Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003349.1 Hibiscus syriacus cultivar Beakdansim tig00007052_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  98060

Tables:   1   

This is table  1  of  1  ( 53 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
13910--13942
13
2.4
14
90
5
50
60
0
0
39
0.97
14110--14139
2
15.0
2
100
0
60
50
0
0
50
1.00
17604--17742
58
2.4
59
86
1
181
34
12
15
37
1.85
18240--18269
15
2.0
15
93
0
51
0
43
0
56
0.99
21111--21204
39
2.4
39
100
0
188
4
20
43
31
1.71
21724--21915
75
2.5
74
89
4
285
30
25
18
25
1.98
21875--21952
20
3.7
21
79
16
81
25
32
17
24
1.97
21877--21952
22
3.7
20
80
15
82
25
32
18
23
1.97
22176--22201
11
2.4
11
100
0
52
57
7
26
7
1.54
27727--27808
21
3.8
20
80
13
92
31
23
18
26
1.97
27751--27854
23
4.7
23
83
11
139
25
25
18
29
1.98
27727--27854
44
2.9
45
86
9
176
28
25
17
28
1.98
30444--30617
75
2.3
75
94
1
303
31
24
20
24
1.98
30601--30672
21
3.4
20
72
12
63
25
33
16
25
1.96
33859--33895
2
18.5
2
100
0
74
51
0
0
48
1.00
36958--36992
14
2.4
15
90
4
54
48
0
0
51
1.00
36958--37011
20
2.7
20
91
0
81
44
1
0
53
1.11
36966--37052
3
29.7
3
69
4
52
44
2
1
51
1.21
41606--41640
6
5.8
6
96
0
52
17
22
25
34
1.96
42486--42525
20
2.1
19
86
9
55
52
5
15
27
1.63
44901--44940
11
3.5
11
83
6
53
75
5
0
20
0.99
47999--48036
20
1.9
20
88
0
58
36
21
15
26
1.93
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
48756--48879
53
2.3
53
91
0
203
21
20
26
30
1.98
52089--52136
24
2.0
24
84
8
62
29
2
0
68
1.01
52185--52248
21
3.2
21
72
14
64
17
7
0
75
1.04
52201--52252
20
2.8
18
80
11
61
15
7
0
76
0.99
52185--52291
34
3.1
34
78
16
91
17
10
0
71
1.12
52230--52289
18
3.3
18
78
17
63
15
13
0
71
1.14
52248--52278
9
3.4
9
90
0
53
12
16
0
70
1.16
58279--58376
41
2.4
41
96
0
178
19
18
24
37
1.94
58306--58437
61
2.2
61
97
0
246
15
20
23
40
1.91
58365--58521
41
3.9
41
90
5
223
19
20
22
38
1.94
58279--58478
102
2.0
102
95
0
364
19
19
23
38
1.93
58450--58518
20
3.5
19
70
16
59
18
21
20
39
1.93
58662--58686
6
4.2
6
100
0
50
36
48
16
0
1.46
59189--59244
5
10.6
5
94
1
58
0
25
55
19
1.43
59212--59248
6
6.5
6
96
3
60
0
16
54
29
1.43
59342--59410
19
3.5
19
73
11
75
39
20
20
20
1.93
59444--59537
20
4.6
20
76
10
100
41
24
21
12
1.88
59356--59537
62
2.9
62
74
10
176
39
23
19
17
1.92
59397--59561
83
2.0
83
81
2
197
38
24
18
17
1.92
59354--59562
41
5.0
42
78
9
198
38
23
19
18
1.93
63091--63121
3
10.3
3
100
0
62
67
0
0
32
0.91
64667--64703
20
1.9
19
89
10
58
45
10
24
18
1.81
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
65520--65560
19
2.2
19
86
8
57
60
7
9
21
1.52
70493--70616
32
4.2
28
79
15
101
55
16
5
22
1.61
70499--70590
32
2.9
31
81
12
116
52
16
6
25
1.67
75569--75597
14
2.0
15
93
6
51
62
0
0
37
0.96
78544--78582
20
1.9
21
89
5
62
56
2
2
38
1.27
79646--79670
13
1.9
13
100
0
50
48
0
0
52
1.00
84462--84564
33
3.2
31
86
8
118
29
18
3
48
1.66
84471--84564
32
2.9
32
87
7
120
29
18
3
48
1.63
88540--88595
24
2.3
24
100
0
112
28
17
16
37
1.91

Tables:   1

The End!