genome.fa.s3350.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003350.1 Hibiscus syriacus cultivar Beakdansim tig00007054_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  82446

Tables:   1   

This is table  1  of  1  ( 50 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
363--399	19	1.9	19	88	0	56	32	16	10	40	1.83
699--760	33	1.9	31	84	12	81	53	1	0	45	1.10
715--763	25	1.9	26	83	4	64	51	0	0	48	1.00
725--805	14	5.8	14	71	10	58	49	0	1	49	1.08
728--801	28	2.6	28	75	8	71	50	0	1	48	1.09
1215--1269	19	2.8	20	88	5	94	65	14	9	10	1.47
1937--2016	23	3.5	23	84	6	108	35	18	6	40	1.76
2640--2665	2	13.0	2	100	0	52	50	0	0	50	1.00
4280--4363	15	5.8	15	69	17	61	48	0	1	50	1.08
4269--4367	42	2.4	42	88	5	139	48	0	1	50	1.07
5418--5458	18	2.3	18	86	0	55	46	0	9	43	1.36
11101--11136	18	1.9	19	88	5	56	30	2	0	66	1.06
11102--11166	29	2.3	28	89	2	103	32	3	0	64	1.09
14869--14942	26	2.8	26	68	24	64	27	6	4	62	1.39
18630--18752	51	2.4	51	87	2	167	19	29	34	16	1.93
22937--22998	28	2.2	29	94	2	108	27	3	22	46	1.67
25237--25275	3	13.0	3	83	0	51	41	0	0	58	0.98
25237--25288	9	5.8	9	77	6	52	46	0	0	53	1.00
26879--26928	23	2.0	26	85	11	70	46	2	0	52	1.12
38146--38200	17	3.0	18	87	10	76	85	0	12	1	0.68
38161--38208	7	7.0	7	86	9	64	85	0	14	0	0.60
38149--38208	20	2.9	19	85	11	75	85	0	13	1	0.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38146--38200	9	6.0	9	83	12	76	85	0	12	1	0.68
39553--39643	44	2.1	44	100	0	182	37	17	21	23	1.94
39598--39828	115	2.0	114	89	3	349	34	16	19	29	1.93
40577--40621	24	1.9	23	82	13	56	53	6	24	15	1.66
40600--40769	73	2.3	73	82	4	191	36	14	17	31	1.90
40673--41114	116	3.8	116	85	2	543	38	14	17	29	1.89
41018--41187	73	2.3	73	85	6	245	34	16	15	34	1.90
41166--41258	36	2.6	36	96	0	168	49	10	21	18	1.77
41166--41223	17	3.3	17	70	25	57	50	8	22	18	1.74
41205--41478	124	2.3	118	80	7	307	43	15	15	25	1.86
41643--41673	3	10.3	3	92	0	53	35	0	0	64	0.94
41631--41671	18	2.3	19	83	12	59	31	0	0	68	0.90
41645--41675	15	2.1	15	100	0	62	41	0	0	58	0.98
41672--41727	12	4.7	12	73	8	60	66	0	0	33	0.92
43304--43351	23	2.0	24	88	4	71	45	2	0	52	1.12
44034--44062	3	9.7	3	100	0	58	68	31	0	0	0.89
44441--44535	42	2.3	41	81	5	111	32	21	21	25	1.98
44946--45052	42	2.6	41	78	8	119	34	21	18	25	1.96
44218--45308	258	4.3	258	86	5	1442	35	17	16	31	1.92
58842--58884	20	2.1	21	86	4	61	60	13	13	11	1.59
59174--59198	10	2.5	10	100	0	50	56	12	12	20	1.67
60127--60160	16	2.3	14	90	10	50	55	0	0	44	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
72263--72307	23	2.0	23	100	0	90	22	8	20	48	1.76
72526--72584	30	2.0	30	82	0	73	32	8	22	37	1.84
76114--76156	15	2.9	14	80	10	50	0	23	9	67	1.19
76523--76583	31	2.0	31	90	0	95	49	1	1	47	1.21
77512--77597	30	2.8	30	80	5	84	40	2	8	48	1.45
79816--79846	15	2.1	15	93	0	53	67	16	0	16	1.23

Tables:   1

The End!