Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003330.1 Hibiscus syriacus cultivar Beakdansim tig00007011_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  62341

Tables:   1   

This is table  1  of  1  ( 30 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
6541--6578
14
2.5
15
83
12
51
78
2
0
18
0.86
11196--11252
29
2.0
29
100
0
114
26
21
10
42
1.85
11248--11565
68
4.8
68
84
3
423
32
23
14
29
1.94
11250--11560
133
2.3
136
85
4
436
32
23
14
28
1.94
11747--11897
55
2.8
54
87
7
198
33
18
12
35
1.89
13934--14381
54
8.3
54
81
4
429
30
15
17
36
1.91
13931--14381
221
2.1
213
80
7
487
30
15
17
36
1.91
18712--18762
23
2.2
24
80
16
63
21
9
5
62
1.47
20606--20638
12
2.8
12
90
4
50
30
9
21
39
1.84
22528--22556
14
2.1
14
100
0
58
51
6
6
34
1.55
28521--28751
109
2.1
111
77
12
260
45
14
16
22
1.84
29175--29234
2
30.0
2
100
0
120
50
0
0
50
1.00
29691--29804
3
37.3
3
87
3
165
61
0
2
35
1.10
30879--30991
42
2.7
42
78
8
115
30
15
23
29
1.96
30655--31229
239
2.4
238
88
2
857
33
16
18
31
1.93
31123--31236
42
2.7
41
77
4
111
30
19
21
28
1.97
31231--31369
58
2.4
57
79
10
158
40
19
10
30
1.84
31397--31815
55
7.6
55
83
4
452
40
14
10
34
1.80
31397--31791
111
3.6
110
84
4
476
41
14
9
34
1.79
31772--31872
52
1.9
54
84
11
138
36
15
12
34
1.86
35859--36093
45
5.3
45
88
4
343
22
19
17
40
1.91
35881--36093
86
2.4
87
90
3
329
23
19
16
40
1.91
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
38323--38370
25
2.0
24
83
4
60
27
27
4
41
1.74
40847--40879
17
2.0
17
88
5
50
6
15
6
72
1.24
40801--40876
27
3.0
26
72
14
68
6
14
2
76
1.10
46301--46344
22
2.0
23
81
4
54
38
22
15
22
1.92
48591--48828
45
5.2
45
83
5
255
24
18
14
43
1.87
48591--48823
92
2.6
92
81
2
256
24
17
14
43
1.86
53016--53077
29
2.2
28
85
8
81
59
8
16
16
1.59
55306--55545
110
2.2
110
84
5
324
48
14
14
22
1.80

Tables:   1

The End!