genome.fa.s3333.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003333.1 Hibiscus syriacus cultivar Beakdansim tig00007016_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  168441

Tables:   1   

This is table  1  of  1  ( 62 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1534--1601	28	2.5	28	78	7	68	27	8	0	63	1.24
1809--1846	18	2.2	17	86	9	51	7	2	7	81	0.96
3185--3248	20	3.2	20	86	8	78	28	4	25	42	1.75
3628--3653	13	2.0	13	100	0	52	53	0	0	46	1.00
4971--5019	6	8.0	6	97	2	89	65	18	0	16	1.28
5594--5625	13	2.6	12	95	5	55	50	0	0	50	1.00
5932--5990	24	2.6	22	86	7	75	45	0	0	54	0.99
5923--5988	21	3.0	21	73	10	62	46	0	1	51	1.10
6380--6414	17	1.9	18	88	11	54	48	5	0	45	1.26
10361--10385	10	2.5	10	100	0	50	36	28	0	36	1.58
12136--12189	18	3.0	18	94	0	90	27	27	18	25	1.98
23071--23101	14	2.3	13	94	5	53	0	12	12	74	1.08
24356--24381	13	2.0	13	100	0	52	30	30	7	30	1.85
24542--24612	25	2.9	26	79	10	87	42	4	0	53	1.20
24542--24630	23	3.5	26	80	13	96	42	3	0	53	1.17
24790--24854	31	2.1	31	97	0	121	50	9	9	30	1.65
37738--37821	41	2.0	41	100	0	168	21	20	26	32	1.98
46386--46426	21	1.9	21	85	14	57	65	4	12	17	1.42
47556--47596	19	2.0	20	86	9	57	17	19	21	41	1.90
57428--57468	16	2.6	16	92	3	66	36	9	21	31	1.86
57521--57584	28	2.5	25	79	16	69	28	14	15	42	1.86
57571--57614	15	2.9	15	93	0	70	29	25	20	25	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
63131--63347	118	1.8	118	92	0	371	28	9	16	46	1.78
64711--64756	24	2.0	23	83	12	58	41	2	13	43	1.55
64845--64878	16	2.2	16	89	5	52	44	0	0	55	0.99
65494--65550	2	28.5	2	100	0	114	50	0	0	49	1.00
67856--67908	20	3.1	16	82	17	63	22	26	11	39	1.88
67877--67914	20	1.9	20	100	0	76	23	28	10	36	1.88
69721--70026	149	2.1	149	95	0	549	34	21	17	26	1.96
71646--71690	21	2.1	21	87	0	63	15	24	28	31	1.96
80314--80342	15	2.0	15	93	6	51	48	3	0	48	1.18
81679--81737	24	2.5	24	97	0	109	13	13	59	13	1.62
81949--82131	54	3.6	51	78	13	207	24	11	37	26	1.89
81949--82029	27	3.0	28	64	20	71	23	13	35	27	1.92
82007--82093	45	1.9	45	90	0	138	22	10	37	28	1.87
81953--82131	99	1.8	99	90	0	286	24	11	37	26	1.89
82402--82457	27	2.1	27	83	12	71	16	1	46	35	1.57
86104--86137	13	2.5	14	80	9	52	58	0	0	41	0.98
98198--98237	21	1.9	21	94	0	71	15	25	25	35	1.94
99400--99472	23	3.3	23	76	3	78	30	21	23	24	1.99
99484--99701	103	2.1	103	100	0	436	36	23	13	26	1.92
101136--101179	21	2.1	21	86	0	61	15	27	27	29	1.96
104196--104241	23	2.0	23	95	0	83	26	36	13	23	1.91
106143--106178	15	2.6	15	83	16	51	30	0	0	69	0.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
107133--107196	21	3.0	20	75	8	65	51	1	4	42	1.32
108954--108982	15	1.9	15	100	0	58	37	13	0	48	1.43
110876--110930	24	2.2	24	84	9	67	32	5	7	54	1.51
110945--110986	22	1.9	22	100	0	84	26	0	9	64	1.24
111572--111605	9	3.9	9	84	7	52	64	0	0	35	0.94
111556--111612	17	3.5	16	81	9	62	63	1	0	35	1.05
111551--111619	33	2.2	31	82	10	77	66	1	0	31	1.00
118052--118104	24	2.2	24	100	0	106	43	15	7	33	1.74
124845--124883	20	2.0	20	89	0	60	33	10	23	33	1.88
125197--125246	25	1.9	27	88	8	77	18	32	34	16	1.92
125710--125748	21	1.9	20	84	5	51	10	2	15	71	1.23
148190--148241	20	2.7	19	75	21	54	65	1	3	28	1.21
148624--148672	18	2.8	17	78	3	53	67	0	8	24	1.18
148624--148673	21	2.3	21	79	6	55	68	0	8	24	1.16
148696--148760	34	2.0	32	87	6	94	58	3	1	36	1.23
165109--165153	18	2.6	18	89	3	65	53	6	0	40	1.27
165444--165607	76	2.1	76	94	3	285	38	16	10	34	1.83
167190--167244	23	2.4	23	100	0	110	49	12	30	7	1.68

Tables:   1

The End!