genome.fa.s3338.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003338.1 Hibiscus syriacus cultivar Beakdansim tig00007027_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  74127

Tables:   1   

This is table  1  of  1  ( 30 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
8568--8620	2	27.0	2	96	3	99	49	0	0	50	1.00
8616--8855	115	2.0	119	90	4	380	43	6	17	32	1.74
13324--13373	24	2.0	25	88	7	75	54	2	0	44	1.11
13307--13376	23	3.0	23	78	10	79	52	1	0	45	1.09
14353--14386	3	11.3	3	100	0	68	32	0	0	67	0.91
21358--21447	45	2.0	45	88	0	135	32	23	8	35	1.86
25236--25270	18	1.9	18	88	0	52	54	0	17	28	1.43
30470--30504	18	1.9	18	88	0	52	54	0	17	28	1.43
40525--40554	2	15.0	2	100	0	60	50	0	0	50	1.00
42549--42593	23	2.0	23	86	0	63	26	28	24	20	1.99
43198--43349	67	2.3	66	88	3	214	15	26	26	30	1.96
43329--43371	21	2.0	21	86	0	59	16	25	27	30	1.97
44571--44630	23	2.6	23	91	0	102	25	31	25	18	1.97
45244--45395	67	2.3	66	88	3	214	15	26	26	30	1.96
45375--45417	21	2.0	21	90	0	68	18	25	25	30	1.98
51461--51520	23	2.6	23	97	0	111	23	31	26	18	1.97
52132--52283	67	2.3	66	89	3	223	15	26	27	30	1.96
52263--52305	21	2.0	21	86	0	59	16	25	27	30	1.97
54014--54064	3	17.7	3	88	8	79	64	1	0	33	1.05
54443--54876	121	3.7	122	80	10	515	27	17	14	40	1.88
54637--54843	110	1.9	111	87	5	312	29	17	14	37	1.90
54905--55179	113	2.4	113	89	1	408	26	19	14	38	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56330--56412	21	3.9	21	84	4	96	59	3	7	30	1.42
56330--56412	42	2.0	43	85	7	116	59	3	7	30	1.42
57576--57675	45	2.2	45	94	0	173	26	22	22	30	1.99
60358--60389	9	3.6	9	91	0	55	56	0	21	21	1.43
64166--64197	15	2.1	15	94	0	55	46	9	18	25	1.79
67507--67560	28	2.0	27	88	3	81	59	0	5	35	1.21
69695--69733	3	13.7	3	84	10	55	64	2	0	33	1.08
69695--69744	25	2.0	25	92	7	84	64	4	2	30	1.23

Tables:   1

The End!