Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01003343.1 Hibiscus syriacus cultivar Beakdansim tig00007041_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 125849
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Found at i:1210 original size:3 final size:3
Alignment explanation
Indices: 1202--1234 Score: 66
Period size: 3 Copynumber: 11.0 Consensus size: 3
1192 AACAAAAAAG
1202 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
1235 CGCCTTAAAA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 30 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
ATT
Found at i:1964 original size:38 final size:40
Alignment explanation
Indices: 1884--1965 Score: 98
Period size: 40 Copynumber: 2.1 Consensus size: 40
1874 TACAAGTTGA
* *
1884 AAAATATATATATATTTTCTTTAAAAAAATTTAAATTCAT
1 AAAATATATATATATTTTCTTTAAAAAAATTAAAAATCAT
* *
1924 AAAATTTATATATATATTT-TTT-ACAAAATTAAAAAT-AT
1 AAAATATATATATAT-TTTCTTTAAAAAAATTAAAAATCAT
1962 AAAA
1 AAAA
1966 AAGGTTTAAT
Statistics
Matches: 37, Mismatches: 4, Indels: 4
0.82 0.09 0.09
Matches are distributed among these distances:
38 6 0.16
39 11 0.30
40 17 0.46
41 3 0.08
ACGTcount: A:0.54, C:0.04, G:0.00, T:0.43
Consensus pattern (40 bp):
AAAATATATATATATTTTCTTTAAAAAAATTAAAAATCAT
Found at i:2552 original size:2 final size:2
Alignment explanation
Indices: 2545--2609 Score: 55
Period size: 2 Copynumber: 33.5 Consensus size: 2
2535 AAATCAAAAT
* * * *
2545 TA TA TA TA TA TA TA TA TA TA TA TA TA -A GA AA TCA -A AA AA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T-A TA TA TA TA
*
2586 TA TA TA TA TA TA TA AA TA T- TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA T
2610 TTGTCCTACA
Statistics
Matches: 54, Mismatches: 5, Indels: 8
0.81 0.07 0.12
Matches are distributed among these distances:
1 3 0.06
2 50 0.93
3 1 0.02
ACGTcount: A:0.55, C:0.02, G:0.02, T:0.42
Consensus pattern (2 bp):
TA
Found at i:4722 original size:4 final size:4
Alignment explanation
Indices: 4713--4751 Score: 51
Period size: 4 Copynumber: 9.8 Consensus size: 4
4703 CAAGGTTAGT
* * *
4713 ATAC ATAC ATAC ATAC ACAC ATAT GTAC ATAC ATAC ATA
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATA
4752 TATATAATTG
Statistics
Matches: 29, Mismatches: 6, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
4 29 1.00
ACGTcount: A:0.49, C:0.23, G:0.03, T:0.26
Consensus pattern (4 bp):
ATAC
Found at i:7546 original size:76 final size:76
Alignment explanation
Indices: 7444--7654 Score: 352
Period size: 76 Copynumber: 2.8 Consensus size: 76
7434 ATTTTAAATA
*
7444 TTATATTTTATCTTTGTTTTATGTATTTTAGTTTAAATAGATTTTAGTATTTTAATTAAGTTTTA
1 TTATATTTTATCTTTGTTTTAGGTATTTTAGTTTAAATAG-TTTTAGTATTTTAATTAAGTTTTA
7509 GGATATTA-TTT
65 GGATATTATTTT
*
7520 TTATATTTTATCTTTATTTTAGGTATTTTAGTTTAAATAGGTTTTAGTATTTTAATTAAGTTTTA
1 TTATATTTTATCTTTGTTTTAGGTATTTTAGTTTAAATA-GTTTTAGTATTTTAATTAAGTTTTA
7585 GGATATTATTTT
65 GGATATTATTTT
* *
7597 TTATATTTTATCTTTGTTTTAGATATTTTAGTTTAAATAGTTTTAAGTGTTTTAATTA
1 TTATATTTTATCTTTGTTTTAGGTATTTTAGTTTAAATAGTTTT-AGTATTTTAATTA
7655 GGATTTAAGA
Statistics
Matches: 127, Mismatches: 5, Indels: 5
0.93 0.04 0.04
Matches are distributed among these distances:
76 74 0.58
77 53 0.42
ACGTcount: A:0.27, C:0.01, G:0.11, T:0.60
Consensus pattern (76 bp):
TTATATTTTATCTTTGTTTTAGGTATTTTAGTTTAAATAGTTTTAGTATTTTAATTAAGTTTTAG
GATATTATTTT
Found at i:8260 original size:17 final size:17
Alignment explanation
Indices: 8235--8268 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
8225 TTTTATCTCA
*
8235 ATTTATTTATTTTATTT
1 ATTTATTTATTTAATTT
*
8252 ATTTGTTTATTTAATTT
1 ATTTATTTATTTAATTT
8269 TTATCTCATT
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.24, C:0.00, G:0.03, T:0.74
Consensus pattern (17 bp):
ATTTATTTATTTAATTT
Found at i:8904 original size:5 final size:5
Alignment explanation
Indices: 8896--9011 Score: 90
Period size: 5 Copynumber: 22.8 Consensus size: 5
8886 TCATTCTATT
* * **
8896 TTTTA TTTTA TTTCA TTTTA TTTTCG TTTTA TTTCG TTTTA TTTTA TTTTA
1 TTTTA TTTTA TTTTA TTTTA TTTT-A TTTTA TTTTA TTTTA TTTTA TTTTA
**** * * * *
8947 TTTTTA GCAAA CTTTA TTTTCA TTCTA -TTTA TTTTA TTTTA TTTTA ATTAA
1 -TTTTA TTTTA TTTTA TTTT-A TTTTA TTTTA TTTTA TTTTA TTTTA TTTTA
8998 TTTTA TTTTA TTTT
1 TTTTA TTTTA TTTT
9012 TCTCTGAATA
Statistics
Matches: 84, Mismatches: 23, Indels: 8
0.73 0.20 0.07
Matches are distributed among these distances:
4 3 0.04
5 68 0.81
6 13 0.15
ACGTcount: A:0.21, C:0.06, G:0.03, T:0.71
Consensus pattern (5 bp):
TTTTA
Found at i:8951 original size:26 final size:26
Alignment explanation
Indices: 8895--8952 Score: 71
Period size: 26 Copynumber: 2.2 Consensus size: 26
8885 TTCATTCTAT
* *
8895 TTTTTATTTTATTTCATTTTATTTTC
1 TTTTTATTTCATTTCATTTTATTTTA
* * *
8921 GTTTTATTTCGTTTTATTTTATTTTA
1 TTTTTATTTCATTTCATTTTATTTTA
8947 TTTTTA
1 TTTTTA
8953 GCAAACTTTA
Statistics
Matches: 26, Mismatches: 6, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.16, C:0.05, G:0.03, T:0.76
Consensus pattern (26 bp):
TTTTTATTTCATTTCATTTTATTTTA
Found at i:12847 original size:20 final size:20
Alignment explanation
Indices: 12819--12884 Score: 60
Period size: 20 Copynumber: 3.2 Consensus size: 20
12809 ATCCTGCCTA
*
12819 AAGGTCTTATAGATGGCCCG
1 AAGGACTTATAGATGGCCCG
** * *
12839 AAGGACTTATCATCTTGCTCG
1 AAGGACTTAT-AGATGGCCCG
* *
12860 AAAGACTTATAGATGACCCG
1 AAGGACTTATAGATGGCCCG
12880 AAGGA
1 AAGGA
12885 TTTAAGCATC
Statistics
Matches: 33, Mismatches: 12, Indels: 2
0.70 0.26 0.04
Matches are distributed among these distances:
20 18 0.55
21 15 0.45
ACGTcount: A:0.32, C:0.20, G:0.24, T:0.24
Consensus pattern (20 bp):
AAGGACTTATAGATGGCCCG
Found at i:12937 original size:42 final size:41
Alignment explanation
Indices: 12824--12937 Score: 149
Period size: 42 Copynumber: 2.7 Consensus size: 41
12814 GCCTAAAGGT
*
12824 CTTATAGATGGCCCGAAGGACTTATCATCTTGCTCGAAAGA
1 CTTATAGATGGCCCGAAGGACTTATCATCATGCTCGAAAGA
* * *
12865 CTTATAGATGACCCGAAGGATTTAAGCATCATGCTCGAAAGA
1 CTTATAGATGGCCCGAAGGACTT-ATCATCATGCTCGAAAGA
*
12907 CTTACT-GATGGCCCAAAGGACTTACTCATCA
1 CTTA-TAGATGGCCCGAAGGACTTA-TCATCA
12938 AGAAAACCTT
Statistics
Matches: 62, Mismatches: 8, Indels: 5
0.83 0.11 0.07
Matches are distributed among these distances:
41 22 0.35
42 39 0.63
43 1 0.02
ACGTcount: A:0.32, C:0.23, G:0.20, T:0.25
Consensus pattern (41 bp):
CTTATAGATGGCCCGAAGGACTTATCATCATGCTCGAAAGA
Found at i:13213 original size:42 final size:41
Alignment explanation
Indices: 13107--13214 Score: 117
Period size: 42 Copynumber: 2.6 Consensus size: 41
13097 AGGTCTTACG
* * *
13107 GATGGCCCGAAGGACTTATCATCTTTCTCGAAAAACTTATA
1 GATGACCCGAAGGACTTATCATCATGCTCGAAAAACTTATA
** * * *
13148 GATGACCCGAATAATTTAATCATCATGCTCGAAAGACTTATT
1 GATGACCCGAAGGACTT-ATCATCATGCTCGAAAAACTTATA
*
13190 GATGTCCCGAAGGACTTACTCATCA
1 GATGACCCGAAGGACTTA-TCATCA
13215 AGAAACCTTG
Statistics
Matches: 53, Mismatches: 12, Indels: 3
0.78 0.18 0.04
Matches are distributed among these distances:
41 14 0.26
42 39 0.74
ACGTcount: A:0.32, C:0.22, G:0.17, T:0.29
Consensus pattern (41 bp):
GATGACCCGAAGGACTTATCATCATGCTCGAAAAACTTATA
Found at i:13299 original size:277 final size:274
Alignment explanation
Indices: 12804--13640 Score: 1128
Period size: 277 Copynumber: 3.0 Consensus size: 274
12794 GGAGATGTTC
** *
12804 AAAACATCCTGCCTAAAGGTCTTATAGATGGCCCGAAGGACTTATCATCTTGCTCGAAAGACTTA
1 AAAACATCCTGCCCGAAGGTCTTATAGATGGCCCGAAGGACTTATCATCTTGCTCGAAAAACTTA
* *
12869 TAGATGACCCGAAGGATTTAAGCATCATGCTCGAAAGACTTACTGATGGCCCAAAGGACTTACTC
66 TAGATGACCCGAAGGATTTAATCATCATGCTCGAAAGACTTACTGATGGCCCGAAGGACTTACTC
*
12934 ATCAAGAAAACCTTGAAAATCAAGCTTAGTTTCTTAATTGTCATCAAGGAACCCTTAAAAATTTG
131 ATCAAG-AAACCTTGAAAATCAAGCTTAGTTTCTTAATTGTCATCAAGGAACCCTTAAAAATTAG
* * *
12999 GCTTATCTTCCTTTACAAATTCTTTAGAGATAGTCATCGAGAAACCCCTGAAAATTAGGCTTAGT
195 GCTTAGCTTCATTTA-AAATTCTTT-GAGATAGTCATCGAGAAACCCCTGAAAATCAGGCTTAGT
13064 TTCTAAAAACTCATTTG
258 TTCTAAAAACTCATTTG
** *
13081 AAAACATCCTGCCCGAAGGTCTTACGGATGGCCCGAAGGACTTATCATCTTTCTCGAAAAACTTA
1 AAAACATCCTGCCCGAAGGTCTTATAGATGGCCCGAAGGACTTATCATCTTGCTCGAAAAACTTA
** * *
13146 TAGATGACCCGAATAATTTAATCATCATGCTCGAAAGACTTATTGATGTCCCGAAGGACTTACTC
66 TAGATGACCCGAAGGATTTAATCATCATGCTCGAAAGACTTACTGATGGCCCGAAGGACTTACTC
* *
13211 ATCAAGAAACCTTGAAAATCAAGCTTACTTTCTTAATTGTCATCAAGGAACCCTTAAAAAAGTAG
131 ATCAAGAAACCTTGAAAATCAAGCTTAGTTTCTTAATTGTCATCAAGGAACCCTT-AAAAATTAG
* *
13276 GCTTAGCTTCATTTAAGAATTCTTTGGAGATAGTCATCGAGAACCCCCTGAAAATCAGGTTTAGT
195 GCTTAGCTTCATTTAA-AATTCTTT-GAGATAGTCATCGAGAAACCCCTGAAAATCAGGCTTAGT
*
13341 TTCTGAAAACTCATTTG
258 TTCTAAAAACTCATTTG
* * * *
13358 AAAACATCATTCCCGAAGGTCTTATAGATGTCCCGAAAGACTTATCATCTTGCTC-AAAAGACTT
1 AAAACATCCTGCCCGAAGGTCTTATAGATGGCCCGAAGGACTTATCATCTTGCTCGAAAA-ACTT
* * * *
13422 ATAGATGGCCTGAAGGACTT-ATGCATCATGCTCGAAAGACTTACTGAAGGCCCGAAGGACTTAC
65 ATAGATGACCCGAAGGATTTAAT-CATCATGCTCGAAAGACTTACTGATGGCCCGAAGGACTTAC
* * * * *
13486 TCATCAAGAAACCCTTAAAAATCAAGTTTAGTTTATTAGTTG---TCAAGGAACCCCTAAAAATT
129 TCATCAAGAAA-CCTTGAAAATCAAGCTTAGTTTCTTAATTGTCATCAAGGAACCCTTAAAAATT
* * * * * * * **
13548 AGGTTTAGTTTCCTTTTAAAAACTCATTGAAAATCA-TCATCAAGAAACCCCTGAAAATCAAACT
193 AGGCTTAGCTT-CATTT-AAAATTCTTTG-AGAT-AGTCATCGAGAAACCCCTGAAAATCAGGCT
13612 TAGTTTCTAAAAACTCATTTG
254 TAGTTTCTAAAAACTCATTTG
13633 AAAACATC
1 AAAACATC
13641 AAGAAACACC
Statistics
Matches: 495, Mismatches: 56, Indels: 20
0.87 0.10 0.04
Matches are distributed among these distances:
274 16 0.03
275 76 0.15
276 58 0.12
277 320 0.65
278 25 0.05
ACGTcount: A:0.35, C:0.21, G:0.16, T:0.29
Consensus pattern (274 bp):
AAAACATCCTGCCCGAAGGTCTTATAGATGGCCCGAAGGACTTATCATCTTGCTCGAAAAACTTA
TAGATGACCCGAAGGATTTAATCATCATGCTCGAAAGACTTACTGATGGCCCGAAGGACTTACTC
ATCAAGAAACCTTGAAAATCAAGCTTAGTTTCTTAATTGTCATCAAGGAACCCTTAAAAATTAGG
CTTAGCTTCATTTAAAATTCTTTGAGATAGTCATCGAGAAACCCCTGAAAATCAGGCTTAGTTTC
TAAAAACTCATTTG
Found at i:13423 original size:41 final size:41
Alignment explanation
Indices: 13378--13491 Score: 140
Period size: 42 Copynumber: 2.7 Consensus size: 41
13368 TCCCGAAGGT
* * *
13378 CTTATAGATGTCCCGAAAGACTTATCATCTTGCTCAAAAGA
1 CTTATAGATGGCCCGAAGGACTTATCATCATGCTCAAAAGA
* *
13419 CTTATAGATGGCCTGAAGGACTTATGCATCATGCTCGAAAGA
1 CTTATAGATGGCCCGAAGGACTTAT-CATCATGCTCAAAAGA
*
13461 CTTACT-GAAGGCCCGAAGGACTTACTCATCA
1 CTTA-TAGATGGCCCGAAGGACTTA-TCATCA
13492 AGAAACCCTT
Statistics
Matches: 63, Mismatches: 7, Indels: 5
0.84 0.09 0.07
Matches are distributed among these distances:
41 22 0.35
42 39 0.62
43 2 0.03
ACGTcount: A:0.32, C:0.23, G:0.19, T:0.26
Consensus pattern (41 bp):
CTTATAGATGGCCCGAAGGACTTATCATCATGCTCAAAAGA
Found at i:13666 original size:52 final size:54
Alignment explanation
Indices: 13528--13671 Score: 141
Period size: 52 Copynumber: 2.6 Consensus size: 54
13518 TTATTAGTTG
* *
13528 TCAAGGAACCCCTAAAAATTAGGTTTAGTTTCCTTTTAAAAACTCATTGAAAATCATCA
1 TCAAGAAACCCCTAAAAATTAGGCTTAGTTT-C---TAAAAACTCATTGAAAA-CATCA
* * **
13587 TCAAGAAACCCCTGAAAATCAAACTTAGTTTCTAAAAACTCATTTG-AAA-A-CA
1 TCAAGAAACCCCTAAAAATTAGGCTTAGTTTCTAAAAACTCA-TTGAAAACATCA
* *
13639 TCAAGAAACACCTAAAAATTAGGCTTAGCTTCT
1 TCAAGAAACCCCTAAAAATTAGGCTTAGTTTCT
13672 TTGTTTAAAA
Statistics
Matches: 72, Mismatches: 12, Indels: 9
0.77 0.13 0.10
Matches are distributed among these distances:
52 29 0.40
53 1 0.01
55 13 0.18
56 3 0.04
58 1 0.01
59 25 0.35
ACGTcount: A:0.42, C:0.20, G:0.10, T:0.28
Consensus pattern (54 bp):
TCAAGAAACCCCTAAAAATTAGGCTTAGTTTCTAAAAACTCATTGAAAACATCA
Found at i:21398 original size:16 final size:16
Alignment explanation
Indices: 21377--21408 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
21367 AACCAGATGA
21377 TTTTAATAAAACATTT
1 TTTTAATAAAACATTT
*
21393 TTTTAATAAAATATTT
1 TTTTAATAAAACATTT
21409 AGTTTTAAGG
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.44, C:0.03, G:0.00, T:0.53
Consensus pattern (16 bp):
TTTTAATAAAACATTT
Found at i:23042 original size:29 final size:29
Alignment explanation
Indices: 23009--23077 Score: 129
Period size: 29 Copynumber: 2.4 Consensus size: 29
22999 ACATACATAT
23009 CAAAAAGGGAATATATACATTAGCACCTA
1 CAAAAAGGGAATATATACATTAGCACCTA
*
23038 TAAAAAGGGAATATATACATTAGCACCTA
1 CAAAAAGGGAATATATACATTAGCACCTA
23067 CAAAAAGGGAA
1 CAAAAAGGGAA
23078 AATAACTAAA
Statistics
Matches: 38, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
29 38 1.00
ACGTcount: A:0.51, C:0.14, G:0.16, T:0.19
Consensus pattern (29 bp):
CAAAAAGGGAATATATACATTAGCACCTA
Found at i:25323 original size:74 final size:76
Alignment explanation
Indices: 25121--25327 Score: 350
Period size: 74 Copynumber: 2.8 Consensus size: 76
25111 ATTTTAAATA
*
25121 TTATATTTTATCTTTGTTTTAGGTA-TTTAATTTAAATAGGTTTTAGTATTTTAATTAAGTTTTA
1 TTATATTTTATCTTTGTTTTAGGTATTTTAGTTTAAATAGGTTTTAGTATTTTAATTAAGTTTTA
25185 GGATATTATTT
66 GGATATTATTT
*
25196 TTATATTTTATCTTTGTTTTATGTATTTTAGTTTAAATAGGTTTTAGTATTTTAATTAAGTTTTA
1 TTATATTTTATCTTTGTTTTAGGTATTTTAGTTTAAATAGGTTTTAGTATTTTAATTAAGTTTTA
25261 GGATATTA-TT
66 GGATATTATTT
*
25271 TT-TATTTTATCTTTGTTTTAGGTATTTTAGTTTAAATA-GTTTTAAGTGTTTTAATTA
1 TTATATTTTATCTTTGTTTTAGGTATTTTAGTTTAAATAGGTTTT-AGTATTTTAATTA
25328 GGATTTAAGA
Statistics
Matches: 126, Mismatches: 4, Indels: 5
0.93 0.03 0.04
Matches are distributed among these distances:
73 5 0.04
74 47 0.37
75 28 0.22
76 46 0.37
ACGTcount: A:0.27, C:0.01, G:0.12, T:0.60
Consensus pattern (76 bp):
TTATATTTTATCTTTGTTTTAGGTATTTTAGTTTAAATAGGTTTTAGTATTTTAATTAAGTTTTA
GGATATTATTT
Found at i:28986 original size:74 final size:74
Alignment explanation
Indices: 28858--28996 Score: 172
Period size: 74 Copynumber: 1.9 Consensus size: 74
28848 CACGATTATT
* * * * * * *
28858 TTCAAAATACTGTTTGGATTCTTGGAAATTTGGAAAATAAATTGTCTACAAACTTTTAAAAGCTT
1 TTCAAAATACTCTTCGGATTCTCGGAAATTTGGAAAAGAAACTATCAACAAACTTTTAAAAGCTT
28923 TCACGAAAA
66 TCACGAAAA
* * *
28932 TTCAAAATACTCTTCGGATTGTCGGAGATTTGGAAAAGAAACTATCAATC-AACTTTTGAAAGCT
1 TTCAAAATACTCTTCGGATTCTCGGAAATTTGGAAAAGAAACTATCAA-CAAACTTTTAAAAGCT
28996 T
65 T
28997 CGACTGATTC
Statistics
Matches: 54, Mismatches: 10, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
74 53 0.98
75 1 0.02
ACGTcount: A:0.37, C:0.14, G:0.15, T:0.34
Consensus pattern (74 bp):
TTCAAAATACTCTTCGGATTCTCGGAAATTTGGAAAAGAAACTATCAACAAACTTTTAAAAGCTT
TCACGAAAA
Found at i:40703 original size:58 final size:60
Alignment explanation
Indices: 40626--40787 Score: 188
Period size: 58 Copynumber: 2.8 Consensus size: 60
40616 ACCCATATTT
* * *
40626 TAAATT-GGTCCTTTAACTTTTGAATATTCTAATTTCATACCCAAGCTATGA-CTCATTC
1 TAAATTAGTTCCTTAAACTTTTGAATATTCTAATTTCATACCCAACCTATGACCTCATTC
* * * *
40684 TAAATTA-TTCCTTAAACTTTTTAACATTCTAATTTCATCCCCAACCTATGACCCTCATTT
1 TAAATTAGTTCCTTAAACTTTTGAATATTCTAATTTCATACCCAACCTATGA-CCTCATTC
* * * *
40744 TAAATTAGTTCC-CAAACTTTTGAATCTTTTAATTTCATTCCCAA
1 TAAATTAGTTCCTTAAACTTTTGAATATTCTAATTTCATACCCAA
40788 ATTCGTCCAA
Statistics
Matches: 87, Mismatches: 13, Indels: 6
0.82 0.12 0.06
Matches are distributed among these distances:
58 44 0.51
60 39 0.45
61 4 0.05
ACGTcount: A:0.30, C:0.23, G:0.05, T:0.42
Consensus pattern (60 bp):
TAAATTAGTTCCTTAAACTTTTGAATATTCTAATTTCATACCCAACCTATGACCTCATTC
Found at i:40777 original size:60 final size:58
Alignment explanation
Indices: 40640--40787 Score: 174
Period size: 60 Copynumber: 2.5 Consensus size: 58
40630 TTGGTCCTTT
* * *
40640 AACTTTTGAATATTCTAATTTCATACCCAAGCTATGACTCATTCTAAATTATTCCTTA
1 AACTTTTGAATCTTCTAATTTCATACCCAACCTATGACTCATTCTAAATTATTCCTCA
* * *
40698 AACTTTTTAA-CATTCTAATTTCATCCCCAACCTATGACCCTCATTTTAAATTAGTTCC-CA
1 AACTTTTGAATC-TTCTAATTTCATACCCAACCTATGA--CTCATTCTAAATTA-TTCCTCA
* *
40758 AACTTTTGAATCTTTTAATTTCATTCCCAA
1 AACTTTTGAATCTTCTAATTTCATACCCAA
40788 ATTCGTCCAA
Statistics
Matches: 76, Mismatches: 9, Indels: 8
0.82 0.10 0.09
Matches are distributed among these distances:
58 32 0.42
60 39 0.51
61 5 0.07
ACGTcount: A:0.31, C:0.24, G:0.04, T:0.41
Consensus pattern (58 bp):
AACTTTTGAATCTTCTAATTTCATACCCAACCTATGACTCATTCTAAATTATTCCTCA
Found at i:44160 original size:34 final size:34
Alignment explanation
Indices: 44112--44184 Score: 137
Period size: 34 Copynumber: 2.1 Consensus size: 34
44102 ATGCAGATTG
44112 GGGTAGCAGCGTGGATGACAGAAGGTCCATATCA
1 GGGTAGCAGCGTGGATGACAGAAGGTCCATATCA
*
44146 GGGTAGCAGTGTGGATGACAGAAGGTCCATATCA
1 GGGTAGCAGCGTGGATGACAGAAGGTCCATATCA
44180 GGGTA
1 GGGTA
44185 TCGTGAAAAG
Statistics
Matches: 38, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
34 38 1.00
ACGTcount: A:0.29, C:0.15, G:0.37, T:0.19
Consensus pattern (34 bp):
GGGTAGCAGCGTGGATGACAGAAGGTCCATATCA
Found at i:50032 original size:17 final size:17
Alignment explanation
Indices: 50012--50067 Score: 53
Period size: 17 Copynumber: 3.3 Consensus size: 17
50002 TGATATTATT
*
50012 TATTTTTATTTTTGATA
1 TATTTATATTTTTGATA
50029 TATTTAT-TTTTTGAGTA
1 TATTTATATTTTTGA-TA
**
50046 T-TTTAATATTTTAAATA
1 TATTT-ATATTTTTGATA
50063 TATTT
1 TATTT
50068 TTTAATTTGT
Statistics
Matches: 32, Mismatches: 3, Indels: 7
0.76 0.07 0.17
Matches are distributed among these distances:
16 10 0.31
17 14 0.44
18 8 0.25
ACGTcount: A:0.29, C:0.00, G:0.05, T:0.66
Consensus pattern (17 bp):
TATTTATATTTTTGATA
Found at i:50032 original size:21 final size:23
Alignment explanation
Indices: 49989--50039 Score: 79
Period size: 21 Copynumber: 2.3 Consensus size: 23
49979 TAATCAATGA
49989 TATTTTTAAATTTTGATATTATT
1 TATTTTTAAATTTTGATATTATT
*
50012 TATTTTT-ATTTTTGATA-TATT
1 TATTTTTAAATTTTGATATTATT
50033 TATTTTT
1 TATTTTT
50040 TGAGTATTTT
Statistics
Matches: 27, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
21 11 0.41
22 9 0.33
23 7 0.26
ACGTcount: A:0.25, C:0.00, G:0.04, T:0.71
Consensus pattern (23 bp):
TATTTTTAAATTTTGATATTATT
Found at i:50040 original size:22 final size:23
Alignment explanation
Indices: 49989--50040 Score: 72
Period size: 22 Copynumber: 2.3 Consensus size: 23
49979 TAATCAATGA
*
49989 TATTTTTAAATTTTGATATTATT
1 TATTTTTTAATTTTGATATTATT
*
50012 TA-TTTTTATTTTTGATA-TATT
1 TATTTTTTAATTTTGATATTATT
50033 TATTTTTT
1 TATTTTTT
50041 GAGTATTTTA
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
21 6 0.23
22 18 0.69
23 2 0.08
ACGTcount: A:0.25, C:0.00, G:0.04, T:0.71
Consensus pattern (23 bp):
TATTTTTTAATTTTGATATTATT
Found at i:52502 original size:81 final size:80
Alignment explanation
Indices: 52411--52710 Score: 313
Period size: 81 Copynumber: 3.7 Consensus size: 80
52401 AGGCATCTAG
* * * * *
52411 AGATGATACTGATTTATGTCCTCTGCGAAAATGGAGGGTTCAGAATGAAACACCATCACCTGAAC
1 AGATGATACTGATTTATCTCCTCTGCG-AAACGGAGGGTTCGGAATGATACACCATCACCAGAAC
*
52476 CTTTAGTAAACAGTGC
65 CTTTAGTAAACAGAGC
* ** *
52492 AGATGGTACTGATTTATCTCCTCCACGGAAACGGAGGGTTCGGAATGATACACAATCACCAGAAC
1 AGATGATACTGATTTATCTCCTCTGC-GAAACGGAGGGTTCGGAATGATACACCATCACCAGAAC
52557 CTTTAGTAAACAGAGC
65 CTTTAGTAAACAGAGC
* * * * * *
52573 AGATGTTAATGATTTATCTCCTCCATG-GAAACGGAGGGCTCGGAATGGTACACCTTCACCAAAA
1 AGATGATACTGATTTATCTCCT-C-TGCGAAACGGAGGGTTCGGAATGATACACCATCACCAGAA
52637 CCTTTAGTAAACAGAGC
64 CCTTTAGTAAACAGAGC
* * ** * *
52654 AGATG---CTGATTTATCACCACCT-CGGAAACGGAGGGTGAGAAATGATACACCTTCACC
1 AGATGATACTGATTTATCTCC-TCTGC-GAAACGGAGGGTTCGGAATGATACACCATCACC
52711 GAAACGGAGG
Statistics
Matches: 186, Mismatches: 27, Indels: 15
0.82 0.12 0.07
Matches are distributed among these distances:
77 1 0.01
78 40 0.22
81 143 0.77
82 2 0.01
ACGTcount: A:0.33, C:0.22, G:0.22, T:0.24
Consensus pattern (80 bp):
AGATGATACTGATTTATCTCCTCTGCGAAACGGAGGGTTCGGAATGATACACCATCACCAGAACC
TTTAGTAAACAGAGC
Found at i:54686 original size:23 final size:23
Alignment explanation
Indices: 54650--54710 Score: 79
Period size: 23 Copynumber: 2.7 Consensus size: 23
54640 CTGAATGATT
* *
54650 CAGTGCTGACTGATTCAACAAAA
1 CAGTGATGAATGATTCAACAAAA
54673 CAGTGATGAATGATTCAACAAAA
1 CAGTGATGAATGATTCAACAAAA
*
54696 CA-TTACTGAATGATT
1 CAGTGA-TGAATGATT
54711 TAGCACAGAA
Statistics
Matches: 34, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
22 2 0.06
23 32 0.94
ACGTcount: A:0.41, C:0.16, G:0.16, T:0.26
Consensus pattern (23 bp):
CAGTGATGAATGATTCAACAAAA
Found at i:54813 original size:16 final size:16
Alignment explanation
Indices: 54792--54868 Score: 127
Period size: 16 Copynumber: 4.8 Consensus size: 16
54782 ACAGAGTCTC
54792 TGAATCATTCAACATT
1 TGAATCATTCAACATT
*
54808 TGAATCATTCAGCATT
1 TGAATCATTCAACATT
54824 TGAATCATTCAACATT
1 TGAATCATTCAACATT
* *
54840 TGAATTATTCAGCATT
1 TGAATCATTCAACATT
54856 TGAATCATTCAAC
1 TGAATCATTCAAC
54869 GCTTAATCAT
Statistics
Matches: 55, Mismatches: 6, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
16 55 1.00
ACGTcount: A:0.35, C:0.18, G:0.09, T:0.38
Consensus pattern (16 bp):
TGAATCATTCAACATT
Found at i:54829 original size:32 final size:32
Alignment explanation
Indices: 54792--54868 Score: 145
Period size: 32 Copynumber: 2.4 Consensus size: 32
54782 ACAGAGTCTC
54792 TGAATCATTCAACATTTGAATCATTCAGCATT
1 TGAATCATTCAACATTTGAATCATTCAGCATT
*
54824 TGAATCATTCAACATTTGAATTATTCAGCATT
1 TGAATCATTCAACATTTGAATCATTCAGCATT
54856 TGAATCATTCAAC
1 TGAATCATTCAAC
54869 GCTTAATCAT
Statistics
Matches: 44, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
32 44 1.00
ACGTcount: A:0.35, C:0.18, G:0.09, T:0.38
Consensus pattern (32 bp):
TGAATCATTCAACATTTGAATCATTCAGCATT
Found at i:55585 original size:2 final size:2
Alignment explanation
Indices: 55578--55606 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
55568 AAATGAACTT
55578 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
55607 TTAGGTCAGG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:57560 original size:23 final size:23
Alignment explanation
Indices: 57515--57561 Score: 60
Period size: 23 Copynumber: 2.0 Consensus size: 23
57505 CTGAGTCTAG
* *
57515 ATTAATGAAGGTGTTGCGTCCTT
1 ATTAATGAAGGTGTTACGACCTT
57538 ATTAATGAAGGTGTTTAC-ACCTT
1 ATTAATGAAGGTG-TTACGACCTT
57561 A
1 A
57562 ATCTTGACTG
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
23 18 0.86
24 3 0.14
ACGTcount: A:0.28, C:0.13, G:0.21, T:0.38
Consensus pattern (23 bp):
ATTAATGAAGGTGTTACGACCTT
Found at i:59038 original size:22 final size:22
Alignment explanation
Indices: 59010--59072 Score: 78
Period size: 21 Copynumber: 3.0 Consensus size: 22
59000 CTTTAATTCA
59010 AAATTTATATACTCTAAACTTT
1 AAATTTATATACTCTAAACTTT
* *
59032 AAATTTAAAT-CT-TAAACCGTT
1 AAATTTATATACTCTAAA-CTTT
59053 AAATTTATA-ACTCTAAACTT
1 AAATTTATATACTCTAAACTT
59073 CTAACCTTGA
Statistics
Matches: 34, Mismatches: 4, Indels: 7
0.76 0.09 0.16
Matches are distributed among these distances:
20 4 0.12
21 17 0.50
22 13 0.38
ACGTcount: A:0.43, C:0.14, G:0.02, T:0.41
Consensus pattern (22 bp):
AAATTTATATACTCTAAACTTT
Found at i:59802 original size:24 final size:23
Alignment explanation
Indices: 59775--59835 Score: 68
Period size: 23 Copynumber: 2.6 Consensus size: 23
59765 GATAAAGAAT
59775 GTGCCACAAGATCAGAGAAAAAGC
1 GTGCCACAAGATCAGAG-AAAAGC
* * * *
59799 GTGCAACGAGAGCAGAGAAAAGT
1 GTGCCACAAGATCAGAGAAAAGC
*
59822 GTGTCACAAGATCA
1 GTGCCACAAGATCA
59836 TAGATTCTTA
Statistics
Matches: 29, Mismatches: 8, Indels: 1
0.76 0.21 0.03
Matches are distributed among these distances:
23 15 0.52
24 14 0.48
ACGTcount: A:0.43, C:0.18, G:0.28, T:0.11
Consensus pattern (23 bp):
GTGCCACAAGATCAGAGAAAAGC
Found at i:73888 original size:31 final size:30
Alignment explanation
Indices: 73850--73923 Score: 94
Period size: 31 Copynumber: 2.4 Consensus size: 30
73840 GAGGCCACGG
** *
73850 GGCCTACCCAAGAATGATCTCGGGGCCTCAA
1 GGCCTACCCAAGAAAAATCTAGGGGCCTC-A
*
73881 GGCCTACCCAAGAAAAATCTAGGGGCCTCG
1 GGCCTACCCAAGAAAAATCTAGGGGCCTCA
73911 GAGCCTACCCAAG
1 G-GCCTACCCAAG
73924 GTTCGTCTTA
Statistics
Matches: 38, Mismatches: 4, Indels: 2
0.86 0.09 0.05
Matches are distributed among these distances:
30 1 0.03
31 37 0.97
ACGTcount: A:0.28, C:0.32, G:0.26, T:0.14
Consensus pattern (30 bp):
GGCCTACCCAAGAAAAATCTAGGGGCCTCA
Found at i:76310 original size:13 final size:13
Alignment explanation
Indices: 76289--76327 Score: 62
Period size: 13 Copynumber: 3.1 Consensus size: 13
76279 GCAAATTTGG
*
76289 AAAAACGGATCTC
1 AAAATCGGATCTC
76302 AAAATCGGATCTC
1 AAAATCGGATCTC
76315 AAAATCGGA-CTC
1 AAAATCGGATCTC
76327 A
1 A
76328 GAACGTCGAA
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
12 4 0.16
13 21 0.84
ACGTcount: A:0.44, C:0.23, G:0.15, T:0.18
Consensus pattern (13 bp):
AAAATCGGATCTC
Found at i:84253 original size:2 final size:2
Alignment explanation
Indices: 84246--84320 Score: 150
Period size: 2 Copynumber: 37.5 Consensus size: 2
84236 TATTTGTCAA
84246 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
84288 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
84321 AACTTCTCTC
Statistics
Matches: 73, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 73 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:86727 original size:16 final size:17
Alignment explanation
Indices: 86706--86738 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
86696 TTTGATAATT
86706 AAAATTT-TAAAATATA
1 AAAATTTATAAAATATA
*
86722 AAAATTTATAAATTATA
1 AAAATTTATAAAATATA
86739 TTTTTAAAAT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 7 0.47
17 8 0.53
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (17 bp):
AAAATTTATAAAATATA
Found at i:87191 original size:22 final size:22
Alignment explanation
Indices: 87143--87184 Score: 66
Period size: 22 Copynumber: 1.9 Consensus size: 22
87133 ATTCAGTATA
* *
87143 GATTGATTTATTTTAAAATATG
1 GATTAATTTATTTTAAAAAATG
87165 GATTAATTTATTTTAAAAAA
1 GATTAATTTATTTTAAAAAA
87185 ATTATTATTG
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.43, C:0.00, G:0.10, T:0.48
Consensus pattern (22 bp):
GATTAATTTATTTTAAAAAATG
Found at i:87243 original size:31 final size:31
Alignment explanation
Indices: 87206--87264 Score: 109
Period size: 31 Copynumber: 1.9 Consensus size: 31
87196 AGTTGTATGG
*
87206 ATTATTTAAATTTCAGTATTGTAAAACTAAA
1 ATTATTTAAATTTCAGTATTGCAAAACTAAA
87237 ATTATTTAAATTTCAGTATTGCAAAACT
1 ATTATTTAAATTTCAGTATTGCAAAACT
87265 CTTTTAAGTT
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
31 27 1.00
ACGTcount: A:0.42, C:0.08, G:0.07, T:0.42
Consensus pattern (31 bp):
ATTATTTAAATTTCAGTATTGCAAAACTAAA
Found at i:87505 original size:32 final size:32
Alignment explanation
Indices: 87469--87537 Score: 129
Period size: 32 Copynumber: 2.2 Consensus size: 32
87459 TTATACCGTC
*
87469 TTAGTGACGATGTTATAATACGCATGTGTGTA
1 TTAGTGACGATGCTATAATACGCATGTGTGTA
87501 TTAGTGACGATGCTATAATACGCATGTGTGTA
1 TTAGTGACGATGCTATAATACGCATGTGTGTA
87533 TTAGT
1 TTAGT
87538 TAATTGATAA
Statistics
Matches: 36, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 36 1.00
ACGTcount: A:0.28, C:0.10, G:0.25, T:0.38
Consensus pattern (32 bp):
TTAGTGACGATGCTATAATACGCATGTGTGTA
Found at i:88986 original size:2 final size:2
Alignment explanation
Indices: 88979--89019 Score: 82
Period size: 2 Copynumber: 20.5 Consensus size: 2
88969 AAATACATTA
88979 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
89020 ATAAAAAATG
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 39 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:94129 original size:29 final size:29
Alignment explanation
Indices: 94087--94151 Score: 121
Period size: 29 Copynumber: 2.2 Consensus size: 29
94077 TCCTTAAAAT
94087 TTTTGAAAGTTCTAATTTTACATATAAAC
1 TTTTGAAAGTTCTAATTTTACATATAAAC
*
94116 TTTTGAAAGTTCTAATTTTACATCTAAAC
1 TTTTGAAAGTTCTAATTTTACATATAAAC
94145 TTTTGAA
1 TTTTGAA
94152 TGACTAAGGG
Statistics
Matches: 35, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
29 35 1.00
ACGTcount: A:0.35, C:0.11, G:0.08, T:0.46
Consensus pattern (29 bp):
TTTTGAAAGTTCTAATTTTACATATAAAC
Found at i:103316 original size:2 final size:2
Alignment explanation
Indices: 103309--103338 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
103299 TACAGGCAAA
103309 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC
1 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC
103339 ATTGAGTTAT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.00, C:0.50, G:0.00, T:0.50
Consensus pattern (2 bp):
TC
Found at i:103917 original size:22 final size:23
Alignment explanation
Indices: 103878--103923 Score: 67
Period size: 22 Copynumber: 2.0 Consensus size: 23
103868 AACTCTGTGT
*
103878 AACTGCTATATTTAAACAAATGA
1 AACTGCTATAATTAAACAAATGA
*
103901 AACTGCT-TAATTAAACAGATGA
1 AACTGCTATAATTAAACAAATGA
103923 A
1 A
103924 TCTGACTTTC
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
22 14 0.67
23 7 0.33
ACGTcount: A:0.48, C:0.13, G:0.11, T:0.28
Consensus pattern (23 bp):
AACTGCTATAATTAAACAAATGA
Found at i:115202 original size:21 final size:21
Alignment explanation
Indices: 115164--115207 Score: 54
Period size: 21 Copynumber: 2.1 Consensus size: 21
115154 TATAAATTCA
*
115164 AATACTAAAATTTAACTTGAT
1 AATACTAAAATTTAACTTAAT
*
115185 AATA-TAATATTTATACTTAAT
1 AATACTAAAATTTA-ACTTAAT
115206 AA
1 AA
115208 AAAAAATAAA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
20 8 0.40
21 12 0.60
ACGTcount: A:0.50, C:0.07, G:0.02, T:0.41
Consensus pattern (21 bp):
AATACTAAAATTTAACTTAAT
Found at i:122972 original size:12 final size:13
Alignment explanation
Indices: 122950--122978 Score: 51
Period size: 12 Copynumber: 2.3 Consensus size: 13
122940 GACAATGATG
122950 GGGGAAGGAGGAA
1 GGGGAAGGAGGAA
122963 GGGG-AGGAGGAA
1 GGGGAAGGAGGAA
122975 GGGG
1 GGGG
122979 GCAGAATCAT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
12 12 0.75
13 4 0.25
ACGTcount: A:0.31, C:0.00, G:0.69, T:0.00
Consensus pattern (13 bp):
GGGGAAGGAGGAA
Found at i:123439 original size:47 final size:47
Alignment explanation
Indices: 123385--123480 Score: 174
Period size: 47 Copynumber: 2.0 Consensus size: 47
123375 CGAGCGAAAA
*
123385 TGTGACCGCGAATTCAATTTAAAACCCTGGAAATGATATTAAAATTT
1 TGTGACCGCGAATGCAATTTAAAACCCTGGAAATGATATTAAAATTT
*
123432 TGTGACCGCGAATGCAATTTAAAACCCTGGAAATGATATTAAATTTT
1 TGTGACCGCGAATGCAATTTAAAACCCTGGAAATGATATTAAAATTT
123479 TG
1 TG
123481 CTCAAACGTT
Statistics
Matches: 47, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
47 47 1.00
ACGTcount: A:0.36, C:0.15, G:0.17, T:0.32
Consensus pattern (47 bp):
TGTGACCGCGAATGCAATTTAAAACCCTGGAAATGATATTAAAATTT
Done.