genome.fa.s3347.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003347.1 Hibiscus syriacus cultivar Beakdansim tig00007047_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  129431

Tables:   1   

This is table  1  of  1  ( 75 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4197--4264	23	3.0	23	84	0	91	17	25	26	30	1.97
4535--4598	18	3.6	18	79	8	76	37	1	21	39	1.63
4534--4580	6	7.8	6	81	9	51	42	2	19	36	1.63
10208--10275	13	5.2	13	85	0	73	35	16	20	27	1.94
20993--21066	23	3.2	23	77	17	64	16	1	27	55	1.49
23554--23622	23	3.0	23	82	0	84	18	26	24	30	1.98
24673--24733	28	2.2	28	82	5	72	52	6	1	39	1.37
24667--24722	29	1.9	29	82	13	71	51	3	1	42	1.29
24767--24848	23	3.4	24	86	9	123	43	6	2	47	1.41
24813--24911	38	2.6	38	81	12	123	45	8	2	44	1.44
24808--24920	36	3.0	35	76	15	111	46	8	2	42	1.49
25444--25480	16	2.3	15	90	9	56	48	2	2	45	1.30
25460--25526	28	2.4	28	85	7	82	53	5	1	38	1.34
25659--25687	14	2.1	14	100	0	58	44	6	6	41	1.58
25543--25750	38	5.6	37	72	15	162	44	8	3	43	1.52
25673--25810	62	2.2	61	89	1	204	43	5	3	47	1.42
25716--25773	24	2.4	24	88	5	91	43	1	3	51	1.28
25740--25810	37	1.9	37	91	5	117	45	4	2	47	1.36
25735--25837	37	2.7	38	77	16	115	43	6	3	45	1.48
26025--26049	2	12.5	2	100	0	50	52	0	0	48	1.00
33691--33778	31	2.8	31	82	1	95	35	7	4	52	1.51
35885--35916	7	4.6	7	96	0	55	18	0	34	46	1.49
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35880--35956	14	5.1	14	70	20	57	27	0	29	42	1.56
35944--36061	21	5.6	21	84	2	139	22	0	32	45	1.52
38336--38368	15	2.1	16	88	5	50	48	21	0	30	1.50
43545--43767	105	2.1	105	83	2	270	39	21	16	22	1.92
45248--45290	21	2.0	21	86	0	59	13	23	30	32	1.93
49267--49312	13	3.5	13	79	5	56	17	17	26	39	1.91
49283--49326	20	2.3	19	92	4	70	18	13	25	43	1.86
58157--58186	13	2.2	14	94	5	53	36	13	0	50	1.42
59319--59367	24	2.1	23	85	11	64	51	2	4	42	1.32
59935--59970	18	2.0	18	100	0	72	44	27	0	27	1.55
68795--68861	24	2.8	24	86	0	98	13	10	17	58	1.63
69133--69163	14	2.2	14	94	0	53	9	12	19	58	1.62
69497--69545	19	2.5	19	77	9	55	51	6	4	38	1.46
70402--70453	28	2.0	25	81	11	59	53	0	3	42	1.19
70822--70876	28	2.0	26	86	6	74	52	5	0	41	1.24
72127--72183	3	18.7	3	85	10	80	64	0	0	35	0.93
72318--72712	124	3.3	123	80	10	378	25	19	15	40	1.90
72516--73247	113	6.5	113	87	3	897	29	18	15	37	1.91
72516--73247	343	2.2	338	84	4	933	29	18	15	37	1.91
73149--73312	73	2.2	73	83	2	195	32	16	17	34	1.92
74096--74325	115	2.0	114	91	2	372	29	20	15	34	1.93
75676--75755	1	80.0	1	69	0	52	2	11	1	85	0.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
75676--75738	12	5.2	12	85	12	85	0	14	1	84	0.71
75683--75759	12	5.9	14	80	8	83	2	12	1	83	0.82
75676--75755	11	7.1	11	88	5	81	2	11	1	85	0.77
83099--83130	15	2.1	15	94	0	55	46	6	18	28	1.73
86426--86467	19	2.2	19	83	8	50	64	0	4	30	1.14
86410--86476	30	2.2	30	82	10	75	61	0	7	31	1.24
86947--86998	28	2.0	25	81	11	59	53	0	3	42	1.19
87367--87421	28	2.0	26	86	6	74	52	5	0	41	1.24
88676--88739	3	21.7	3	87	9	96	65	0	0	34	0.93
89703--89746	23	1.9	23	90	0	70	18	29	25	27	1.98
89874--89950	24	3.2	25	72	17	72	24	20	22	32	1.98
90513--90558	12	4.0	12	75	11	51	19	21	19	39	1.93
90516--90561	22	2.1	22	91	0	74	21	19	15	43	1.87
90519--90568	22	2.3	22	85	0	73	22	18	16	44	1.87
92522--92590	23	3.0	23	76	0	75	34	24	21	18	1.96
94096--94139	21	2.0	22	86	4	63	34	18	20	27	1.96
94597--94623	7	3.9	7	100	0	54	70	0	29	0	0.88
97291--97326	18	2.0	18	88	0	54	27	33	30	8	1.86
101847--101876	7	4.3	7	91	0	51	16	13	16	53	1.73
109074--109216	76	1.9	76	85	0	196	25	15	13	45	1.82
110738--110844	38	2.8	38	81	0	115	28	16	14	41	1.87
113036--113096	23	2.7	23	92	0	104	26	27	27	18	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
113321--113379	31	1.9	31	86	10	86	33	25	3	37	1.73
113423--113484	25	2.4	25	81	7	72	41	8	12	37	1.73
116944--116996	23	2.3	23	90	0	79	30	28	24	16	1.97
117229--117288	31	2.0	30	87	9	86	36	25	1	36	1.66
122266--122650	188	2.0	186	84	5	515	46	9	5	38	1.60
123022--123081	29	2.0	30	84	9	79	60	1	0	38	1.07
123049--123113	15	4.2	15	75	7	58	70	3	0	26	1.01
123865--123922	21	2.6	22	75	8	64	29	1	3	65	1.19
123889--123948	15	3.9	15	73	16	50	31	1	3	63	1.20

Tables:   1

The End!