Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003351.1 Hibiscus syriacus cultivar Beakdansim tig00007056_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  86209

Tables:   1   

This is table  1  of  1  ( 50 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3877--3951
21
3.6
21
73
10
82
16
21
28
34
1.94
3858--3976
41
2.9
39
80
10
130
19
20
23
36
1.95
4572--4607
16
2.2
16
95
0
63
0
22
41
36
1.54
4690--4960
42
6.6
41
94
2
456
36
23
19
20
1.95
4690--4960
82
3.3
82
94
2
456
36
23
19
20
1.95
4975--5025
21
2.4
21
93
0
84
19
23
27
29
1.98
19235--19268
16
2.1
16
88
5
50
73
2
8
14
1.19
23232--23272
20
2.0
20
95
0
73
43
29
0
26
1.55
28901--28925
10
2.5
10
100
0
50
48
0
0
52
1.00
32752--32807
15
3.8
16
75
15
57
44
1
1
51
1.22
33687--33730
18
2.5
17
85
7
61
43
2
0
54
1.12
38873--38997
47
2.6
46
82
12
155
14
22
15
48
1.81
52078--52107
15
2.0
15
100
0
60
60
0
20
20
1.37
52081--52115
15
2.3
15
90
0
52
65
0
17
17
1.27
52200--52273
28
2.5
30
80
8
82
78
2
6
12
1.05
52200--52302
45
2.4
43
76
14
104
76
1
4
16
1.04
52227--52298
19
3.5
21
67
18
53
76
2
2
18
1.03
52191--52310
39
3.2
38
80
12
115
75
1
5
16
1.07
52226--52322
39
2.6
37
85
6
117
73
2
3
21
1.08
52258--52325
32
2.1
30
84
15
84
70
0
2
26
1.01
52235--52333
34
2.7
34
81
10
99
71
2
3
23
1.10
52366--52429
23
2.9
22
76
19
62
68
4
6
20
1.30
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
52751--52819
34
2.0
34
94
0
120
31
14
11
42
1.82
53368--54199
105
8.0
105
92
1
1287
22
17
26
34
1.96
54843--54998
68
2.3
67
84
3
199
36
9
21
32
1.86
54975--55254
36
8.0
35
77
12
261
40
13
20
26
1.89
54923--55236
138
2.3
137
84
1
414
39
13
20
27
1.89
55011--55199
102
1.9
103
87
2
283
40
13
19
27
1.88
55273--55391
36
3.3
35
70
14
100
41
15
16
26
1.89
55734--55769
18
2.0
18
88
0
54
41
30
8
19
1.81
56183--56231
22
2.2
22
92
0
80
28
14
24
32
1.94
56195--56238
22
2.0
22
86
0
61
31
13
22
31
1.93
56859--56916
20
2.9
20
82
5
64
1
12
6
79
1.00
58041--58079
8
5.0
8
84
6
53
58
12
17
10
1.61
58041--58079
15
2.5
15
87
4
51
58
12
17
10
1.61
60497--60526
15
2.0
15
100
0
60
60
0
20
20
1.37
60500--60534
15
2.3
15
90
0
52
65
0
17
17
1.27
60545--60586
20
2.0
21
86
4
59
71
0
11
16
1.14
60624--60687
28
2.3
28
78
10
69
79
1
7
10
0.99
60614--60732
9
13.5
8
69
18
51
76
0
5
16
1.03
60676--60756
31
2.7
29
82
5
81
71
0
2
25
0.98
60637--60744
39
2.8
39
84
4
130
74
0
5
19
1.07
60678--60805
39
3.2
40
79
14
133
67
0
2
28
1.08
60674--60811
37
3.8
34
74
13
100
67
0
2
29
1.08
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
60801--60862
23
2.8
22
75
20
58
67
4
6
20
1.32
61189--61257
34
2.0
34
97
0
129
33
13
11
42
1.80
71142--71177
17
2.2
16
90
5
54
16
22
0
61
1.35
76224--76283
24
2.4
25
76
17
72
38
5
5
51
1.45
76418--76479
27
2.3
27
85
0
79
59
1
0
38
1.07
83459--83564
53
2.0
53
88
0
158
33
12
10
44
1.76

Tables:   1

The End!