Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003334.1 Hibiscus syriacus cultivar Beakdansim tig00007018_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  103804

Tables:   1   

This is table  1  of  1  ( 49 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4075--4103
2
14.5
2
100
0
58
48
0
0
51
1.00
4696--4731
3
12.0
3
93
0
63
63
0
2
33
1.08
7326--7389
2
32.0
2
100
0
128
50
0
0
50
1.00
7646--7670
13
1.9
13
100
0
50
80
0
4
16
0.87
7669--7719
2
25.5
2
100
0
102
50
0
0
49
1.00
10299--10341
20
2.1
21
86
4
61
30
20
25
23
1.99
10799--10857
15
3.7
15
77
20
50
37
13
3
45
1.60
10816--10866
18
2.9
18
77
11
52
37
13
1
47
1.55
11112--11156
22
2.0
22
82
4
54
26
22
17
33
1.96
11118--11177
22
2.7
22
79
5
68
26
25
18
30
1.98
11614--11645
2
16.0
2
100
0
64
50
0
0
50
1.00
16439--16499
22
2.8
22
82
5
70
24
24
21
29
1.99
23071--23116
17
2.6
17
79
3
56
43
2
2
52
1.25
31906--31963
29
2.0
30
82
3
73
46
13
5
34
1.66
33879--33942
21
3.0
21
84
4
92
25
26
21
26
2.00
34075--34119
22
2.0
23
82
4
56
33
0
13
53
1.40
34479--34545
30
2.2
30
97
2
125
31
5
16
46
1.71
34690--34733
22
2.0
22
86
0
61
25
22
11
40
1.87
35423--36271
424
2.0
423
98
0
1653
46
8
6
38
1.61
36608--36654
17
2.8
17
93
0
85
34
17
19
29
1.94
37138--37338
102
2.0
102
90
0
321
29
20
11
37
1.89
37528--37598
37
1.9
37
97
0
133
25
9
12
52
1.70
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
41428--41456
2
15.0
2
92
7
51
48
0
0
51
1.00
43176--43244
15
4.4
17
66
28
53
55
0
1
43
1.08
43164--43213
19
2.6
19
83
3
55
54
0
0
46
1.00
46700--46734
16
2.2
16
90
5
54
54
8
0
37
1.31
47130--47158
11
2.5
12
88
11
51
34
31
6
27
1.83
48170--48248
32
2.5
32
87
4
115
53
11
15
20
1.72
51431--51466
18
2.0
18
94
0
63
44
16
19
19
1.87
61566--61873
156
2.0
156
88
1
465
47
12
13
25
1.78
63199--63245
19
2.5
19
92
0
76
61
2
2
34
1.20
68051--68088
2
19.0
2
100
0
76
50
0
0
50
1.00
71493--71548
20
2.8
20
97
0
103
23
19
10
46
1.81
71845--71880
2
18.0
2
100
0
72
50
0
0
50
1.00
72081--72122
15
2.8
15
100
0
84
26
7
11
54
1.62
80878--81096
117
1.9
117
87
3
325
38
18
10
32
1.85
81521--81576
26
2.3
24
82
14
71
35
5
3
55
1.40
81577--81651
29
2.5
30
78
8
71
40
5
1
53
1.32
81641--81688
2
24.0
2
100
0
96
50
0
0
50
1.00
81742--81902
30
5.6
27
75
13
110
53
1
6
38
1.36
81726--81873
30
5.0
30
74
12
119
54
1
7
36
1.37
90019--90096
41
1.9
41
94
0
138
33
35
6
24
1.81
90879--90949
2
36.0
2
97
2
135
50
0
0
49
1.00
90878--90959
8
11.3
7
91
7
80
53
0
0
46
1.00
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
92212--92255
16
2.9
15
86
10
54
79
4
2
13
0.98
93303--93350
23
2.1
23
84
0
60
20
8
20
50
1.74
97149--97198
16
3.3
16
67
16
52
56
2
6
36
1.36
97137--97198
29
2.2
29
94
2
108
54
4
6
33
1.47
103046--103117
31
2.5
27
80
15
74
34
23
23
18
1.96

Tables:   1

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