTC
*
103449 TGGACAGTTACCAAGGATCTTTATGACCTC
1 TGGACAGTTACCGAGGATCTTTATGACCTC
*
103479 TGGACAGTTACCGATGATCTTTATGACCTC
1 TGGACAGTTACCGAGGATCTTTATGACCTC
103509 TGGACAGTTACCGAGGATCTTTATGACCTC
1 TGGACAGTTACCGAGGATCTTTATGACCTC
* * * *
103539 TGGATAGTTATCG-GGGTCTTTGTGACCTC
1 TGGACAGTTACCGAGGATCTTTATGACCTC
103568 TGGA
1 TGGA
103572 TAGGTCCTTC
Statistics
Matches: 115, Mismatches: 8, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
29 18 0.16
30 97 0.84
ACGTcount: A:0.22, C:0.22, G:0.24, T:0.32
Consensus pattern (30 bp):
TGGACAGTTACCGAGGATCTTTATGACCTC
Found at i:103853 original size:2 final size:2
Alignment explanation
Indices: 103843--103894 Score: 86
Period size: 2 Copynumber: 26.0 Consensus size: 2
103833 GTATGTGTGG
*
103843 AT AT GT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
*
103885 AT AT CT AT AT
1 AT AT AT AT AT
103895 GAAAGGTGCA
Statistics
Matches: 46, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
2 46 1.00
ACGTcount: A:0.46, C:0.02, G:0.02, T:0.50
Consensus pattern (2 bp):
AT
Found at i:108393 original size:2 final size:2
Alignment explanation
Indices: 108386--108412 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
108376 TTACGTGTAG
108386 TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA T
108413 TTAATTGAAA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:108694 original size:19 final size:19
Alignment explanation
Indices: 108667--108703 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
108657 ATGACCAACA
* *
108667 AAATTGCAATGCGATCTCT
1 AAATCGCAACGCGATCTCT
108686 AAATCGCAACGCGATCTC
1 AAATCGCAACGCGATCTC
108704 CATTATCGCA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 16 1.00
ACGTcount: A:0.32, C:0.27, G:0.16, T:0.24
Consensus pattern (19 bp):
AAATCGCAACGCGATCTCT
Found at i:108766 original size:21 final size:21
Alignment explanation
Indices: 108750--108801 Score: 61
Period size: 21 Copynumber: 2.5 Consensus size: 21
108740 TTTTGACCTT
108750 CGCATTGCGATTTTTGAAATC
1 CGCATTGCGATTTTTGAAATC
* *
108771 CGCGTTGCGATTTTAGATAAT-
1 CGCATTGCGATTTTTGA-AATC
*
108792 CGCAATGCGA
1 CGCATTGCGA
108802 ATATGTAAAT
Statistics
Matches: 26, Mismatches: 4, Indels: 2
0.81 0.12 0.06
Matches are distributed among these distances:
21 23 0.88
22 3 0.12
ACGTcount: A:0.25, C:0.19, G:0.23, T:0.33
Consensus pattern (21 bp):
CGCATTGCGATTTTTGAAATC
Found at i:108835 original size:41 final size:41
Alignment explanation
Indices: 108790--108900 Score: 134
Period size: 41 Copynumber: 2.7 Consensus size: 41
108780 ATTTTAGATA
108790 ATCGCAATGCGAATATGTA-AATCGCAACGCGATAACACGTG
1 ATCGCAATGCGAATATG-ACAATCGCAACGCGATAACACGTG
* * * *
108831 ATCGCAATGCGATTCTGACTATCGCAACGCGATAATACGTG
1 ATCGCAATGCGAATATGACAATCGCAACGCGATAACACGTG
* * * *
108872 ATCGCAACGCGATTTTGACTATCGCAACG
1 ATCGCAATGCGAATATGACAATCGCAACG
108901 AGATTCTAAC
Statistics
Matches: 63, Mismatches: 6, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
40 1 0.02
41 62 0.98
ACGTcount: A:0.32, C:0.24, G:0.22, T:0.23
Consensus pattern (41 bp):
ATCGCAATGCGAATATGACAATCGCAACGCGATAACACGTG
Found at i:108906 original size:61 final size:61
Alignment explanation
Indices: 108831--109022 Score: 228
Period size: 61 Copynumber: 3.1 Consensus size: 61
108821 ATAACACGTG
* * * *
108831 ATCGCAATGCGATTCTGACTATCGCAACGCGATAATACGTGATCGCAACGCGATTTTGACT
1 ATCGCAACGAGATTCTAACTATCGCAACGCGATAATACGTGATCGCAACGCGATTCTGACT
108892 ATCGCAACGAGATTCTAACTATCGCAACGCGATAATACGTGATCGCAACGCGATTCTGACT
1 ATCGCAACGAGATTCTAACTATCGCAACGCGATAATACGTGATCGCAACGCGATTCTGACT
* ** ** ** *
108953 ATCGCAACGCGATAAT-ACGTGATCATAACGCGATTCTGAC-T-ATCGCAACGAGATTCTGACT
1 ATCGCAACGAGATTCTAAC-T-ATCGCAACGCGATAAT-ACGTGATCGCAACGCGATTCTGACT
109014 ATCGCAACG
1 ATCGCAACG
109023 CGATAATACG
Statistics
Matches: 116, Mismatches: 12, Indels: 6
0.87 0.09 0.04
Matches are distributed among these distances:
60 2 0.02
61 99 0.85
62 13 0.11
63 2 0.02
ACGTcount: A:0.30, C:0.26, G:0.20, T:0.24
Consensus pattern (61 bp):
ATCGCAACGAGATTCTAACTATCGCAACGCGATAATACGTGATCGCAACGCGATTCTGACT
Found at i:108935 original size:102 final size:102
Alignment explanation
Indices: 108810--109057 Score: 433
Period size: 102 Copynumber: 2.4 Consensus size: 102
108800 GAATATGTAA
* *
108810 ATCGCAACGCGATAACACGTGATCGCAATGCGATTCTGACTATCGCAACGCGATAATACGTGATC
1 ATCGCAACGCGATAATACGTGATCGCAACGCGATTCTGACTATCGCAACGCGATAATACGTGATC
* *
108875 GCAACGCGATTTTGACTATCGCAACGAGATTCTAACT
66 ACAACGCGATTCTGACTATCGCAACGAGATTCTAACT
108912 ATCGCAACGCGATAATACGTGATCGCAACGCGATTCTGACTATCGCAACGCGATAATACGTGATC
1 ATCGCAACGCGATAATACGTGATCGCAACGCGATTCTGACTATCGCAACGCGATAATACGTGATC
* *
108977 ATAACGCGATTCTGACTATCGCAACGAGATTCTGACT
66 ACAACGCGATTCTGACTATCGCAACGAGATTCTAACT
*
109014 ATCGCAACGCGATAATACGTGATTGCAACGCGATTCTGACTATC
1 ATCGCAACGCGATAATACGTGATCGCAACGCGATTCTGACTATC
109058 TCATCACTGA
Statistics
Matches: 139, Mismatches: 7, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
102 139 1.00
ACGTcount: A:0.30, C:0.25, G:0.21, T:0.24
Consensus pattern (102 bp):
ATCGCAACGCGATAATACGTGATCGCAACGCGATTCTGACTATCGCAACGCGATAATACGTGATC
ACAACGCGATTCTGACTATCGCAACGAGATTCTAACT
Found at i:109023 original size:61 final size:61
Alignment explanation
Indices: 108872--109057 Score: 216
Period size: 61 Copynumber: 3.0 Consensus size: 61
108862 ATAATACGTG
* * * ** * **
108872 ATCGCAACGCGATTTTGACTATCGCAACGAGATTCTAAC-T-ATCGCAACGCGATAAT-ACGT
1 ATCGCAACGAGATTCTGACTATCGCAACGCGATAAT-ACGTGATCACAACGCGATTCTGAC-T
* *
108932 GATCGCAACGCGATTCTGACTATCGCAACGCGATAATACGTGATCATAACGCGATTCTGACT
1 -ATCGCAACGAGATTCTGACTATCGCAACGCGATAATACGTGATCACAACGCGATTCTGACT
**
108994 ATCGCAACGAGATTCTGACTATCGCAACGCGATAATACGTGATTGCAACGCGATTCTGACT
1 ATCGCAACGAGATTCTGACTATCGCAACGCGATAATACGTGATCACAACGCGATTCTGACT
109055 ATC
1 ATC
109058 TCATCACTGA
Statistics
Matches: 110, Mismatches: 12, Indels: 6
0.86 0.09 0.05
Matches are distributed among these distances:
60 2 0.02
61 93 0.85
62 13 0.12
63 2 0.02
ACGTcount: A:0.30, C:0.25, G:0.20, T:0.25
Consensus pattern (61 bp):
ATCGCAACGAGATTCTGACTATCGCAACGCGATAATACGTGATCACAACGCGATTCTGACT
Found at i:109042 original size:41 final size:40
Alignment explanation
Indices: 108810--109057 Score: 200
Period size: 41 Copynumber: 6.1 Consensus size: 40
108800 GAATATGTAA
* *
108810 ATCGCAACGCGATAA-CACGTGATCGCAATGCGATTCTGACT
1 ATCGCAACGCGATAATGAC-T-ATCGCAACGCGATTCTGACT
*
108851 ATCGCAACGCGATAAT-ACGTGATCGCAACGCGATTTTGACT
1 ATCGCAACGCGATAATGAC-T-ATCGCAACGCGATTCTGACT
* ** * **
108892 ATCGCAACGAGATTCTAACTATCGCAACGCGATAAT-ACGT
1 ATCGCAACGCGATAATGACTATCGCAACGCGATTCTGAC-T
** **
108932 GATCGCAACGCGATTCTGACTATCGCAACGCGATAAT-ACGT
1 -ATCGCAACGCGATAATGACTATCGCAACGCGATTCTGAC-T
** ** *
108973 GATCATAACGCGATTCTGACTATCGCAACGAGATTCTGACT
1 -ATCGCAACGCGATAATGACTATCGCAACGCGATTCTGACT
*
109014 ATCGCAACGCGATAAT-ACGTGATTGCAACGCGATTCTGACT
1 ATCGCAACGCGATAATGAC-T-ATCGCAACGCGATTCTGACT
109055 ATC
1 ATC
109058 TCATCACTGA
Statistics
Matches: 180, Mismatches: 20, Indels: 14
0.84 0.09 0.07
Matches are distributed among these distances:
39 4 0.02
40 28 0.16
41 144 0.80
42 4 0.02
ACGTcount: A:0.30, C:0.25, G:0.21, T:0.24
Consensus pattern (40 bp):
ATCGCAACGCGATAATGACTATCGCAACGCGATTCTGACT
Found at i:109907 original size:24 final size:24
Alignment explanation
Indices: 109880--109935 Score: 94
Period size: 24 Copynumber: 2.3 Consensus size: 24
109870 AGTATTCGAA
109880 AATTTGATCTTGGTCAATACCCGG
1 AATTTGATCTTGGTCAATACCCGG
*
109904 AATTTGATCTTGGTCAATACTCGG
1 AATTTGATCTTGGTCAATACCCGG
*
109928 ATTTTGAT
1 AATTTGAT
109936 GATGTTTCAG
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
24 30 1.00
ACGTcount: A:0.25, C:0.16, G:0.20, T:0.39
Consensus pattern (24 bp):
AATTTGATCTTGGTCAATACCCGG
Found at i:110154 original size:14 final size:14
Alignment explanation
Indices: 110125--110161 Score: 56
Period size: 14 Copynumber: 2.6 Consensus size: 14
110115 AGAAAAAGAA
110125 GAAGAAGAAATCCCC
1 GAAGAA-AAATCCCC
*
110140 GAAGAAAAGTCCCC
1 GAAGAAAAATCCCC
110154 GAAGAAAA
1 GAAGAAAA
110162 TGCCACGGGA
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
14 15 0.71
15 6 0.29
ACGTcount: A:0.51, C:0.22, G:0.22, T:0.05
Consensus pattern (14 bp):
GAAGAAAAATCCCC
Found at i:112222 original size:18 final size:18
Alignment explanation
Indices: 112199--112233 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
112189 AGCAAAAGGC
*
112199 AATCAAAATCGCAATCAA
1 AATCAAAATCCCAATCAA
112217 AATCAAAATCCCAATCA
1 AATCAAAATCCCAATCA
112234 CAACCGACTT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.54, C:0.26, G:0.03, T:0.17
Consensus pattern (18 bp):
AATCAAAATCCCAATCAA
Found at i:112439 original size:20 final size:20
Alignment explanation
Indices: 112414--112655 Score: 222
Period size: 20 Copynumber: 12.7 Consensus size: 20
112404 CACATTCATT
112414 TGACTATCGCAACGCGAATA
1 TGACTATCGCAACGCGAATA
*
112434 TGACTATCGCAACGCGACTA
1 TGACTATCGCAACGCGAATA
* *
112454 TGACTATCGCAACGTGAATT
1 TGACTATCGCAACGCGAATA
*
112474 TGAATATCGCAACAG-G---A
1 TGACTATCGCAAC-GCGAATA
* * *
112491 T-A--ATCGCAATGCAAATT
1 TGACTATCGCAACGCGAATA
*
112508 TGACTATCGCAACGCGAATT
1 TGACTATCGCAACGCGAATA
* *
112528 TGAATATCGCAACG-G--GA
1 TGACTATCGCAACGCGAATA
* *
112545 T-A--ATCGCAATGCGAAAA
1 TGACTATCGCAACGCGAATA
* *
112562 TGACTATCGCAACGCAAAAA
1 TGACTATCGCAACGCGAATA
112582 TGACTATCGCAACGCGAATA
1 TGACTATCGCAACGCGAATA
*
112602 TGACTATCGCAACGCGAATT
1 TGACTATCGCAACGCGAATA
* * *
112622 TAACTACCGCAACGCGAATT
1 TGACTATCGCAACGCGAATA
112642 TGACTATCGCAACG
1 TGACTATCGCAACG
112656 AGATAATCGC
Statistics
Matches: 183, Mismatches: 25, Indels: 28
0.78 0.11 0.12
Matches are distributed among these distances:
13 1 0.01
14 15 0.08
15 1 0.01
16 2 0.01
17 5 0.03
18 2 0.01
19 1 0.01
20 155 0.85
21 1 0.01
ACGTcount: A:0.36, C:0.24, G:0.19, T:0.21
Consensus pattern (20 bp):
TGACTATCGCAACGCGAATA
Found at i:112482 original size:40 final size:40
Alignment explanation
Indices: 112414--112703 Score: 206
Period size: 40 Copynumber: 7.7 Consensus size: 40
112404 CACATTCATT
* * *
112414 TGACTATCGCAACGCGAATATGACTATCGCAACGCGACTA
1 TGACTATCGCAACGCGAATTTGAATATCGCAACGCGAATA
*
112454 TGACTATCGCAACGTGAATTTGAATATCGCAACAG-G---A
1 TGACTATCGCAACGCGAATTTGAATATCGCAAC-GCGAATA
* * * *
112491 T-A--ATCGCAATGCAAATTTGACTATCGCAACGCGAATT
1 TGACTATCGCAACGCGAATTTGAATATCGCAACGCGAATA
* * * *
112528 TGAATATCGCAACG-GGA--T--A-ATCGCAATGCGAAAA
1 TGACTATCGCAACGCGAATTTGAATATCGCAACGCGAATA
* ** *
112562 TGACTATCGCAACGCAAAAATGACTATCGCAACGCGAATA
1 TGACTATCGCAACGCGAATTTGAATATCGCAACGCGAATA
* *
112602 TGACTATCGCAACGCGAATTT-AACTACCGCAACGCGAATT
1 TGACTATCGCAACGCGAATTTGAA-TATCGCAACGCGAATA
* *
112642 TGACTATCGCAACGAG-A--T--A-ATCGCAACGCGAATT
1 TGACTATCGCAACGCGAATTTGAATATCGCAACGCGAATA
* * * *
112676 TGATTATCGTAACGGGAATTTGACTATC
1 TGACTATCGCAACGCGAATTTGAATATC
112704 ACAATGAGAA
Statistics
Matches: 196, Mismatches: 33, Indels: 42
0.72 0.12 0.15
Matches are distributed among these distances:
33 1 0.01
34 77 0.39
35 2 0.01
36 2 0.01
37 7 0.04
38 1 0.01
39 3 0.02
40 102 0.52
41 1 0.01
ACGTcount: A:0.35, C:0.22, G:0.20, T:0.23
Consensus pattern (40 bp):
TGACTATCGCAACGCGAATTTGAATATCGCAACGCGAATA
Found at i:112521 original size:54 final size:54
Alignment explanation
Indices: 112439--112748 Score: 273
Period size: 54 Copynumber: 5.6 Consensus size: 54
112429 GAATATGACT
* * * * *
112439 ATCGCAACGCGACTATGACTATCGCAACGTGAATTTGAATATCGCAAC-AGGATA
1 ATCGCAACGCAAATTTGACTATCGCAACGCGAATTTGACTATCGCAACGA-GATA
* * *
112493 ATCGCAATGCAAATTTGACTATCGCAACGCGAATTTGAATATCGCAACGGGATA
1 ATCGCAACGCAAATTTGACTATCGCAACGCGAATTTGACTATCGCAACGAGATA
* * * ** *
112547 ATCGCAATGCGAAA-ATGACTATCGCAACGCAAAAATGACTATCGCAACGCGAATATGA
1 ATCGCAACGC-AAATTTGACTATCGCAACGCGAATTTGACTATCGCAA--CG-AGAT-A
* * *
112605 CTATCGCAACGCGAATTTAACTACCGCAACGCGAATTTGACTATCGCAACGAGATA
1 --ATCGCAACGCAAATTTGACTATCGCAACGCGAATTTGACTATCGCAACGAGATA
* * * * * * *
112661 ATCGCAACGCGAATTTGATTATCGTAACGGGAATTTGACTATCACAATGAGAAA
1 ATCGCAACGCAAATTTGACTATCGCAACGCGAATTTGACTATCGCAACGAGATA
* *** *
112715 ATCGCAAAGTGTATTAGACTATCGCAACGCGAAT
1 ATCGCAACGCAAATTTGACTATCGCAACGCGAAT
112749 ATGATGCAGA
Statistics
Matches: 210, Mismatches: 37, Indels: 18
0.79 0.14 0.07
Matches are distributed among these distances:
54 158 0.75
55 3 0.01
56 3 0.01
57 5 0.02
58 3 0.01
59 2 0.01
60 36 0.17
ACGTcount: A:0.36, C:0.22, G:0.20, T:0.22
Consensus pattern (54 bp):
ATCGCAACGCAAATTTGACTATCGCAACGCGAATTTGACTATCGCAACGAGATA
Found at i:112540 original size:74 final size:73
Alignment explanation
Indices: 112415--112622 Score: 240
Period size: 74 Copynumber: 2.8 Consensus size: 73
112405 ACATTCATTT
* * *
112415 GACTATCGCAACGCGAATATGACTATCGCAACGCGACTATGACTATCGCAACGTGAATTTGAATA
1 GACTATCGCAACGCAAATATGACTATCGCAACGCGAATATGACTATCGCAACGCGAATTTGAA-A
*
112480 T-CGCAACAG
65 TGCG-AAAAG
* * * * * * * *
112489 GA-TAATCGCAATGCAAATTTGACTATCGCAACGCGAATTTGAATATCGCAACGGGATAATCGCA
1 GACT-ATCGCAACGCAAATATGACTATCGCAACGCGAATATGACTATCGCAACGCGA-ATTTGAA
*
112553 ATGCGAAAAT
64 ATGCGAAAAG
*
112563 GACTATCGCAACGCAAAAATGACTATCGCAACGCGAATATGACTATCGCAACGCGAATTT
1 GACTATCGCAACGCAAATATGACTATCGCAACGCGAATATGACTATCGCAACGCGAATTT
112623 AACTACCGCA
Statistics
Matches: 110, Mismatches: 20, Indels: 9
0.79 0.14 0.06
Matches are distributed among these distances:
73 3 0.03
74 100 0.91
75 7 0.06
ACGTcount: A:0.36, C:0.23, G:0.20, T:0.22
Consensus pattern (73 bp):
GACTATCGCAACGCAAATATGACTATCGCAACGCGAATATGACTATCGCAACGCGAATTTGAAAT
GCGAAAAG
Found at i:112689 original size:20 final size:20
Alignment explanation
Indices: 112661--112703 Score: 59
Period size: 20 Copynumber: 2.1 Consensus size: 20
112651 CAACGAGATA
*
112661 ATCGCAACGCGAATTTGATT
1 ATCGCAACGCGAATTTGACT
* *
112681 ATCGTAACGGGAATTTGACT
1 ATCGCAACGCGAATTTGACT
112701 ATC
1 ATC
112704 ACAATGAGAA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.30, C:0.19, G:0.21, T:0.30
Consensus pattern (20 bp):
ATCGCAACGCGAATTTGACT
Found at i:112884 original size:36 final size:34
Alignment explanation
Indices: 112844--112923 Score: 114
Period size: 30 Copynumber: 2.4 Consensus size: 34
112834 TCAACTTTTA
112844 ATCAATTAAACAAGCACAAATAAGAATTATTTACAC
1 ATCAATTAAACAA--ACAAATAAGAATTATTTACAC
112880 ATCAATT----AAACAAATAAGAATTATTTACAC
1 ATCAATTAAACAAACAAATAAGAATTATTTACAC
112910 ATCAATTAAACAAA
1 ATCAATTAAACAAA
112924 TCAACTCTTA
Statistics
Matches: 40, Mismatches: 0, Indels: 10
0.80 0.00 0.20
Matches are distributed among these distances:
30 28 0.70
32 2 0.05
34 3 0.08
36 7 0.17
ACGTcount: A:0.55, C:0.15, G:0.04, T:0.26
Consensus pattern (34 bp):
ATCAATTAAACAAACAAATAAGAATTATTTACAC
Found at i:112893 original size:30 final size:30
Alignment explanation
Indices: 112859--112924 Score: 132
Period size: 30 Copynumber: 2.2 Consensus size: 30
112849 TTAAACAAGC
112859 ACAAATAAGAATTATTTACACATCAATTAA
1 ACAAATAAGAATTATTTACACATCAATTAA
112889 ACAAATAAGAATTATTTACACATCAATTAA
1 ACAAATAAGAATTATTTACACATCAATTAA
112919 ACAAAT
1 ACAAAT
112925 CAACTCTTAT
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 36 1.00
ACGTcount: A:0.55, C:0.14, G:0.03, T:0.29
Consensus pattern (30 bp):
ACAAATAAGAATTATTTACACATCAATTAA
Found at i:114351 original size:42 final size:41
Alignment explanation
Indices: 114304--114411 Score: 105
Period size: 42 Copynumber: 2.6 Consensus size: 41
114294 TCTAGAATGT
*
114304 TGGGAGGGACCTCTTCAACGATG-TCAGGGGCCTCTTGAACGG
1 TGGGAGGGACCTCTT-AACGATGAT-AGGGGCCTCTTGAACGA
* *
114346 TGGGAGGGGA-CTCTTAAGGGATGATAGGGGCCTTTTGAACGA
1 TGGGA-GGGACCTCTTAA-CGATGATAGGGGCCTCTTGAACGA
*
114388 TAGGAGAGG-CCTCTTGAACGATGA
1 TGGGAG-GGACCTCTT-AACGATGA
114412 AAGGTGAGTC
Statistics
Matches: 55, Mismatches: 5, Indels: 12
0.76 0.07 0.17
Matches are distributed among these distances:
41 3 0.05
42 45 0.82
43 7 0.13
ACGTcount: A:0.23, C:0.18, G:0.37, T:0.22
Consensus pattern (41 bp):
TGGGAGGGACCTCTTAACGATGATAGGGGCCTCTTGAACGA
Found at i:114353 original size:21 final size:21
Alignment explanation
Indices: 114304--114410 Score: 90
Period size: 21 Copynumber: 5.1 Consensus size: 21
114294 TCTAGAATGT
* *
114304 TGGGAGGGACCTCTTCAACGA
1 TGGGAGGGGCCTCTTGAACGA
** *
114325 TGTCAGGGGCCTCTTGAACGG
1 TGGGAGGGGCCTCTTGAACGA
* *
114346 TGGGAGGGGACTCTT-AAGGGA
1 TGGGAGGGGCCTCTTGAA-CGA
** *
114367 TGATAGGGGCCTTTTGAACGA
1 TGGGAGGGGCCTCTTGAACGA
* *
114388 TAGGAGAGGCCTCTTGAACGA
1 TGGGAGGGGCCTCTTGAACGA
114409 TG
1 TG
114411 AAAGGTGAGT
Statistics
Matches: 63, Mismatches: 21, Indels: 4
0.72 0.24 0.05
Matches are distributed among these distances:
20 2 0.03
21 59 0.94
22 2 0.03
ACGTcount: A:0.22, C:0.18, G:0.37, T:0.22
Consensus pattern (21 bp):
TGGGAGGGGCCTCTTGAACGA
Found at i:114848 original size:20 final size:20
Alignment explanation
Indices: 114823--114866 Score: 88
Period size: 20 Copynumber: 2.2 Consensus size: 20
114813 AATAGTTTCT
114823 GAAACTTAAAATCGCAACAC
1 GAAACTTAAAATCGCAACAC
114843 GAAACTTAAAATCGCAACAC
1 GAAACTTAAAATCGCAACAC
114863 GAAA
1 GAAA
114867 ATGATTATCG
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 24 1.00
ACGTcount: A:0.52, C:0.23, G:0.11, T:0.14
Consensus pattern (20 bp):
GAAACTTAAAATCGCAACAC
Found at i:114895 original size:20 final size:20
Alignment explanation
Indices: 114872--114924 Score: 88
Period size: 20 Copynumber: 2.6 Consensus size: 20
114862 CGAAAATGAT
114872 TATCGCAATGAGAATTTGAC
1 TATCGCAATGAGAATTTGAC
* *
114892 TATCGCAACGCGAATTTGAC
1 TATCGCAATGAGAATTTGAC
114912 TATCGCAATGAGA
1 TATCGCAATGAGA
114925 TAATCGCAAC
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
20 29 1.00
ACGTcount: A:0.34, C:0.19, G:0.21, T:0.26
Consensus pattern (20 bp):
TATCGCAATGAGAATTTGAC
Found at i:115169 original size:20 final size:20
Alignment explanation
Indices: 114984--115177 Score: 86
Period size: 20 Copynumber: 10.6 Consensus size: 20
114974 CGAAACTAAA
114984 TTCGCGTTGCGATAGTCATT
1 TTCGCGTTGCGATAGTCATT
*
115004 TTCGCATT--G-T-G--ATT
1 TTCGCGTTGCGATAGTCATT
* *
115018 ATC-CTGTTGCGATAGTCAAAT
1 TTCGC-GTTGCGATAGTC-ATT
115039 TT-GCGTTGCGATAGTCATT
1 TTCGCGTTGCGATAGTCATT
***
115058 TTCATATTGCGAT--T-A--
1 TTCGCGTTGCGATAGTCATT
* *
115073 -TCCCGTTGTGATAGTCATT
1 TTCGCGTTGCGATAGTCATT
* *
115092 TCCGCATTGCGATAGTCATT
1 TTCGCGTTGCGATAGTCATT
*
115112 TTCGCATTGCGAT--T-A--
1 TTCGCGTTGCGATAGTCATT
* **
115127 -TCCCGTTGCGATAGTCAAA
1 TTCGCGTTGCGATAGTCATT
*
115146 TTCGCGTTGCGATAATCATT
1 TTCGCGTTGCGATAGTCATT
*
115166 TTCGTGTTGCGA
1 TTCGCGTTGCGA
115178 CTATTCTTCT
Statistics
Matches: 127, Mismatches: 25, Indels: 44
0.65 0.13 0.22
Matches are distributed among these distances:
13 1 0.01
14 25 0.20
16 4 0.03
17 6 0.05
18 4 0.03
19 4 0.03
20 79 0.62
21 4 0.03
ACGTcount: A:0.20, C:0.20, G:0.22, T:0.39
Consensus pattern (20 bp):
TTCGCGTTGCGATAGTCATT
Found at i:115177 original size:54 final size:54
Alignment explanation
Indices: 114981--115169 Score: 281
Period size: 54 Copynumber: 3.5 Consensus size: 54
114971 ACGCGAAACT
* *
114981 AAATTCGCGTTGCGATAGTCATTTTCGCATTGTGATTATCCTGTTGCGATAGTC
1 AAATTCGCGTTGCGATAGTCATTTTCGCATTGCGATTATCCCGTTGCGATAGTC
* ** *
115035 AAATTTGCGTTGCGATAGTCATTTTCATATTGCGATTATCCCGTTGTGATAGTC
1 AAATTCGCGTTGCGATAGTCATTTTCGCATTGCGATTATCCCGTTGCGATAGTC
* *
115089 -ATTTCCGCATTGCGATAGTCATTTTCGCATTGCGATTATCCCGTTGCGATAGTC
1 AAATT-CGCGTTGCGATAGTCATTTTCGCATTGCGATTATCCCGTTGCGATAGTC
*
115143 AAATTCGCGTTGCGATAATCATTTTCG
1 AAATTCGCGTTGCGATAGTCATTTTCG
115170 TGTTGCGACT
Statistics
Matches: 118, Mismatches: 15, Indels: 4
0.86 0.11 0.03
Matches are distributed among these distances:
53 3 0.03
54 112 0.95
55 3 0.03
ACGTcount: A:0.21, C:0.20, G:0.21, T:0.39
Consensus pattern (54 bp):
AAATTCGCGTTGCGATAGTCATTTTCGCATTGCGATTATCCCGTTGCGATAGTC
Found at i:115355 original size:32 final size:31
Alignment explanation
Indices: 115296--115357 Score: 90
Period size: 31 Copynumber: 2.0 Consensus size: 31
115286 CTACTACCGA
115296 ATGAATTTACTAAGCAATCCAAAAGACAAAT
1 ATGAATTTACTAAGCAATCCAAAAGACAAAT
*
115327 ATGAATTTACTAACTTCAA-CCAAAAGACAAA
1 ATGAATTTACTAA--GCAATCCAAAAGACAAA
115358 ACAAAGACAA
Statistics
Matches: 28, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
31 13 0.46
32 12 0.43
33 3 0.11
ACGTcount: A:0.52, C:0.18, G:0.08, T:0.23
Consensus pattern (31 bp):
ATGAATTTACTAAGCAATCCAAAAGACAAAT
Found at i:117186 original size:20 final size:20
Alignment explanation
Indices: 117163--117218 Score: 85
Period size: 20 Copynumber: 2.8 Consensus size: 20
117153 TCTGAAACTT
117163 AAAATCGCAACACGAAAATG
1 AAAATCGCAACACGAAAATG
117183 AAAATCGCAACACGAAAATG
1 AAAATCGCAACACGAAAATG
** *
117203 ATTATCGCAACGCGAA
1 AAAATCGCAACACGAA
117219 TTTGACTATC
Statistics
Matches: 33, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
20 33 1.00
ACGTcount: A:0.50, C:0.21, G:0.16, T:0.12
Consensus pattern (20 bp):
AAAATCGCAACACGAAAATG
Found at i:117228 original size:20 final size:20
Alignment explanation
Indices: 117166--117228 Score: 72
Period size: 20 Copynumber: 3.1 Consensus size: 20
117156 GAAACTTAAA
**
117166 ATCGCAACACGAAAATGAAA
1 ATCGCAACACGAAAATGACT
*
117186 ATCGCAACACGAAAATGATT
1 ATCGCAACACGAAAATGACT
* **
117206 ATCGCAACGCGAATTTGACT
1 ATCGCAACACGAAAATGACT
117226 ATC
1 ATC
117229 ACAATGAGAT
Statistics
Matches: 37, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
20 37 1.00
ACGTcount: A:0.43, C:0.22, G:0.16, T:0.19
Consensus pattern (20 bp):
ATCGCAACACGAAAATGACT
Found at i:117682 original size:22 final size:22
Alignment explanation
Indices: 117655--117701 Score: 76
Period size: 22 Copynumber: 2.1 Consensus size: 22
117645 GAGATAGACA
* *
117655 GATTTCGTCGGAGATGGGGATG
1 GATTTCGTCGGAGATAGGGACG
117677 GATTTCGTCGGAGATAGGGACG
1 GATTTCGTCGGAGATAGGGACG
117699 GAT
1 GAT
117702 GTTGCCGTAG
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
22 23 1.00
ACGTcount: A:0.21, C:0.11, G:0.43, T:0.26
Consensus pattern (22 bp):
GATTTCGTCGGAGATAGGGACG
Found at i:117940 original size:20 final size:20
Alignment explanation
Indices: 117907--117963 Score: 60
Period size: 20 Copynumber: 2.8 Consensus size: 20
117897 GTGAATTTCG
**
117907 AAAATCGCAATGCGATGGTC
1 AAAATCGCGTTGCGATGGTC
** *
117927 AAAATCGCGTTGCGATTTTT
1 AAAATCGCGTTGCGATGGTC
117947 AAAATCCGCGTTGCGAT
1 AAAAT-CGCGTTGCGAT
117964 AATGGAGATC
Statistics
Matches: 31, Mismatches: 5, Indels: 1
0.84 0.14 0.03
Matches are distributed among these distances:
20 20 0.65
21 11 0.35
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.28
Consensus pattern (20 bp):
AAAATCGCGTTGCGATGGTC
Found at i:117992 original size:19 final size:19
Alignment explanation
Indices: 117930--118004 Score: 71
Period size: 19 Copynumber: 3.8 Consensus size: 19
117920 GATGGTCAAA
*
117930 ATCGCGTTGCGATTTTTA-AA
1 ATCGCGTTGCGA--TTTAGAG
* *
117950 ATCCGCGTTGCGATAATGGAG
1 AT-CGCGTTGCGAT-TTAGAG
117971 ATCGCGTTGCGATTTAGAG
1 ATCGCGTTGCGATTTAGAG
*
117990 ATCGCATTGCGATTT
1 ATCGCGTTGCGATTT
118005 TGTTGGTCAT
Statistics
Matches: 46, Mismatches: 6, Indels: 7
0.78 0.10 0.12
Matches are distributed among these distances:
19 19 0.41
20 14 0.30
21 13 0.28
ACGTcount: A:0.23, C:0.17, G:0.27, T:0.33
Consensus pattern (19 bp):
ATCGCGTTGCGATTTAGAG
Found at i:118482 original size:78 final size:77
Alignment explanation
Indices: 118352--118597 Score: 323
Period size: 78 Copynumber: 3.2 Consensus size: 77
118342 GGCTCGCAGT
* ** *
118352 GGAGTTCTTAATACCGCTAAGAGTTAAG-TTATGTCCCTCACCAGTGCTCGGCTTATGTCCCGCA
1 GGAGTTCTTAATACCGCCAAGAGTCGAGCTT-TGTCCCTCACCAGGGCTCGGCTTATGTCCCGCA
118416 CTAGGGCTTGGACC
65 C-AGGGCTTGGACC
* *
118430 AGAGTTCTTAATACCGCCAAGAGTCGAGCTTTGTCCCTCACCAGGGCTCGGCTTATGTCCCTCAG
1 GGAGTTCTTAATACCGCCAAGAGTCGAGCTTTGTCCCTCACCAGGGCTCGGCTTATGTCCCGCA-
118495 CAGGGCTTGGACC
65 CAGGGCTTGGACC
* * * * * * *
118508 GGAGTTCTTAATTCCACCAAGAGTCGAGCTATCTCCCTCTCCAGGGATTGGCTTATGTCCCGCAC
1 GGAGTTCTTAATACCGCCAAGAGTCGAGCTTTGTCCCTCACCAGGGCTCGGCTTATGTCCCGCA-
*
118573 CGGGGCTTGGACC
65 CAGGGCTTGGACC
118586 GGAGTTCTTAAT
1 GGAGTTCTTAAT
118598 GCCTCCGAGG
Statistics
Matches: 149, Mismatches: 17, Indels: 4
0.88 0.10 0.02
Matches are distributed among these distances:
78 146 0.98
79 3 0.02
ACGTcount: A:0.20, C:0.28, G:0.25, T:0.27
Consensus pattern (77 bp):
GGAGTTCTTAATACCGCCAAGAGTCGAGCTTTGTCCCTCACCAGGGCTCGGCTTATGTCCCGCAC
AGGGCTTGGACC
Found at i:118488 original size:24 final size:23
Alignment explanation
Indices: 118457--118501 Score: 72
Period size: 24 Copynumber: 1.9 Consensus size: 23
118447 CAAGAGTCGA
118457 GCTTTGTCCCTCACCAGGGCTCG
1 GCTTTGTCCCTCACCAGGGCTCG
*
118480 GCTTATGTCCCTCAGCAGGGCT
1 GCTT-TGTCCCTCACCAGGGCT
118502 TGGACCGGAG
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
23 4 0.20
24 16 0.80
ACGTcount: A:0.11, C:0.36, G:0.27, T:0.27
Consensus pattern (23 bp):
GCTTTGTCCCTCACCAGGGCTCG
Done.