Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003340.1 Hibiscus syriacus cultivar Beakdansim tig00007029_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  63460

Tables:   1   

This is table  1  of  1  ( 30 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1450--1486
19
1.9
19
94
0
65
24
10
29
35
1.89
2417--2497
39
2.2
37
89
8
128
27
11
11
50
1.71
4052--4094
18
2.4
18
100
0
86
44
6
20
27
1.77
4683--4720
20
2.0
20
94
5
69
26
10
7
55
1.61
4685--4730
19
2.3
20
85
3
58
30
15
4
50
1.63
6124--6196
19
3.8
19
96
0
110
26
20
21
31
1.98
11323--11369
9
5.2
9
78
0
58
38
2
34
25
1.68
11301--11381
18
4.5
18
85
3
101
34
8
35
20
1.84
19268--19313
2
23.0
2
100
0
92
50
0
0
50
1.00
22148--22172
6
4.2
6
100
0
50
32
32
20
16
1.94
23185--23229
16
2.6
17
86
6
65
35
6
26
31
1.82
26623--26703
40
2.0
40
100
0
162
19
9
14
55
1.67
26633--26719
40
2.2
39
87
8
122
19
10
14
55
1.68
27274--27371
46
2.2
46
78
8
107
34
10
22
32
1.88
36935--36963
12
2.4
12
100
0
58
65
0
20
13
1.26
36959--37015
22
2.7
21
75
8
62
80
0
12
7
0.89
38170--38728
111
5.0
111
93
1
888
30
22
17
29
1.96
38166--38728
220
2.5
222
92
0
923
30
23
17
29
1.97
42231--42382
33
4.6
33
78
12
143
44
36
8
11
1.71
42267--42389
38
3.3
38
82
16
161
43
37
8
11
1.71
42233--42389
71
2.3
69
82
10
180
42
36
8
11
1.72
42382--42468
29
3.1
27
72
16
79
41
25
5
27
1.78
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
43635--43710
14
5.8
13
69
25
54
47
0
1
51
1.09
45383--45651
138
1.9
138
82
4
328
43
14
13
27
1.83
46209--46233
3
8.3
3
100
0
50
36
0
0
64
0.94
59297--59403
32
3.2
32
70
21
94
52
3
4
39
1.40
62465--62562
28
3.4
28
78
12
90
40
7
8
43
1.62
62465--62544
28
2.8
28
82
5
97
40
5
7
47
1.54
63015--63275
20
12.8
20
69
16
151
40
20
21
16
1.91
63017--63275
82
3.2
83
92
3
445
40
20
21
16
1.91

Tables:   1

The End!