Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003339.1 Hibiscus syriacus cultivar Beakdansim tig00007028_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  152129

Tables:   1   

This is table  1  of  1  ( 43 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
10301--10345
21
2.1
21
87
0
63
31
28
24
15
1.96
11113--11268
31
5.0
31
91
1
242
20
20
22
36
1.95
14253--14297
21
2.1
21
87
0
63
31
28
24
15
1.96
15065--15219
31
5.0
31
89
3
233
20
20
22
36
1.96
22539--22577
21
1.9
20
94
5
69
15
38
5
41
1.69
23932--23962
2
15.5
2
100
0
62
48
0
0
51
1.00
34645--34701
26
2.3
26
82
11
66
45
10
19
24
1.81
56511--56546
12
2.9
12
91
4
54
72
0
2
25
0.98
57599--57768
46
3.7
46
96
1
299
44
3
1
50
1.29
57639--57759
23
5.3
23
59
0
62
44
4
1
48
1.34
57925--58098
43
4.0
43
89
3
233
52
2
4
40
1.34
58099--58143
23
1.9
24
81
4
56
46
2
8
42
1.47
63200--63244
3
15.0
3
100
0
90
66
0
33
0
0.92
77614--77653
19
2.0
20
86
13
57
47
0
0
52
1.00
88989--89078
21
4.3
21
88
2
128
44
18
21
15
1.87
89329--89353
13
1.9
13
100
0
50
16
16
16
52
1.76
91654--91720
15
4.6
14
74
22
50
74
0
17
7
1.04
91686--91785
24
4.4
22
72
19
80
74
0
17
9
1.07
91739--91768
16
1.9
16
93
6
53
66
0
20
13
1.24
91683--91775
16
5.6
16
69
20
50
75
0
16
8
1.04
94471--94676
36
5.7
36
87
5
233
37
23
20
18
1.94
94462--94662
108
1.9
108
89
2
314
36
24
18
19
1.94
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
94471--94662
72
2.7
70
85
4
267
36
25
19
18
1.95
95076--95661
51
11.3
51
83
7
673
33
18
24
24
1.97
95076--95652
258
2.2
257
87
5
804
33
18
24
23
1.97
95327--96230
55
16.9
54
84
8
656
30
16
26
26
1.96
95637--96218
108
5.4
108
92
2
943
29
14
27
28
1.95
100364--100479
60
1.9
60
82
0
142
41
11
12
35
1.78
103806--103830
2
12.5
2
100
0
50
52
0
0
48
1.00
104139--104195
24
2.4
24
93
0
105
29
33
19
17
1.95
106047--106071
12
2.1
12
100
0
50
48
24
8
20
1.76
110680--110704
12
2.1
12
100
0
50
40
24
16
20
1.91
112039--112091
23
2.3
23
80
6
63
9
20
15
54
1.68
120876--120919
22
2.0
23
86
4
63
36
20
22
20
1.95
120922--120978
21
2.7
21
94
0
96
49
1
14
35
1.53
120922--120989
21
3.2
20
89
4
82
50
2
11
35
1.54
126774--126805
14
2.4
14
90
10
50
68
0
6
25
1.12
140910--141073
65
2.5
64
85
1
229
27
15
26
30
1.96
141024--141070
19
2.5
19
83
10
62
25
17
31
25
1.97
140914--141093
65
2.8
63
78
10
184
28
16
23
31
1.96
147178--147222
23
2.0
23
86
0
63
24
20
6
48
1.73
149330--149538
65
3.2
63
82
8
235
27
16
24
31
1.97
149442--149488
19
2.5
19
83
10
62
25
17
31
25
1.97

Tables:   1

The End!