genome.fa.s3352.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003352.1 Hibiscus syriacus cultivar Beakdansim tig00007057_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  159531

Tables:   1   

This is table  1  of  1  ( 82 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26724--26758	17	2.0	18	94	5	63	45	28	0	25	1.54
33650--33712	30	2.1	30	90	0	99	28	17	25	28	1.97
34105--34138	16	2.1	16	88	0	50	35	8	23	32	1.86
38180--38242	30	2.1	30	93	0	108	28	19	25	26	1.98
43150--43226	39	2.0	39	82	10	95	46	10	10	32	1.72
43698--43835	21	6.7	21	82	3	181	40	18	25	15	1.90
43683--43835	62	2.5	62	88	2	191	40	17	25	16	1.90
43824--43917	20	4.7	20	80	2	89	34	24	18	23	1.96
43719--43835	41	2.9	41	100	0	234	41	17	24	16	1.90
43821--43898	41	1.9	41	86	0	111	39	21	16	21	1.92
44435--44501	19	3.5	19	85	2	89	47	25	16	10	1.78
44497--44662	20	9.1	19	73	16	127	12	22	21	43	1.86
44502--44578	39	2.0	39	87	5	111	9	19	25	45	1.80
44550--44637	33	2.6	33	92	1	140	11	25	25	38	1.89
46664--46786	42	2.9	42	80	2	122	22	36	17	22	1.95
46720--46786	21	3.2	21	66	6	55	23	35	20	19	1.95
48145--48180	14	2.6	14	95	0	63	30	0	25	44	1.54
48363--48489	33	3.9	32	85	8	184	14	22	19	43	1.88
48356--48488	66	2.0	66	95	0	239	16	21	19	42	1.89
50968--51021	24	2.2	24	90	0	81	38	20	16	24	1.92
50981--51035	24	2.3	24	83	0	65	36	18	16	29	1.92
53584--53658	19	3.9	19	87	3	96	38	21	24	16	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53584--53657	39	1.9	38	86	2	103	37	21	24	16	1.93
53567--53660	19	4.8	19	84	3	89	42	21	21	14	1.88
54206--54250	18	2.5	18	88	0	72	13	15	44	26	1.83
55529--55566	20	1.9	20	88	0	58	50	21	15	13	1.78
55829--55872	22	2.0	22	95	0	79	18	15	45	20	1.85
56060--56153	20	4.7	20	80	2	89	23	18	24	34	1.96
56040--56154	20	5.7	20	78	5	88	23	17	23	35	1.95
56143--56235	20	4.5	21	78	4	100	17	24	18	39	1.91
56082--56216	41	3.3	41	82	4	139	19	21	20	38	1.94
56143--56235	41	2.3	41	100	0	186	17	24	18	39	1.91
57144--57181	15	2.6	15	87	4	51	23	7	0	68	1.16
57391--57467	39	2.0	39	84	5	102	48	10	9	32	1.69
61121--61209	45	2.0	46	86	8	130	35	11	13	39	1.80
61385--61651	58	4.7	58	76	17	265	35	6	13	44	1.69
61463--61554	46	2.0	46	95	0	166	36	6	16	40	1.74
61411--61612	104	1.9	107	89	4	320	35	6	13	43	1.71
61716--61886	39	4.4	39	79	0	171	41	7	12	38	1.71
61715--61886	78	2.2	78	84	5	213	41	6	12	38	1.70
67315--67355	18	2.3	18	87	4	57	26	4	2	65	1.25
69037--69071	18	1.9	18	88	0	52	25	28	20	25	1.99
69564--69635	26	3.0	24	68	27	62	26	6	4	62	1.39
73405--73467	29	2.1	29	82	8	74	33	14	23	28	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
73980--74039	2	31.0	2	93	6	106	51	0	0	48	1.00
75630--75704	31	2.5	31	88	2	116	45	14	10	29	1.79
87806--87967	40	4.1	40	97	0	306	23	17	27	32	1.97
88072--88197	48	2.8	44	80	8	137	42	7	21	29	1.79
88583--88607	12	2.1	12	100	0	50	28	16	24	32	1.96
93343--93408	28	2.4	28	94	2	116	27	27	13	31	1.94
93626--93678	21	2.5	21	81	0	61	18	24	18	37	1.94
93670--93782	20	5.6	20	92	2	172	41	18	19	20	1.90
93980--94045	22	3.0	22	88	0	96	25	37	15	21	1.92
94387--94451	20	3.3	20	82	2	87	13	16	21	47	1.82
94417--94459	20	2.2	20	86	0	59	13	13	20	51	1.76
96338--96431	33	2.8	34	81	3	109	44	20	19	15	1.86
96498--96624	20	6.3	20	93	0	155	22	18	21	37	1.95
96498--96624	40	3.2	40	88	0	173	22	18	21	37	1.95
97109--97206	21	4.7	21	71	6	65	23	34	19	22	1.96
98681--98776	33	2.9	34	87	3	140	12	23	21	41	1.87
98748--98841	20	4.7	20	92	2	154	18	22	25	34	1.96
101019--101045	14	1.9	14	100	0	54	7	18	29	44	1.77
101259--101310	24	2.2	24	82	0	59	36	19	17	26	1.94
102138--102203	20	3.3	20	93	2	107	21	19	27	31	1.97
102190--102242	20	2.7	20	90	0	79	20	20	22	35	1.96
103582--103608	14	1.9	14	100	0	54	70	0	7	22	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
105661--105693	17	2.0	17	88	5	50	42	3	0	54	1.15
105650--105726	27	3.0	26	77	11	70	41	3	0	54	1.19
105875--105945	29	2.4	31	83	4	92	47	9	8	33	1.67
112039--112105	16	4.3	16	84	3	75	11	8	17	61	1.56
112037--112097	32	1.9	32	86	0	86	9	11	21	57	1.62
113251--113361	54	2.1	54	96	0	204	50	3	4	41	1.40
130014--130043	15	1.9	16	93	6	53	50	0	10	40	1.36
133238--133264	14	1.9	14	100	0	54	51	7	22	18	1.70
135491--135591	51	2.0	51	96	0	184	34	11	21	31	1.90
137354--137381	14	2.0	14	100	0	56	50	14	21	14	1.78
148589--148619	3	10.3	3	100	0	62	67	0	0	32	0.91
148647--148674	2	14.0	2	100	0	56	50	0	0	50	1.00
149157--149304	27	5.5	27	95	0	251	35	20	20	23	1.96
150118--150198	3	27.0	3	97	0	153	65	0	1	33	1.01
150341--151013	124	5.5	123	91	1	1014	24	19	16	39	1.92
150318--151013	247	2.8	246	89	2	1017	25	19	16	39	1.91

Tables:   1

The End!