genome.fa.s3344.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003344.1 Hibiscus syriacus cultivar Beakdansim tig00007042_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  118094

Tables:   1   

This is table  1  of  1  ( 62 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1582--1620	19	2.1	19	95	0	69	35	2	5	56	1.35
3828--3995	43	3.9	43	78	8	157	25	17	2	53	1.58
3828--3995	86	2.0	86	83	9	218	25	17	2	53	1.58
7434--7598	49	3.4	49	94	0	285	35	27	16	20	1.94
7661--7766	52	2.0	53	83	8	137	43	20	2	33	1.67
9623--9682	28	2.1	28	81	6	66	36	18	5	40	1.72
13694--13719	2	13.0	2	100	0	52	50	0	0	50	1.00
19737--19776	18	2.2	19	86	4	55	72	7	0	20	1.08
30164--30194	16	1.9	16	93	0	53	19	9	16	54	1.68
30748--30795	18	2.7	19	84	12	66	41	27	8	22	1.82
32081--32127	7	6.7	7	87	0	67	17	2	40	40	1.61
37009--37064	28	2.0	28	100	0	112	28	10	21	39	1.87
45390--45443	12	4.4	12	83	4	72	33	1	0	64	1.04
45390--45443	25	2.2	24	93	3	90	33	1	0	64	1.04
46226--46277	20	2.6	20	96	0	95	38	26	13	21	1.90
46333--46526	20	9.6	20	76	8	76	35	25	19	19	1.95
46329--46526	40	5.0	39	81	4	200	35	26	19	19	1.95
46333--46525	60	3.2	60	83	0	251	35	25	19	19	1.95
46907--46977	33	2.2	33	92	0	115	11	22	18	47	1.80
47098--47152	14	3.6	14	73	21	56	41	23	25	9	1.83
47098--47168	33	2.2	33	94	0	124	43	25	22	8	1.81
47164--47261	19	5.7	19	70	22	81	10	24	22	42	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47186--47275	14	5.7	14	74	23	81	8	25	23	42	1.83
47169--47283	33	3.5	33	95	0	212	9	24	20	45	1.81
48981--49267	93	3.1	93	97	1	549	22	12	18	46	1.82
49328--49458	33	3.8	32	87	9	172	46	29	17	6	1.74
49328--49458	52	2.5	51	77	10	167	46	29	17	6	1.74
49311--49458	19	8.3	19	78	15	163	45	29	16	8	1.76
49454--49588	19	7.6	19	75	16	128	11	19	23	45	1.82
49476--49532	14	3.7	14	77	20	60	10	21	22	45	1.82
49459--49551	33	2.8	33	95	0	168	10	20	21	47	1.80
51492--51527	14	2.6	14	95	0	63	33	0	22	44	1.53
51634--51735	19	5.6	19	84	13	151	44	17	23	14	1.86
51764--52036	19	15.4	19	80	15	336	14	20	17	46	1.83
51764--52004	109	2.3	102	80	13	167	14	21	17	46	1.83
51742--52005	52	5.0	52	91	5	420	15	21	17	46	1.84
51742--52036	52	5.6	51	83	10	353	14	20	17	46	1.84
54319--54343	12	2.1	12	100	0	50	0	28	0	72	0.86
54518--54564	24	2.0	24	87	8	69	38	21	14	25	1.92
55247--55615	20	18.5	20	86	5	451	20	18	26	34	1.96
62040--62072	2	16.5	2	93	0	57	51	0	0	48	1.00
63778--64024	83	3.0	83	79	0	269	33	20	14	31	1.93
64859--64892	2	17.0	2	100	0	68	50	0	0	50	1.00
68766--69104	36	9.5	35	69	18	120	42	7	4	46	1.50
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
68772--68849	38	2.2	37	82	13	92	46	5	1	47	1.33
68772--68849	37	2.2	38	75	15	60	46	5	1	47	1.33
68822--68878	29	2.0	29	85	0	78	43	7	5	43	1.54
68842--69105	36	7.2	36	72	16	143	41	6	4	46	1.52
68950--69102	38	4.1	37	75	10	116	41	7	4	46	1.52
69091--69129	2	20.0	2	89	5	62	46	0	2	51	1.14
69740--70675	84	11.3	82	78	6	962	23	20	25	30	1.99
69695--70675	165	5.9	165	92	1	1586	23	21	25	30	1.99
77133--77229	29	3.2	28	77	9	86	43	6	3	47	1.44
77133--77261	63	2.1	61	84	5	161	44	6	3	45	1.47
77191--77455	36	7.2	36	72	16	136	41	6	4	47	1.52
77444--77497	2	27.0	2	100	0	108	50	0	0	50	1.00
81821--81875	23	2.4	23	87	3	76	56	20	14	9	1.65
93508--93584	38	2.0	38	87	0	109	48	6	16	28	1.71
98573--98643	25	3.0	23	80	13	81	50	1	5	42	1.34
98574--98624	26	2.0	25	88	3	75	52	0	5	41	1.25
106389--106480	32	3.0	31	87	3	114	48	14	3	33	1.59
106396--106480	31	2.7	31	89	3	118	48	15	3	32	1.62

Tables:   1

The End!