genome.fa.s3346.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003346.1 Hibiscus syriacus cultivar Beakdansim tig00007045_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  173681

Tables:   1   

This is table  1  of  1  ( 71 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1958--2013	23	2.5	23	76	2	60	66	1	1	30	1.12
5858--5892	2	18.0	2	94	5	63	48	0	0	51	1.00
7544--7578	14	2.4	15	85	9	54	14	14	22	48	1.79
10943--10968	13	2.0	13	100	0	52	30	0	30	38	1.58
11754--11808	21	2.6	21	97	0	101	32	16	29	21	1.95
19835--19894	30	2.0	30	90	0	93	31	5	20	43	1.73
19976--20033	21	2.8	21	91	0	98	20	36	18	24	1.95
20096--20171	21	3.7	21	96	1	136	19	34	18	27	1.95
21362--21409	19	2.5	20	82	3	62	52	6	12	29	1.63
22770--22839	34	2.1	32	86	5	95	31	15	30	22	1.95
28287--28349	21	2.9	21	81	13	65	22	38	23	15	1.93
31103--31153	20	2.5	20	96	0	93	21	35	25	17	1.95
32434--32545	57	2.0	57	87	0	161	35	24	16	23	1.95
37818--37872	29	1.9	29	85	3	76	45	7	10	36	1.67
37809--37872	29	2.2	28	80	2	74	40	7	12	39	1.72
38298--38614	157	2.0	157	95	0	562	40	28	16	14	1.88
40439--40486	13	3.7	13	74	0	51	43	18	6	31	1.75
40488--40520	13	2.5	13	100	0	66	30	27	21	21	1.98
48187--48220	16	2.1	17	88	5	52	35	0	0	64	0.94
48497--48525	14	2.1	14	100	0	58	6	6	6	79	1.06
48884--49015	60	2.2	60	83	0	156	35	20	3	40	1.68
56497--56553	27	2.0	29	83	6	73	36	15	1	45	1.57
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
57411--57472	20	3.0	20	65	9	52	37	11	22	29	1.89
62317--62368	19	2.7	19	96	0	95	30	15	30	23	1.95
62258--62432	83	2.1	83	81	8	196	33	17	24	24	1.96
63006--63048	21	2.0	21	100	0	86	23	27	23	25	2.00
63063--63093	16	1.9	16	100	0	62	61	6	0	32	1.21
63759--63835	23	3.3	23	77	12	77	28	24	27	19	1.99
64063--64095	16	2.0	17	88	5	50	36	24	6	33	1.80
66106--66175	24	3.0	23	85	4	104	18	24	25	31	1.98
73354--73413	27	2.2	28	82	14	81	38	10	6	45	1.64
73381--73447	34	2.0	34	81	0	80	47	4	2	44	1.38
80021--80054	16	2.1	16	100	0	68	47	5	29	17	1.71
85650--85706	31	1.9	28	86	10	78	56	7	14	22	1.62
86032--86117	42	2.1	40	84	4	109	36	18	3	41	1.68
86520--86556	14	2.6	15	83	8	51	29	0	0	70	0.88
104049--104312	129	2.0	129	94	0	465	30	22	16	30	1.96
115275--115312	19	2.0	19	89	0	58	10	15	26	47	1.78
117818--117855	20	1.9	20	88	0	58	21	26	10	42	1.85
124212--124272	2	30.0	2	93	3	104	47	0	3	49	1.18
125014--125296	88	3.3	83	78	9	284	47	7	19	26	1.75
125030--125425	43	9.2	42	71	13	236	49	6	17	27	1.71
125103--125318	85	2.5	86	77	9	233	49	6	18	25	1.73
125401--125464	29	2.2	29	82	0	74	54	7	17	20	1.67
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
129140--129179	19	2.1	19	86	9	55	40	0	0	60	0.97
129195--129244	24	2.1	24	84	0	64	36	6	2	56	1.36
130120--130180	22	3.0	19	73	15	59	47	22	3	26	1.67
134501--134538	13	2.9	13	100	0	76	60	0	39	0	0.97
138052--138079	9	3.1	9	100	0	56	46	0	42	10	1.38
145007--145042	17	2.1	18	89	5	56	55	0	0	44	0.99
146398--146466	36	1.9	36	90	0	111	43	18	11	26	1.84
146937--147023	43	2.0	44	88	6	133	32	10	22	34	1.88
147088--147134	21	2.2	21	85	7	60	17	19	6	57	1.60
147184--147228	20	2.2	20	88	8	63	15	15	6	62	1.52
147189--147258	36	1.9	35	83	11	88	17	15	7	60	1.57
149101--149156	21	2.7	20	81	13	60	80	0	16	3	0.85
149101--149156	10	5.4	10	76	14	51	80	0	16	3	0.85
152640--152795	54	2.9	54	85	2	208	38	13	20	27	1.90
153165--153309	22	6.6	22	93	0	254	33	16	12	37	1.86
154153--154458	123	2.5	123	93	1	524	41	15	18	24	1.89
154410--154477	22	3.3	22	66	26	67	50	7	25	17	1.72
154274--154619	162	2.1	162	89	2	516	41	13	19	24	1.88
154398--154497	39	2.6	39	96	0	191	47	8	23	22	1.77
154567--155040	137	3.4	137	88	1	655	39	14	18	26	1.90
156449--156492	16	2.6	17	78	3	54	22	2	6	68	1.25
156837--157105	145	1.8	147	81	4	339	41	5	7	45	1.54
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
163694--163784	42	2.2	40	82	5	101	64	3	1	30	1.16
163737--163776	16	2.4	16	87	4	53	67	2	0	30	1.04
163828--163882	28	2.0	26	86	6	74	52	5	0	41	1.24
165124--165162	11	3.7	10	86	10	51	23	0	0	76	0.78
167258--167357	44	2.3	43	84	6	132	19	5	25	51	1.67

Tables:   1

The End!