genome.fa.s3335.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003335.1 Hibiscus syriacus cultivar Beakdansim tig00007019_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  149161

Tables:   1   

This is table  1  of  1  ( 94 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
724--799	38	2.0	38	100	0	152	31	18	7	42	1.79
5118--5225	30	3.7	29	75	7	92	46	5	6	41	1.53
5114--5228	59	1.9	59	87	0	167	44	5	7	42	1.55
5151--5228	30	2.7	29	82	4	93	47	5	8	38	1.57
5144--5231	29	3.0	29	81	3	113	43	4	7	44	1.54
5370--5407	20	1.9	20	84	10	51	42	0	0	57	0.98
10613--10673	31	1.9	33	90	6	99	45	22	0	31	1.53
14600--14634	2	17.5	2	100	0	70	48	0	0	51	1.00
23822--23892	22	3.3	21	74	14	74	25	0	18	56	1.42
25526--25571	16	2.9	17	72	24	55	47	0	0	52	1.00
26728--26757	2	15.0	2	100	0	60	50	0	0	50	1.00
28228--28269	21	2.0	21	100	0	84	14	23	23	38	1.92
28231--28276	21	2.2	21	92	0	74	15	26	23	34	1.94
29523--29570	17	2.9	17	75	3	53	50	0	0	50	1.00
29743--29860	32	3.7	32	82	0	146	49	10	11	28	1.72
31586--31646	28	2.1	28	84	6	77	47	1	4	45	1.34
32072--32102	13	2.5	13	94	5	55	48	0	0	51	1.00
36655--36695	20	2.0	20	86	9	57	75	0	0	24	0.80
36710--36916	37	5.6	36	85	6	238	47	5	1	44	1.38
36893--36954	27	2.3	26	83	5	88	46	4	1	46	1.33
36857--36983	67	1.9	65	87	4	184	45	5	2	46	1.39
37677--38859	84	14.2	82	79	6	1089	24	20	25	29	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37677--38858	165	7.1	166	80	7	1042	24	20	25	29	1.99
37612--38858	249	5.0	249	84	4	1011	24	20	24	30	1.99
41262--41289	14	2.0	14	100	0	56	50	0	0	50	1.00
42950--43051	11	8.9	11	70	17	57	31	18	21	28	1.97
42961--43045	23	3.7	23	83	0	116	32	18	21	27	1.97
43075--43154	31	2.6	31	95	0	151	20	16	21	42	1.89
45499--45654	65	2.4	66	95	1	278	35	24	21	18	1.95
46827--46928	50	2.1	50	92	1	170	16	33	31	18	1.94
51991--52031	4	10.8	4	89	10	52	73	0	0	26	0.84
51971--52043	26	2.8	26	82	12	80	72	0	4	23	1.01
52060--52388	38	8.6	37	82	10	328	48	4	2	44	1.37
52045--52388	40	8.9	38	81	11	328	48	4	2	44	1.37
52299--52323	11	2.3	11	100	0	50	44	8	8	40	1.63
60797--61999	182	6.6	182	94	1	2056	27	16	13	42	1.86
60797--61999	543	2.2	546	94	0	2117	27	16	13	42	1.86
61982--62010	15	1.9	15	100	0	58	13	27	0	58	1.36
62942--62996	15	3.5	15	73	22	58	3	43	0	52	1.18
62926--63013	33	2.7	33	94	3	151	3	45	0	51	1.18
63201--63266	33	2.0	33	93	0	114	22	46	0	30	1.52
63303--63343	21	2.0	21	90	0	64	19	26	12	41	1.87
65567--66039	181	2.6	182	89	1	700	26	16	13	42	1.85
67596--67727	31	4.4	30	63	21	78	39	9	4	46	1.56
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
67561--67743	90	2.0	90	100	0	366	38	9	5	45	1.60
67918--67965	21	2.3	21	85	7	62	47	0	4	47	1.21
74443--75029	55	10.8	55	84	4	742	28	22	18	31	1.97
75033--75224	37	5.2	36	87	1	258	22	20	18	38	1.93
75042--75216	73	2.4	74	84	2	221	24	21	17	37	1.94
77083--77111	2	15.0	2	92	7	51	51	0	0	48	1.00
77003--77215	113	1.9	111	87	3	311	33	16	14	34	1.90
87170--87273	19	5.9	19	69	26	86	16	28	33	21	1.95
87198--87254	15	3.5	15	70	25	53	19	33	28	19	1.96
87176--87273	34	2.9	34	100	0	196	17	30	30	21	1.96
88224--88410	31	6.0	31	92	1	286	20	18	22	38	1.93
88891--88933	21	2.0	21	82	8	52	32	4	13	48	1.63
91448--91508	19	3.4	18	70	25	58	16	31	29	22	1.96
91440--91508	34	2.0	35	94	2	122	18	28	30	21	1.97
92460--92646	31	6.0	31	90	1	286	20	17	21	39	1.92
93125--93167	21	2.0	21	82	8	52	32	4	13	48	1.63
99914--99958	21	2.1	21	87	0	63	15	24	28	31	1.96
107060--107118	31	1.9	31	89	6	93	37	3	15	44	1.63
109427--109451	12	2.1	12	100	0	50	44	8	16	32	1.76
109523--109548	7	3.7	7	100	0	52	11	0	61	26	1.30
111918--112021	46	2.3	46	94	0	181	51	16	11	20	1.74
124186--124217	15	2.0	17	88	11	50	15	6	43	34	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
124603--124664	2	31.0	2	100	0	124	50	0	0	50	1.00
129317--129368	25	2.1	25	92	0	86	36	21	30	11	1.89
132898--132941	22	2.0	22	81	0	52	18	59	20	2	1.49
133322--133357	18	2.0	18	88	0	54	19	11	33	36	1.87
133749--134048	37	8.7	35	72	17	218	45	8	2	44	1.46
133749--134051	71	4.4	71	76	15	253	44	8	2	44	1.46
133859--134041	97	1.9	97	86	4	260	46	9	2	41	1.48
133971--134051	35	2.3	35	89	4	119	40	8	2	48	1.47
134994--135036	20	2.0	22	86	8	63	23	11	0	65	1.25
136476--136672	77	2.5	77	86	4	279	40	12	14	32	1.83
136567--136795	125	1.8	123	86	5	327	38	12	15	33	1.85
136809--136933	40	3.2	38	68	8	101	37	8	16	38	1.78
136495--136873	201	1.9	202	86	2	548	37	11	16	34	1.84
136679--137066	77	5.1	76	82	6	385	36	7	17	37	1.80
136679--137101	153	2.8	153	82	8	454	37	8	17	36	1.80
136679--137101	230	1.8	230	84	4	575	37	8	17	36	1.80
137304--138111	260	3.1	261	79	5	871	34	15	9	40	1.80
137895--138506	184	3.3	184	91	1	906	34	16	9	40	1.80
138445--138665	76	2.9	76	83	4	284	35	18	10	35	1.85
138437--138682	76	3.2	75	81	5	262	34	18	10	35	1.86
138887--138936	22	2.3	22	75	21	52	22	16	8	54	1.68
140374--140450	25	3.3	25	67	18	76	55	0	6	37	1.26
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
140374--140451	22	3.5	22	70	16	70	56	0	6	37	1.25
140374--140454	23	3.6	23	67	20	62	56	0	6	37	1.24
140990--141023	2	17.5	2	87	6	52	50	0	0	50	1.00
142773--142831	21	2.8	19	76	16	55	44	8	1	45	1.44
142800--142835	13	2.6	14	86	8	56	50	2	0	47	1.15
145863--145948	32	2.7	32	85	0	118	32	13	22	31	1.93

Tables:   1

The End!