Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003337.1 Hibiscus syriacus cultivar Beakdansim tig00007026_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  92738

Tables:   1   

This is table  1  of  1  ( 51 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
266--370
53
2.0
53
94
3
185
30
13
11
44
1.79
9809--9864
24
2.3
24
96
0
103
53
14
7
25
1.66
10375--10465
32
2.8
32
85
5
121
32
16
13
37
1.87
21665--21706
15
2.9
15
92
3
68
50
2
7
40
1.43
23308--23464
64
2.5
62
80
9
165
31
20
24
24
1.98
24570--24605
2
18.0
2
88
11
56
50
2
0
47
1.15
24570--24611
14
3.1
14
86
6
61
47
4
0
47
1.23
25112--25172
23
2.7
23
92
0
104
18
22
27
31
1.97
27487--27520
17
2.0
17
100
0
68
58
5
23
11
1.55
27947--27987
16
2.6
16
96
0
73
2
34
0
63
1.08
28792--28969
90
2.0
90
87
0
257
36
10
8
44
1.68
31290--31358
2
34.0
2
97
2
129
49
1
0
49
1.09
31871--31930
23
2.6
23
86
0
84
18
25
26
30
1.98
43761--43806
18
2.6
18
86
3
67
15
43
0
41
1.46
44407--44440
17
1.9
18
88
5
52
35
0
41
23
1.55
49733--49758
2
13.0
2
100
0
52
50
0
0
50
1.00
49864--49905
20
2.2
19
86
4
57
76
0
2
21
0.90
51384--51436
3
18.0
3
84
3
63
64
0
0
35
0.94
51388--51425
20
1.9
20
88
0
58
68
0
0
31
0.90
53183--53275
32
2.9
32
79
9
118
26
16
19
37
1.92
55054--55105
27
1.9
27
96
0
95
21
13
32
32
1.92
56262--56315
22
2.5
22
96
0
99
44
1
3
50
1.30
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
57440--57476
2
18.5
2
100
0
74
51
0
0
48
1.00
59981--60018
19
2.0
20
89
5
60
36
7
52
2
1.45
62104--62151
23
2.1
23
100
0
96
29
12
16
41
1.85
62878--63036
21
7.6
21
89
6
209
40
22
22
15
1.91
65559--65636
11
6.5
11
77
17
59
70
0
23
6
1.10
65559--65598
17
2.4
17
87
8
55
75
0
25
0
0.81
66888--67148
124
2.1
125
86
2
373
29
17
28
24
1.97
68183--68278
36
2.7
36
88
0
138
34
23
17
23
1.96
68637--69524
51
16.9
51
84
5
1012
30
20
25
23
1.98
68635--69593
106
9.1
103
83
7
1069
30
20
24
24
1.98
68635--69524
157
5.7
157
91
2
1303
30
20
25
23
1.98
71236--71273
19
2.0
20
89
5
60
36
7
52
2
1.45
73308--73337
2
15.0
2
100
0
60
50
0
0
50
1.00
73462--73514
26
2.0
26
92
0
88
37
20
13
28
1.90
73795--73834
20
1.9
21
85
10
55
60
2
0
37
1.11
73817--73849
14
2.2
16
89
10
52
60
9
0
30
1.27
75116--75238
54
2.3
54
84
2
149
28
18
22
30
1.98
75626--75676
21
2.4
21
90
0
75
39
9
21
29
1.85
75809--75858
21
2.4
21
83
6
66
24
14
28
34
1.93
75852--75900
23
2.1
23
88
0
71
26
22
20
30
1.98
82055--82114
22
2.8
21
80
9
68
30
15
25
30
1.95
82101--82220
54
2.2
54
77
2
125
27
21
20
30
1.98
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
82608--82658
21
2.4
21
86
0
66
41
9
19
29
1.84
85569--85607
21
1.9
20
89
5
60
58
0
7
33
1.26
88491--88569
20
4.0
20
77
6
79
27
12
29
30
1.93
88478--88568
40
2.3
40
96
0
164
28
12
28
30
1.92
89545--89589
18
2.5
18
92
0
72
26
17
26
28
1.98
92583--92660
20
3.8
20
73
13
61
30
8
26
33
1.87
92611--92664
20
2.7
20
79
0
63
25
12
25
35
1.92

Tables:   1

The End!