Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003332.1 Hibiscus syriacus cultivar Beakdansim tig00007013_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  82712

Tables:   1   

This is table  1  of  1  ( 50 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1510--1711
74
2.7
74
88
8
290
59
12
0
26
1.39
6145--6184
19
2.1
19
85
0
53
60
12
10
17
1.59
6618--6675
28
2.1
26
81
9
62
44
1
0
53
1.10
7867--7896
3
10.0
3
100
0
60
66
0
0
33
0.92
10676--10740
32
2.0
32
82
5
78
53
0
3
43
1.16
10767--10803
19
1.9
19
88
0
56
43
8
2
45
1.47
10774--10819
23
2.0
23
83
8
58
43
6
2
47
1.41
11427--11479
2
27.5
2
92
7
92
49
0
0
50
1.00
11489--11527
19
2.1
19
100
0
78
43
5
15
35
1.69
12830--12912
43
1.9
43
100
0
166
34
13
18
33
1.89
12994--13032
2
19.5
2
94
0
69
46
0
2
51
1.14
12996--13078
6
13.8
6
80
0
58
36
2
13
48
1.55
13531--13573
2
22.0
2
95
4
79
51
0
0
48
1.00
13949--13985
2
19.5
2
89
10
60
51
0
0
48
1.00
13951--13985
15
2.3
15
95
0
61
51
0
0
48
1.00
15563--15601
19
2.0
21
85
10
55
23
7
10
58
1.56
19065--19153
30
3.0
30
70
9
83
50
4
1
43
1.29
19436--19489
22
2.5
20
80
16
63
46
0
1
51
1.11
20622--20675
20
2.7
20
94
2
90
40
3
12
42
1.61
20676--20721
13
3.6
13
82
11
60
58
0
0
41
0.98
23708--23748
8
5.2
8
82
5
57
34
0
29
36
1.58
23816--24293
126
3.8
126
96
0
877
22
25
20
32
1.98
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
24681--24780
33
3.0
34
83
2
139
39
3
4
54
1.35
25298--25391
21
4.5
21
92
5
129
20
26
35
18
1.95
25395--25442
21
2.3
21
85
0
60
22
12
39
25
1.89
27163--27251
34
2.7
32
75
10
90
58
2
0
39
1.11
27166--27238
15
4.7
15
70
18
51
58
1
0
39
1.06
29641--29692
19
2.7
19
74
8
52
65
0
0
34
0.93
29649--29739
17
4.8
18
69
15
60
60
1
1
37
1.11
29718--29768
24
2.0
24
81
11
57
54
0
0
45
0.99
38232--38284
2
26.5
2
100
0
106
50
0
0
49
1.00
38813--38856
3
15.3
3
86
9
65
34
0
0
65
0.93
41443--41477
15
2.3
15
95
0
61
17
22
31
28
1.96
43842--43899
2
29.0
2
100
0
116
50
0
0
50
1.00
44609--44727
60
2.0
60
88
3
177
42
21
10
25
1.85
46132--46173
18
2.3
18
100
0
84
19
40
16
23
1.91
51954--51989
17
2.1
17
90
10
56
50
0
11
38
1.38
52370--52396
2
13.5
2
100
0
54
48
0
0
51
1.00
54054--54079
2
13.0
2
100
0
52
50
0
0
50
1.00
54667--54712
21
2.2
21
92
0
74
34
23
17
23
1.96
64150--64176
14
1.9
14
100
0
54
51
3
0
44
1.19
64847--64910
29
2.2
28
78
8
74
50
4
9
35
1.56
65355--65416
21
3.0
21
85
0
88
56
3
4
35
1.37
65648--65681
18
1.9
18
88
5
52
26
32
26
14
1.95
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
66962--67077
57
2.0
57
94
0
205
43
7
2
45
1.46
69951--70029
2
40.0
2
87
2
115
1
53
0
45
1.08
71027--71071
12
3.8
12
77
11
56
28
6
28
35
1.83
71015--71096
24
3.3
24
73
14
69
31
3
32
31
1.75
71026--71098
12
5.8
12
70
19
51
31
4
31
32
1.77
82584--82646
24
2.7
24
87
2
92
33
25
22
19
1.97

Tables:   1

The End!