Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003329.1 Hibiscus syriacus cultivar Beakdansim tig00007010_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  132996

Tables:   1   

This is table  1  of  1  ( 39 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
6641--6711
26
2.7
26
88
0
106
40
18
21
19
1.91
6776--6815
21
1.9
21
94
0
71
27
27
20
25
1.99
7213--7374
44
3.6
44
94
2
270
30
21
8
39
1.83
7478--7676
40
5.0
40
96
0
335
34
26
16
23
1.95
9081--9107
4
6.8
4
100
0
54
25
0
0
74
0.83
19113--19141
15
1.9
15
100
0
58
13
0
24
62
1.32
20890--20959
32
2.2
32
86
0
104
22
34
7
35
1.82
21284--21576
155
1.9
154
90
6
468
42
10
17
29
1.83
22634--22764
65
2.0
65
96
0
244
38
19
17
25
1.93
23842--23885
7
6.4
7
89
5
72
29
27
27
15
1.96
23842--23885
20
2.1
21
91
4
72
29
27
27
15
1.96
23883--23913
14
2.2
14
94
0
53
3
22
45
29
1.68
34630--34866
65
3.7
62
76
12
201
29
23
19
27
1.98
34812--34860
19
2.6
19
84
9
57
24
28
20
26
1.99
36770--36809
21
1.9
21
89
0
62
55
7
7
30
1.56
38929--38969
20
2.0
20
90
9
66
41
9
4
43
1.59
38929--38969
18
2.2
20
86
8
59
41
9
4
43
1.59
45796--45836
20
2.0
20
86
9
57
39
9
7
43
1.65
46055--46149
15
6.3
15
85
0
127
29
30
22
17
1.97
51299--51342
21
2.1
21
82
0
52
9
43
15
31
1.79
52452--52611
65
2.5
66
84
5
202
31
23
18
26
1.97
55564--55601
19
2.1
18
85
14
51
42
2
10
44
1.52
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
63006--63386
139
2.7
138
78
5
383
45
14
12
27
1.81
78327--78361
2
18.0
2
94
5
63
51
0
0
48
1.00
79707--79785
39
2.0
39
95
0
140
27
12
15
44
1.82
88424--88479
15
3.7
15
83
9
78
50
14
16
19
1.79
88422--88479
30
1.9
30
92
0
98
50
13
17
18
1.79
90851--91053
34
6.1
33
67
25
97
47
4
5
42
1.46
90890--91014
65
2.0
63
85
6
171
45
5
5
43
1.51
90953--91083
69
1.9
71
84
9
180
47
4
6
41
1.49
98407--98440
12
2.9
12
86
4
52
50
8
11
29
1.69
99470--99539
28
2.6
26
78
14
70
11
22
4
61
1.47
104433--104466
12
2.9
12
86
4
52
50
8
11
29
1.69
109124--109172
24
2.0
24
96
0
89
10
24
2
63
1.37
112646--112678
17
1.9
17
100
0
66
48
12
6
33
1.65
125412--125525
38
3.1
38
71
10
101
50
1
7
41
1.40
131190--131263
33
2.2
32
83
9
87
59
14
0
25
1.36
131459--131501
6
7.2
6
89
0
68
2
44
16
37
1.60
131814--131877
27
2.4
27
81
0
83
15
15
50
18
1.79

Tables:   1

The End!