genome.fa.s333.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000333.1 Hibiscus syriacus cultivar Beakdansim tig00000617_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  88375

Tables:   1   

This is table  1  of  1  ( 80 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3351--3390	21	1.9	21	85	10	55	35	10	2	52	1.48
17665--17716	19	2.7	19	93	0	86	28	23	28	19	1.98
18515--18545	2	15.5	2	100	0	62	51	0	0	48	1.00
18960--19003	21	2.1	21	83	8	54	36	15	38	9	1.80
19905--20129	64	3.5	64	78	4	197	31	19	21	28	1.97
20785--20864	31	2.6	31	95	0	142	17	18	22	41	1.90
23480--23621	64	2.2	64	80	5	153	30	20	19	28	1.97
24342--24486	31	4.7	31	95	0	263	19	18	22	39	1.93
27911--27955	21	2.1	21	87	0	63	31	28	24	15	1.96
28308--28347	18	2.4	16	87	8	53	37	5	17	40	1.72
28308--28348	16	2.4	18	88	8	59	36	4	17	41	1.71
28767--28891	31	4.0	31	93	2	198	20	19	22	37	1.94
34800--34942	64	2.2	63	80	10	157	27	21	23	27	1.99
34820--34962	65	2.2	64	83	6	173	25	20	24	29	1.99
34930--34982	19	2.8	19	97	0	97	16	16	35	30	1.92
36051--36117	31	2.2	31	89	2	100	37	16	25	20	1.93
37124--37190	31	2.2	31	88	0	98	22	29	11	35	1.90
41563--41604	18	2.2	19	91	8	68	57	0	4	38	1.20
43039--43090	21	2.5	21	81	3	61	38	19	25	17	1.93
43079--43132	20	2.7	20	91	0	90	31	22	18	27	1.97
43687--43736	18	2.7	19	87	6	75	48	24	18	10	1.78
43732--43810	19	4.1	19	90	3	122	12	22	17	46	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43732--43810	39	2.1	38	90	2	122	12	22	17	46	1.82
45896--46070	42	4.2	42	77	1	190	21	37	17	24	1.93
45965--46085	21	5.8	21	65	7	57	22	33	19	23	1.97
45896--46070	83	2.1	83	97	1	332	21	37	17	24	1.93
45896--46090	42	4.7	42	72	5	162	21	36	17	23	1.94
45896--46100	84	2.5	83	89	4	279	23	35	18	23	1.96
47585--47651	19	3.8	19	73	18	72	44	19	22	13	1.85
47586--47660	19	4.2	19	73	16	70	42	20	21	16	1.89
47656--47773	19	6.7	19	65	19	67	16	22	21	40	1.91
47659--47753	33	2.9	31	86	9	136	15	22	21	41	1.90
50035--50071	12	3.1	12	100	0	74	0	27	0	72	0.84
51081--51132	21	2.5	21	87	3	70	38	17	23	21	1.93
51121--51195	20	3.7	20	72	13	62	37	22	18	21	1.94
51160--51209	20	2.5	20	76	0	64	38	20	18	24	1.93
51423--51490	20	3.4	20	68	8	66	38	25	20	16	1.92
51539--51584	19	2.4	19	92	0	83	13	21	17	47	1.81
51721--51757	14	2.6	14	86	0	56	48	21	0	29	1.50
53178--53260	42	2.0	42	90	0	130	20	14	43	21	1.87
53625--53693	20	3.5	20	84	2	77	43	21	20	14	1.87
53684--53742	14	3.9	14	72	20	55	49	20	16	13	1.80
53668--53757	33	2.8	33	96	1	164	46	20	18	14	1.83
53753--53834	18	4.6	19	76	14	95	14	20	19	45	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53821--53865	20	2.2	20	84	0	54	17	20	20	42	1.90
54355--54399	18	2.5	18	88	0	72	13	15	44	26	1.83
55720--55783	20	3.2	20	84	0	74	43	20	18	17	1.88
56026--56069	22	2.0	22	95	0	79	18	15	45	20	1.85
56237--56371	20	6.7	20	80	7	121	24	17	24	33	1.96
56237--56374	61	2.3	61	85	0	195	23	17	23	34	1.96
56442--56482	21	2.0	21	85	0	55	34	29	17	19	1.94
60143--60213	21	3.5	20	80	5	79	56	0	2	40	1.14
61220--61257	19	2.0	19	85	10	51	55	5	2	36	1.37
63497--63883	183	2.1	184	93	2	656	42	2	8	46	1.48
64074--64122	5	10.0	5	82	4	64	75	0	0	24	0.80
64090--64131	20	2.1	20	100	0	84	71	0	0	28	0.86
64096--64131	10	3.6	10	84	0	54	69	0	0	30	0.89
65098--65842	249	3.0	250	97	1	1392	17	11	26	44	1.83
65098--65842	125	6.0	125	98	0	1392	17	11	26	44	1.83
69562--69597	15	2.4	15	90	0	54	2	2	69	25	1.15
69563--69600	12	3.2	12	92	0	58	2	2	73	21	1.07
75926--76005	29	2.8	29	96	0	142	31	36	25	7	1.84
76342--76433	21	4.3	21	78	5	103	19	27	25	28	1.99
76807--76846	21	1.9	21	89	0	62	25	0	17	57	1.40
77346--77376	16	1.9	16	93	0	53	48	0	9	41	1.36
77367--77411	23	2.0	23	82	4	56	42	0	8	48	1.34
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
79116--79168	23	2.4	21	84	6	61	37	1	1	58	1.20
79128--79167	17	2.4	17	86	0	62	40	0	0	60	0.97
79038--79186	54	2.7	56	83	6	203	40	2	6	51	1.41
81486--81534	22	2.2	22	89	7	73	38	14	2	44	1.56
81478--81603	30	4.4	29	74	19	99	45	11	1	41	1.51
81784--81823	21	1.9	21	100	0	80	57	15	0	27	1.38
81851--81905	18	3.4	18	65	31	52	52	9	0	38	1.33
81906--81962	29	2.0	29	83	10	73	43	8	0	47	1.34
81920--81996	34	2.2	36	82	13	97	48	9	0	42	1.35
82016--82077	28	2.3	28	86	8	85	46	16	1	35	1.56
82481--82564	29	2.9	28	87	7	114	17	29	28	23	1.97
82645--82733	29	3.1	29	93	0	160	17	40	25	15	1.90
84973--85016	21	2.0	22	91	4	72	31	29	25	13	1.94
85828--85885	20	2.7	20	86	10	71	24	22	24	29	1.99

Tables:   1

The End!