genome.fa.s3342.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003342.1 Hibiscus syriacus cultivar Beakdansim tig00007033_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  62653

Tables:   1   

This is table  1  of  1  ( 40 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5108--5142	17	2.0	17	88	5	52	0	31	0	68	0.90
5107--5136	14	2.1	15	93	6	53	0	26	0	73	0.84
5806--5836	14	2.2	14	94	0	53	25	0	0	74	0.82
5856--5895	14	2.7	14	84	7	53	32	2	0	65	1.06
5818--5888	23	2.9	24	77	10	63	26	5	0	67	1.12
6019--6079	18	3.5	18	78	8	56	21	3	0	75	0.94
6297--6359	25	2.4	26	79	10	67	14	6	6	73	1.24
6288--6357	22	3.0	22	70	23	54	15	4	5	74	1.17
9351--9398	12	3.8	13	83	10	64	75	4	18	2	1.07
9350--9399	26	2.0	26	92	7	86	74	4	18	4	1.14
9350--9410	24	2.4	25	81	5	70	73	3	18	4	1.14
11123--11208	37	2.4	36	90	2	127	23	19	15	41	1.89
11047--11281	102	2.3	102	90	0	380	31	18	12	37	1.88
11159--11545	65	5.8	64	73	11	251	29	19	11	39	1.86
11057--11374	167	1.9	168	82	3	399	29	18	12	39	1.87
11225--11414	36	5.4	36	73	13	164	26	18	13	41	1.88
11376--11544	67	2.5	68	86	4	220	30	21	9	38	1.85
12218--12694	106	4.6	106	82	3	545	36	24	18	21	1.95
14664--14732	23	3.0	23	85	4	95	27	26	26	20	1.99
14748--15063	103	3.1	103	96	0	569	36	23	13	26	1.92
16747--16792	21	2.2	21	84	0	56	13	26	30	30	1.93
17593--17657	31	2.1	31	85	0	85	24	15	23	36	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17616--17715	30	3.3	30	88	1	119	24	18	24	34	1.96
19286--19341	9	6.2	9	78	14	53	14	17	0	67	1.22
28209--28249	8	5.2	8	82	5	57	34	0	29	36	1.58
28320--28942	128	4.9	128	96	0	1119	23	25	18	32	1.97
29345--29444	33	3.0	34	77	2	112	39	2	3	56	1.26
29964--30057	21	4.5	21	92	5	145	20	27	34	18	1.95
30061--30108	21	2.3	21	85	0	60	22	12	39	25	1.89
31838--31922	32	2.6	32	81	5	98	60	2	0	37	1.10
31833--31913	35	2.4	34	81	8	103	61	1	0	37	1.04
31866--31945	34	2.3	34	81	12	92	65	5	0	30	1.14
35212--35248	19	2.0	19	89	5	58	8	5	24	62	1.44
37187--37265	3	26.7	3	89	2	124	32	1	0	65	1.00
50021--50098	5	15.6	5	74	19	65	80	0	16	2	0.82
50016--50074	7	8.0	7	77	17	57	83	0	15	1	0.74
50016--50098	20	4.3	19	83	10	98	80	0	16	2	0.81
51230--51381	50	3.0	50	98	0	286	23	13	24	38	1.91
52096--52628	118	4.5	118	96	1	919	35	15	20	28	1.93
52783--52861	3	26.7	3	89	2	124	32	1	0	65	1.00

Tables:   1

The End!